Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc66.2 Carica papaya HOM05D003774 ORTHO05D009174 2.5e-83 312.0 152 100.0
Ciclev10001943m.g Citrus clementina HOM05D003774 ORTHO05D009174 6.9e-65 250.8 152 74.3
TAR624G0812 Trochodendron aralioides HOM05D003774 ORTHO05D009174 8.5e-63 243.8 150 71.3
Cfa012969 Carpinus fangiana HOM05D003774 ORTHO05D009174 4.6e-61 238.0 152 69.7
QL02p014374 Quercus lobata HOM05D003774 ORTHO05D009174 1.0e-60 236.9 151 69.5
Atru.chr13.2367 Acer truncatum HOM05D003774 ORTHO05D009174 1.8e-60 236.1 152 71.7
Thecc.08G192500 Theobroma cacao HOM05D003774 ORTHO05D009174 3.0e-60 235.3 152 71.7
Rhsim11G0052900 Rhododendron simsii HOM05D003774 ORTHO05D009174 8.7e-60 233.8 148 69.6
Potri.019G079000 Populus trichocarpa HOM05D003774 ORTHO05D009174 2.5e-59 232.3 146 71.9
Manes.02G198600 Manihot esculenta HOM05D003774 ORTHO05D009174 3.3e-59 231.9 152 68.4
Haze_21313 Corylus avellana HOM05D003774 ORTHO05D009174 4.3e-59 231.5 149 69.8
COL.COLO4_24651 Corchorus olitorius HOM05D003774 ORTHO05D009174 5.7e-59 231.1 152 69.7
GSVIVG01026084001 Vitis vinifera HOM05D003774 ORTHO05D009174 7.4e-59 230.7 152 68.4
Gohir.A13G119000 Gossypium hirsutum HOM05D003774 ORTHO05D009174 9.7e-59 230.3 152 69.1
Prupe.1G555600 Prunus persica HOM05D003774 ORTHO05D009174 9.7e-59 230.3 150 66.7
Sabra13G0091200 Salix brachista HOM05D003774 ORTHO05D009174 1.6e-58 229.6 146 71.2
TWI59G1355 Tripterygium wilfordii HOM05D003774 ORTHO05D009174 2.2e-58 229.2 149 69.1
Actinidia29410 Actinidia chinensis HOM05D003774 ORTHO05D009174 8.2e-58 227.3 153 68.0
FAN18G3876 Fragaria x ananassa HOM05D003402 ORTHO05D003939 1.1e-57 226.9 142 72.5
CiPaw.07G235700 Carya illinoinensis HOM05D003774 ORTHO05D009174 1.4e-57 226.5 147 68.7
DCAR_003529 Daucus carota HOM05D003774 ORTHO05D009174 2.4e-57 225.7 149 69.1
FAN22G1282 Fragaria x ananassa HOM05D003774 ORTHO05D009174 2.4e-57 225.7 142 71.8
Gohir.D13G122800 Gossypium hirsutum HOM05D003774 ORTHO05D009174 2.4e-57 225.7 152 68.4
RcHm_v2.0_Chr7g0227151 Rosa chinensis HOM05D003774 ORTHO05D009174 4.1e-57 224.9 142 71.1
FvH4_5g31620 Fragaria vesca HOM05D003774 ORTHO05D009174 5.3e-57 224.6 142 71.8
Gorai.013G137800 Gossypium raimondii HOM05D003774 ORTHO05D009174 6.9e-57 224.2 152 67.8
CANSAT25G3020 Cannabis sativa HOM05D003774 ORTHO05D009174 2.0e-56 222.6 147 68.0
MD08G1217800 Malus domestica HOM05D003774 ORTHO05D009174 1.0e-55 220.3 151 66.9
PSO017G5271 Papaver somniferum HOM05D003774 ORTHO05D009174 1.3e-55 219.9 148 64.9
PSO170G6059 Papaver somniferum HOM05D003774 ORTHO05D009174 1.3e-55 219.9 148 64.9
PGR042G3286 Punica granatum HOM05D003774 ORTHO05D009174 2.2e-55 219.2 146 69.9
Oeu013896.2 Olea europaea HOM05D003774 ORTHO05D009174 5.0e-55 218.0 152 63.8
PGSC0003DMG401025647 Solanum tuberosum HOM05D003774 ORTHO05D009174 2.5e-54 215.7 152 64.5
PGSC0003DMG402025647 Solanum tuberosum HOM05D003774 ORTHO05D009174 2.5e-54 215.7 152 64.5
ClCG08G000170 Citrullus lanatus HOM05D003774 ORTHO05D009174 3.2e-54 215.3 150 62.7
Eucgr.F02990 Eucalyptus grandis HOM05D003774 ORTHO05D009174 3.2e-54 215.3 144 67.4
Glyma.06G325100 Glycine max HOM05D003774 ORTHO05D009174 3.2e-54 215.3 149 65.1
MBI09_g10676_MAGBIO Magnolia biondii HOM05D003774 ORTHO05D009174 5.5e-54 214.5 149 63.8
Nn1g08406 Nelumbo nucifera HOM05D003774 ORTHO05D009174 1.2e-53 213.4 143 66.4
THA.LOC104816521 Tarenaya hassleriana HOM05D003774 ORTHO05D009174 1.2e-53 213.4 144 65.3
Nitab4.5_0005616g0010 Nicotiana tabacum HOM05D003774 ORTHO05D009174 2.1e-53 212.6 148 64.9
Sopen11g022610 Solanum pennellii HOM05D003774 ORTHO05D009174 6.1e-53 211.1 152 63.2
Aqoxy5G02648 Aquilegia oxysepala HOM05D003774 ORTHO05D009174 7.9e-53 210.7 143 65.7
Cc10_g09600 Coffea canephora HOM05D003774 ORTHO05D009174 1.4e-52 209.9 151 62.9
Nitab4.5_0001463g0050 Nicotiana tabacum HOM05D003774 ORTHO05D009174 1.4e-52 209.9 148 63.5
MELO3C022228.2 Cucumis melo HOM05D003774 ORTHO05D009174 2.3e-52 209.1 150 60.7
VMungo1080G0925 Vigna mungo HOM05D003774 ORTHO05D009174 2.3e-52 209.1 143 65.0
Lj3g0005610 Lotus japonicus HOM05D003774 ORTHO05D009174 3.9e-52 208.4 149 63.1
Lsat_1_v5_gn_1_25820 Lactuca sativa HOM05D003774 ORTHO05D009174 5.1e-52 208.0 139 65.5
CARHR034180 Cardamine hirsuta HOM05D003774 ORTHO05D009174 8.8e-52 207.2 144 63.9
Phvul.005G000200 Phaseolus vulgaris HOM05D003774 ORTHO05D009174 8.8e-52 207.2 143 63.6
EL10Ac1g00136 Beta vulgaris HOM05D003774 ORTHO05D009174 1.1e-51 206.8 148 62.8
Sp1g30140 Schrenkiella parvula HOM05D003774 ORTHO05D009174 1.5e-51 206.5 148 63.5
CsaV3_5G040550 Cucumis sativus L. HOM05D003774 ORTHO05D009174 2.0e-51 206.1 150 60.0
BcaB07g33408 Brassica carinata HOM05D003774 ORTHO05D009174 2.6e-51 205.7 148 60.8
Medtr3g005060 Medicago truncatula HOM05D003774 ORTHO05D009174 2.6e-51 205.7 142 62.7
Thhalv10001825m.g Eutrema salsugineum HOM05D003774 ORTHO05D009174 4.4e-51 204.9 149 64.4
Aa31LG6G8720 Aethionema arabicum HOM05D003774 ORTHO05D009174 5.7e-51 204.5 148 63.5
AUR62004600 Chenopodium quinoa HOM05D003774 ORTHO05D009174 5.7e-51 204.5 148 62.2
Solyc11g027840.2 Solanum lycopersicum HOM05D003774 ORTHO05D009174 5.7e-51 204.5 152 62.5
AT1G35420 Arabidopsis thaliana HOM05D003774 ORTHO05D009174 7.4e-51 204.1 144 62.5
TPR.G25492 Trifolium pratense HOM05D003774 ORTHO05D009174 1.7e-50 203.0 149 59.1
Carub.0001s3302 Capsella rubella HOM05D003774 ORTHO05D009174 3.7e-50 201.8 144 61.8
Ah.05g178580 Amaranthus hybridus HOM05D003774 ORTHO05D009174 4.8e-50 201.4 147 61.9
AUR62023544 Chenopodium quinoa HOM05D003774 ORTHO05D009174 4.8e-50 201.4 148 61.5
Psat1g003280 Pisum sativum HOM05D003774 ORTHO05D009174 6.3e-50 201.1 149 58.4
AL1G50230 Arabidopsis lyrata HOM05D003774 ORTHO05D009174 1.4e-49 199.9 144 61.1
BraA09t38720Z Brassica rapa HOM05D003774 ORTHO05D009174 1.8e-49 199.5 148 60.8
BcaNung06721 Brassica carinata HOM05D003774 ORTHO05D009174 2.4e-49 199.1 148 60.1
A09p31810 Brassica napus HOM05D003774 ORTHO05D009174 2.4e-49 199.1 148 60.8
BcaC08g43731 Brassica carinata HOM05D003774 ORTHO05D009174 5.3e-49 198.0 148 60.1
C06p11130 Brassica napus HOM05D003774 ORTHO05D009174 5.3e-49 198.0 148 60.1
BolC6t36236H Brassica oleracea HOM05D003774 ORTHO05D009174 5.3e-49 198.0 148 60.1
Migut.N03372 Erythranthe guttata HOM05D003774 ORTHO05D009174 6.9e-49 197.6 146 60.3
FAN04G1660 Fragaria x ananassa HOM05D003774 ORTHO05D009174 6.9e-49 197.6 129 69.8
ATR0320G028 Amborella trichopoda HOM05D003774 ORTHO05D009174 2.0e-48 196.1 144 59.7
MSTRG.22470 Avicennia marina HOM05D003774 ORTHO05D009174 2.2e-47 192.6 147 61.2
ECA247G3883 Erigeron canadensis HOM05D003774 ORTHO05D009174 2.9e-47 192.2 139 61.2
SGA_v2.0_scaffold25G11034 Striga asiatica HOM05D003774 ORTHO05D009174 5.0e-47 191.4 142 59.2
SEGI_39255 Sequoiadendron giganteum HOM05D003774 ORTHO05D009174 3.2e-46 188.7 143 60.8
HanXRQChr02g0036581 Helianthus annuus HOM05D003774 ORTHO05D009174 2.1e-45 186.0 141 59.6
Zm00001eb348780 Zea mays HOM05D003774 ORTHO05D009174 2.7e-45 185.7 141 58.9
CDE08G0174 Ceratophyllum demersum HOM05D003774 ORTHO05D009174 4.7e-45 184.9 147 56.5
SalBow6G0569 Salvia bowleyana HOM05D003774 ORTHO05D009174 7.4e-43 177.6 146 57.5
HPP92_011955 Vanilla planifolia HOM05D003774 ORTHO05D009174 1.7e-42 176.4 145 56.6
Duzib211G0171 Durio zibethinus HOM05D003774 ORTHO05D009174 3.7e-42 175.3 152 56.6
SalBow6G5656 Salvia bowleyana HOM05D003774 ORTHO05D009174 8.2e-42 174.1 146 56.8
HPP92_011935 Vanilla planifolia HOM05D003774 ORTHO05D009174 1.1e-41 173.7 145 55.9
Glyma.04G256500 Glycine max HOM05D003774 ORTHO05D009174 3.1e-41 172.2 124 62.1
AagrBONN_evm.TU.Sc2ySwM_228.1693 Anthoceros agrestis HOM05D003774 ORTHO05D009174 1.0e-36 157.1 145 51.7
Mapoly0002s0135 Marchantia polymorpha HOM05D003774 ORTHO05D009174 1.3e-31 140.2 142 47.2
CSS0003364 Camellia sinensis var. sinensis HOM05D003774 ORTHO05D009174 1.1e-30 137.1 94 63.8
CSS0038100 Camellia sinensis var. sinensis HOM05D003774 ORTHO05D009174 2.1e-29 132.9 96 63.5
CSS0038880 Camellia sinensis var. sinensis HOM05D003774 ORTHO05D009174 2.1e-29 132.9 96 62.5
TAR636G2860 Trochodendron aralioides HOM05D003774 ORTHO05D009174 6.8e-28 127.9 77 70.1
CDE02G0175 Ceratophyllum demersum HOM05D003774 ORTHO05D009174 2.2e-26 122.9 150 40.7
Pp3c10_21530 Physcomitrium patens HOM05D003774 ORTHO05D009174 8.3e-18 94.4 151 38.4
Potri.013G105634 Populus trichocarpa HOM05D003774 ORTHO05D009174 3.5e-16 89.0 146 38.4
Dinv19855 Davidia involucrata HOM05D003774 ORTHO05D009174 3.3e-14 82.4 54 64.8
Sc09g0006790 Simmondsia chinensis HOM05D003774 ORTHO05D009174 5.6e-14 81.6 53 66.0
Medtr1g052490 Medicago truncatula HOM05D003774 ORTHO05D009174 9.5e-14 80.9 63 55.6
CBR_g29932 Chara braunii HOM05D003774 ORTHO05D009174 2.6e-11 72.8 94 37.2
SMO351G0384 Selaginella moellendorffii HOM05D004677 ORTHO05D005746 1.1e-06 57.4 128 35.9
Sc12g0002230 Simmondsia chinensis HOM05D004677 ORTHO05D005746 4.3e-06 55.5 161 31.7


User provided reference genes

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