Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc66.31 Carica papaya HOM05D004866 ORTHO05D005716 1.5e-57 226.1 121 100.0
Potri.013G111400 Populus trichocarpa HOM05D004866 ORTHO05D005716 1.0e-31 140.2 105 69.5
Sabra19G0093900 Salix brachista HOM05D004866 ORTHO05D005716 2.3e-31 139.0 102 70.6
Ciclev10001144m.g Citrus clementina HOM05D004866 ORTHO05D005716 2.6e-30 135.6 110 67.3
Manes.02G192700 Manihot esculenta HOM05D004866 ORTHO05D005716 4.4e-30 134.8 105 66.7
Thecc.08G185100 Theobroma cacao HOM05D004866 ORTHO05D005716 1.3e-29 133.3 106 66.0
Potri.019G082400 Populus trichocarpa HOM05D004866 ORTHO05D005716 2.2e-29 132.5 105 66.7
Haze_22514 Corylus avellana HOM05D004866 ORTHO05D005716 1.8e-28 129.4 107 63.6
Dinv15070 Davidia involucrata HOM05D004866 ORTHO05D005716 1.8e-28 129.4 108 63.9
Duzib211G0502 Durio zibethinus HOM05D004866 ORTHO05D005716 3.2e-28 128.6 106 63.2
Atru.chr13.1733 Acer truncatum HOM05D004866 ORTHO05D005716 5.4e-28 127.9 114 64.9
Cfa013842 Carpinus fangiana HOM05D004866 ORTHO05D005716 4.6e-27 124.8 107 62.6
TWI60G1141 Tripterygium wilfordii HOM05D004866 ORTHO05D005716 1.0e-26 123.6 108 63.9
Thecc.08G184800 Theobroma cacao HOM05D004866 ORTHO05D005716 1.3e-26 123.2 106 60.4
Atru.chr2.563 Acer truncatum HOM05D004866 ORTHO05D005716 3.0e-26 122.1 114 62.3
Lj7C291G3 Lonicera japonica HOM05D004866 ORTHO05D005716 1.5e-25 119.8 107 62.6
Eucgr.C02238 Eucalyptus grandis HOM05D004866 ORTHO05D005716 2.5e-25 119.0 107 58.9
Rhsim11G0058000 Rhododendron simsii HOM05D004866 ORTHO05D005716 3.3e-25 118.6 108 62.0
Rhsim11G0058200 Rhododendron simsii HOM05D004866 ORTHO05D005716 3.3e-25 118.6 108 62.0
Actinidia02574 Actinidia chinensis HOM05D004866 ORTHO05D005716 4.3e-25 118.2 108 60.2
TWI34G1187 Tripterygium wilfordii HOM05D004866 ORTHO05D005716 5.6e-25 117.9 108 61.1
CiPaw.08G058600 Carya illinoinensis HOM05D004866 ORTHO05D005716 1.2e-24 116.7 110 59.1
Gorai.006G130600 Gossypium raimondii HOM05D004866 ORTHO05D005716 1.0e-23 113.6 106 56.6
CSS0004253 Camellia sinensis var. sinensis HOM05D004866 ORTHO05D005716 1.8e-23 112.8 108 55.6
TAR624G1235 Trochodendron aralioides HOM05D004866 ORTHO05D005716 1.8e-23 112.8 112 56.2
Gohir.D09G113100 Gossypium hirsutum HOM05D004866 ORTHO05D005716 2.3e-23 112.5 106 56.6
QL02p033402 Quercus lobata HOM05D004866 ORTHO05D005716 4.0e-23 111.7 116 52.6
CiPaw.07G160700 Carya illinoinensis HOM05D004866 ORTHO05D005716 8.9e-23 110.5 107 55.1
Gohir.A09G116000 Gossypium hirsutum HOM05D004866 ORTHO05D005716 8.9e-23 110.5 106 55.7
DCAR_001057 Daucus carota HOM05D004866 ORTHO05D005716 1.5e-22 109.8 106 56.6
Duzib211G0074 Durio zibethinus HOM05D004866 ORTHO05D005716 2.0e-22 109.4 105 56.2
THA.LOC104816334 Tarenaya hassleriana HOM05D004866 ORTHO05D005716 4.4e-22 108.2 111 55.0
Sp1g30340 Schrenkiella parvula HOM05D004866 ORTHO05D005716 9.8e-22 107.1 106 57.5
BcaB03g13658 Brassica carinata HOM05D004866 ORTHO05D005716 1.7e-21 106.3 108 56.5
MBI09_g41429_MAGBIO Magnolia biondii HOM05D004866 ORTHO05D005716 2.2e-21 105.9 110 52.7
PSO017G5284 Papaver somniferum HOM05D004866 ORTHO05D005716 2.9e-21 105.5 102 48.0
Thhalv10010385m.g Eutrema salsugineum HOM05D004866 ORTHO05D005716 3.7e-21 105.1 110 54.5
CANSAT25G2412 Cannabis sativa HOM05D004866 ORTHO05D005716 8.3e-21 104.0 111 54.1
COL.COLO4_38510 Corchorus olitorius HOM05D004866 ORTHO05D005716 8.3e-21 104.0 106 52.8
BcaC05g27723 Brassica carinata HOM05D004866 ORTHO05D005716 1.9e-20 102.8 106 54.7
A05p23590 Brassica napus HOM05D004866 ORTHO05D005716 1.9e-20 102.8 106 54.7
C05p37040 Brassica napus HOM05D004866 ORTHO05D005716 1.9e-20 102.8 106 54.7
BolC5t32456H Brassica oleracea HOM05D004866 ORTHO05D005716 1.9e-20 102.8 106 54.7
BraA05t21227Z Brassica rapa HOM05D004866 ORTHO05D005716 1.9e-20 102.8 106 54.7
Aqoxy5G02452 Aquilegia oxysepala HOM05D004866 ORTHO05D005716 3.2e-20 102.1 111 51.4
PGR042G1785 Punica granatum HOM05D004866 ORTHO05D005716 3.2e-20 102.1 109 56.9
ATR0752G218 Amborella trichopoda HOM05D004866 ORTHO05D005716 4.1e-20 101.7 111 55.0
vmacro12484 Vaccinium macrocarpon HOM05D004866 ORTHO05D005716 4.1e-20 101.7 107 54.2
Aa31LG6G8820 Aethionema arabicum HOM05D004866 ORTHO05D005716 1.2e-19 100.1 110 54.5
Carub.0001s3321 Capsella rubella HOM05D004866 ORTHO05D005716 1.6e-19 99.8 107 51.4
RcHm_v2.0_Chr7g0226321 Rosa chinensis HOM05D004866 ORTHO05D005716 2.0e-19 99.4 108 51.9
TAR628G0891 Trochodendron aralioides HOM05D004866 ORTHO05D005716 2.0e-19 99.4 113 50.4
COL.COLO4_23639 Corchorus olitorius HOM05D004866 ORTHO05D005716 3.5e-19 98.6 120 51.7
AT1G35620 Arabidopsis thaliana HOM05D004866 ORTHO05D005716 7.8e-19 97.4 109 51.4
MD15G1411400 Malus domestica HOM05D004866 ORTHO05D005716 1.3e-18 96.7 110 52.7
Nitab4.5_0006657g0010 Nicotiana tabacum HOM05D004866 ORTHO05D005716 1.3e-18 96.7 107 45.8
Prupe.1G557400 Prunus persica HOM05D004866 ORTHO05D005716 1.3e-18 96.7 107 51.4
MD08G1220700 Malus domestica HOM05D004866 ORTHO05D005716 1.7e-18 96.3 109 47.7
MD09G1249700 Malus domestica HOM05D004866 ORTHO05D005716 1.7e-18 96.3 109 47.7
CsaV3_2G033540 Cucumis sativus L. HOM05D004866 ORTHO05D005716 2.3e-18 95.9 112 48.2
CARHR034420 Cardamine hirsuta HOM05D004866 ORTHO05D005716 3.9e-18 95.1 109 51.4
MELO3C008127.2 Cucumis melo HOM05D004866 ORTHO05D005716 3.9e-18 95.1 112 47.3
ECA247G2093 Erigeron canadensis HOM05D004866 ORTHO05D005716 5.0e-18 94.7 106 48.1
Cc01_g05780 Coffea canephora HOM05D004866 ORTHO05D005716 8.6e-18 94.0 108 50.0
Lsat_1_v5_gn_1_12401 Lactuca sativa HOM05D004866 ORTHO05D005716 1.1e-17 93.6 108 50.9
FvH4_5g30970 Fragaria vesca HOM05D004866 ORTHO05D005716 1.9e-17 92.8 108 46.3
FAN18G3952 Fragaria x ananassa HOM05D004866 ORTHO05D005716 1.9e-17 92.8 108 46.3
Nitab4.5_0000303g0220 Nicotiana tabacum HOM05D004866 ORTHO05D005716 1.9e-17 92.8 107 46.7
FAN04G1244 Fragaria x ananassa HOM05D004866 ORTHO05D005716 2.5e-17 92.4 108 46.3
FAN04G1967 Fragaria x ananassa HOM05D004866 ORTHO05D005716 2.5e-17 92.4 108 46.3
PGSC0003DMG400026074 Solanum tuberosum HOM05D004866 ORTHO05D005716 2.5e-17 92.4 107 45.8
FAN08G2315 Fragaria x ananassa HOM05D004866 ORTHO05D005716 3.3e-17 92.0 108 46.3
FAN13G0537 Fragaria x ananassa HOM05D004866 ORTHO05D005716 3.3e-17 92.0 108 46.3
CAN.G199.2 Capsicum annuum HOM05D004866 ORTHO05D005716 5.6e-17 91.3 107 43.9
Medtr1g096790 Medicago truncatula HOM05D004866 ORTHO05D005716 5.6e-17 91.3 111 45.9
Sopen06g023810 Solanum pennellii HOM05D004866 ORTHO05D005716 5.6e-17 91.3 107 44.9
ClCG11G008070 Citrullus lanatus HOM05D004866 ORTHO05D005716 7.3e-17 90.9 111 45.9
AUR62022699 Chenopodium quinoa HOM05D004866 ORTHO05D005716 9.5e-17 90.5 105 46.7
Migut.C01261 Erythranthe guttata HOM05D004866 ORTHO05D005716 1.6e-16 89.7 102 50.0
Rhsim06G0094600 Rhododendron simsii HOM05D004866 ORTHO05D005716 1.6e-16 89.7 106 48.1
TPR.G15688 Trifolium pratense HOM05D004866 ORTHO05D005716 2.1e-16 89.4 112 44.6
AUR62004637 Chenopodium quinoa HOM05D004866 ORTHO05D005716 2.8e-16 89.0 105 46.7
Lj5g0015319 Lotus japonicus HOM05D004866 ORTHO05D005716 3.6e-16 88.6 110 45.5
EL10Ac1g00092 Beta vulgaris HOM05D004866 ORTHO05D005716 4.7e-16 88.2 105 44.8
HanXRQChr04g0109621 Helianthus annuus HOM05D004866 ORTHO05D005716 6.2e-16 87.8 106 50.0
Oeu021211.1 Olea europaea HOM05D004866 ORTHO05D005716 1.4e-15 86.7 108 48.1
Glyma.10G217600 Glycine max HOM05D004866 ORTHO05D005716 2.3e-15 85.9 109 46.8
Phvul.007G088500 Phaseolus vulgaris HOM05D004866 ORTHO05D005716 3.1e-15 85.5 108 44.4
VMungo0720G1828 Vigna mungo HOM05D004866 ORTHO05D005716 3.1e-15 85.5 111 48.6
Peaxi162Scf00268g01017 Petunia axillaris HOM05D004866 ORTHO05D005716 6.8e-15 84.3 105 43.8
HPP92_019370 Vanilla planifolia HOM05D004866 ORTHO05D005716 6.8e-15 84.3 109 46.8
Ah.05g178220 Amaranthus hybridus HOM05D004866 ORTHO05D005716 8.9e-15 84.0 105 44.8
Lalb_Chr02g0141731 Lupinus albus HOM05D004866 ORTHO05D005716 8.9e-15 84.0 108 40.7
SHI09019 Sapria himalayana HOM05D004866 ORTHO05D005716 8.9e-15 84.0 67 58.2
Gohir.A05G250501 Gossypium hirsutum HOM05D004866 ORTHO05D005716 1.5e-14 83.2 71 62.0
Gohir.D05G253300 Gossypium hirsutum HOM05D004866 ORTHO05D005716 1.5e-14 83.2 71 62.0
Sed0013291 Sechium edule HOM05D004866 ORTHO05D005716 1.5e-14 83.2 112 39.3
arahy.Tifrunner.gnm1.ann1.YL670A Arachis hypogaea HOM05D004866 ORTHO05D005716 2.0e-14 82.8 111 41.4
Lalb_Chr03g0036111 Lupinus albus HOM05D004866 ORTHO05D005716 2.0e-14 82.8 110 44.5
arahy.Tifrunner.gnm1.ann1.AKH03T Arachis hypogaea HOM05D004866 ORTHO05D005716 2.6e-14 82.4 111 41.4
Lalb_Chr06g0161961 Lupinus albus HOM05D004866 ORTHO05D005716 2.6e-14 82.4 110 46.4
SGA_v2.0_scaffold118G32495 Striga asiatica HOM05D004866 ORTHO05D005716 2.6e-14 82.4 105 47.6
CDE04G2694 Ceratophyllum demersum HOM05D004866 ORTHO05D005716 5.8e-14 81.3 72 51.4
Gorai.009G263700 Gossypium raimondii HOM05D004866 ORTHO05D005716 7.5e-14 80.9 71 60.6
SGA_v2.0_scaffold118G32519 Striga asiatica HOM05D004866 ORTHO05D005716 7.5e-14 80.9 105 47.6
HanXRQChr02g0044281 Helianthus annuus HOM05D004866 ORTHO05D005716 9.8e-14 80.5 106 44.3
Oeu037757.1 Olea europaea HOM05D004866 ORTHO05D005716 1.7e-13 79.7 109 46.8
Gohir.D05G276400 Gossypium hirsutum HOM05D004866 ORTHO05D005716 4.9e-13 78.2 110 40.9
Gorai.009G289400 Gossypium raimondii HOM05D004866 ORTHO05D005716 4.9e-13 78.2 110 40.9
Zm00001eb082680 Zea mays HOM05D004866 ORTHO05D005716 8.3e-13 77.4 64 54.7
Nitab4.5_0001579g0120 Nicotiana tabacum HOM05D004866 ORTHO05D005716 1.9e-12 76.3 104 39.4
SalBow7G0145 Salvia bowleyana HOM05D004866 ORTHO05D005716 2.4e-12 75.9 104 44.2
Nitab4.5_0000167g0040 Nicotiana tabacum HOM05D004866 ORTHO05D005716 3.2e-12 75.5 108 39.8
Os04g0432500 Oryza sativa ssp. japonica HOM05D004866 ORTHO05D005716 9.2e-12 73.9 61 54.1
Sed0018546 Sechium edule HOM05D004866 ORTHO05D005716 1.2e-11 73.6 102 41.2
MSTRG.22459 Avicennia marina HOM05D004866 ORTHO05D005716 1.6e-11 73.2 80 46.2
SGA_v2.0_scaffold24G10559 Striga asiatica HOM05D004866 ORTHO05D005716 2.1e-11 72.8 105 42.9
CAN.G2.14 Capsicum annuum HOM05D004866 ORTHO05D005716 3.5e-11 72.0 107 38.3
Peaxi162Scf01013g00127 Petunia axillaris HOM05D004866 ORTHO05D005716 2.3e-10 69.3 104 38.5
PGSC0003DMG400027609 Solanum tuberosum HOM05D004866 ORTHO05D005716 6.6e-10 67.8 107 37.4
MSTRG.1528 Avicennia marina HOM05D004866 ORTHO05D005716 1.9e-09 66.2 104 41.3
SalBow6G2673 Salvia bowleyana HOM05D004866 ORTHO05D005716 2.5e-09 65.9 104 42.3
SalBow1G5438 Salvia bowleyana HOM05D004866 ORTHO05D005716 3.3e-09 65.5 104 41.3
Solyc11g019920.2 Solanum lycopersicum HOM05D004866 ORTHO05D005716 4.3e-09 65.1 107 35.5
Sopen11g010040 Solanum pennellii HOM05D004866 ORTHO05D005716 4.3e-09 65.1 107 35.5
Migut.N03354 Erythranthe guttata HOM05D004866 ORTHO05D005716 5.6e-09 64.7 86 45.3
Aa31LG9G14850 Aethionema arabicum HOM05D004866 ORTHO05D005716 7.3e-09 64.3 67 53.7
GSVIVG01034781001 Vitis vinifera HOM05D004866 ORTHO05D005716 7.3e-09 64.3 56 57.1
Hund16793 Selenicereus undatus HOM05D004866 ORTHO05D005716 9.5e-09 63.9 63 47.6
Os02g0550300 Oryza sativa ssp. japonica HOM05D004866 ORTHO05D005716 6.2e-08 61.2 64 51.6
SEGI_34559 Sequoiadendron giganteum HOM05D004866 ORTHO05D005716 6.2e-08 61.2 118 33.9
unitig_0.g2131 Utricularia gibba HOM05D004866 ORTHO05D005716 2.3e-07 59.3 111 35.1
Zm00001eb243460 Zea mays HOM05D004866 ORTHO05D005716 5.2e-07 58.2 64 48.4
CDE02G1426 Ceratophyllum demersum HOM05D000012 ORTHO05D000540 4.4e-06 55.1 45 55.6


User provided reference genes

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