Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc66.103 Carica papaya HOM05D004520 ORTHO05D005520 2.0e-167 592.4 311 100.0
Thecc.08G113500 Theobroma cacao HOM05D004520 ORTHO05D005520 1.5e-42 177.6 334 41.0
COL.COLO4_16493 Corchorus olitorius HOM05D004520 ORTHO05D005520 2.9e-41 173.3 331 40.8
Manes.02G156700 Manihot esculenta HOM05D004520 ORTHO05D005520 5.1e-38 162.5 328 38.1
Gorai.009G240500 Gossypium raimondii HOM05D004520 ORTHO05D005520 2.1e-36 157.1 321 36.8
Gohir.D05G232300 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.4e-35 154.5 318 36.2
Sabra05G0127300 Salix brachista HOM05D004520 ORTHO05D005520 5.2e-35 152.5 323 37.5
Potri.005G169900 Populus trichocarpa HOM05D004520 ORTHO05D005520 1.2e-34 151.4 292 39.0
CiPaw.05G232100 Carya illinoinensis HOM05D004520 ORTHO05D005520 5.8e-34 149.1 331 35.3
Gohir.A05G230000 Gossypium hirsutum HOM05D004520 ORTHO05D005520 2.9e-33 146.7 314 35.4
Prupe.1G510300 Prunus persica HOM05D004520 ORTHO05D005520 1.9e-29 134.0 228 43.4
Actinidia10293 Actinidia chinensis HOM05D001087 ORTHO05D005520 2.0e-26 124.0 195 40.5
QL12p035728 Quercus lobata HOM05D004520 ORTHO05D005520 4.4e-26 122.9 252 38.5
MD15G1409900 Malus domestica HOM05D004520 ORTHO05D005520 9.9e-26 121.7 220 40.5
FAN18G1022 Fragaria x ananassa HOM05D004520 ORTHO05D005520 2.9e-25 120.2 208 39.4
FvH4_5g38160 Fragaria vesca HOM05D004520 ORTHO05D005520 8.4e-25 118.6 208 38.9
FAN08G0369 Fragaria x ananassa HOM05D004520 ORTHO05D005520 8.4e-25 118.6 174 42.5
FAN04G0088 Fragaria x ananassa HOM05D004520 ORTHO05D005520 2.4e-24 117.1 234 38.5
Dinv44734 Davidia involucrata HOM05D001087 ORTHO05D001846 3.2e-24 116.7 325 35.1
FAN13G0916 Fragaria x ananassa HOM05D004520 ORTHO05D005520 9.3e-24 115.2 208 38.5
Ciclev10003675m.g Citrus clementina HOM05D004520 ORTHO05D005520 1.7e-22 110.9 313 33.9
BcaB03g11898 Brassica carinata HOM05D003425 ORTHO05D003897 1.5e-18 97.8 154 42.2
BcaB07g32230 Brassica carinata HOM05D004520 ORTHO05D005520 1.5e-18 97.8 156 42.3
BcaB03g14234 Brassica carinata HOM05D004520 ORTHO05D005520 2.0e-18 97.4 155 42.6
AT1G22110 Arabidopsis thaliana HOM05D004520 ORTHO05D005520 4.5e-18 96.3 153 44.4
A07p14760 Brassica napus HOM05D004520 ORTHO05D005520 4.5e-18 96.3 186 34.9
BraA07t29221Z Brassica rapa HOM05D004520 ORTHO05D005520 7.6e-18 95.5 125 44.0
AL1G35550 Arabidopsis lyrata HOM05D004520 ORTHO05D005520 9.9e-18 95.1 152 42.1
Manes.02G156600 Manihot esculenta HOM05D004520 ORTHO05D005520 9.9e-18 95.1 171 40.4
Glyma.14G168100 Glycine max HOM05D004520 ORTHO05D005520 1.3e-17 94.7 113 46.0
BolC8t49777H Brassica oleracea HOM05D004520 ORTHO05D005520 1.7e-17 94.4 124 46.8
Carub.0001s2166 Capsella rubella HOM05D004520 ORTHO05D005520 1.7e-17 94.4 152 41.4
Prupe.1G510900 Prunus persica HOM05D004520 ORTHO05D005520 1.7e-17 94.4 153 40.5
MD08G1176500 Malus domestica HOM05D004520 ORTHO05D005520 2.2e-17 94.0 143 42.7
CARHR022460 Cardamine hirsuta HOM05D004520 ORTHO05D005520 3.8e-17 93.2 157 42.0
TPR.G39080 Trifolium pratense HOM05D004520 ORTHO05D005520 3.8e-17 93.2 117 47.0
COL.COLO4_16491 Corchorus olitorius HOM05D004520 ORTHO05D005520 4.9e-17 92.8 172 37.2
QL12p035753 Quercus lobata HOM05D004520 ORTHO05D005520 4.9e-17 92.8 173 38.7
C05p21170 Brassica napus HOM05D004520 ORTHO05D005520 6.4e-17 92.4 142 43.7
BolC5t30811H Brassica oleracea HOM05D004520 ORTHO05D005520 6.4e-17 92.4 142 43.7
Haze_00561 Corylus avellana HOM05D004520 ORTHO05D005520 6.4e-17 92.4 133 43.6
Sabra05G0127200 Salix brachista HOM05D004520 ORTHO05D005520 6.4e-17 92.4 144 38.2
BcaC05g26135 Brassica carinata HOM05D004520 ORTHO05D005520 8.4e-17 92.0 142 43.0
Oeu024567.1 Olea europaea HOM05D004520 ORTHO05D005520 1.1e-16 91.7 165 37.6
CiPaw.06G022900 Carya illinoinensis HOM05D004520 ORTHO05D005520 1.9e-16 90.9 65 64.6
BcaC07g39145 Brassica carinata HOM05D003425 ORTHO05D003897 2.4e-16 90.5 154 40.3
A09p42670 Brassica napus HOM05D004520 ORTHO05D005520 2.4e-16 90.5 156 41.0
BraA09t39742Z Brassica rapa HOM05D004520 ORTHO05D005520 2.4e-16 90.5 156 41.0
Prupe.1G552400 Prunus persica HOM05D004520 ORTHO05D005520 2.4e-16 90.5 74 58.1
RcHm_v2.0_Chr7g0240121 Rosa chinensis HOM05D004520 ORTHO05D005520 2.4e-16 90.5 75 57.3
Lalb_Chr10g0102151 Lupinus albus HOM05D004520 ORTHO05D005520 3.2e-16 90.1 122 44.3
Lj1g0026094 Lotus japonicus HOM05D004520 ORTHO05D005520 4.2e-16 89.7 192 34.4
MBI02_g37831_MAGBIO Magnolia biondii HOM05D004520 ORTHO05D005520 4.2e-16 89.7 77 54.5
Cfa015929 Carpinus fangiana HOM05D004520 ORTHO05D005520 7.1e-16 89.0 138 40.6
Cc00_g24440 Coffea canephora HOM05D004520 ORTHO05D005520 7.1e-16 89.0 145 40.0
MD15G1363200 Malus domestica HOM05D004520 ORTHO05D005520 7.1e-16 89.0 191 35.1
Potri.005G166900 Populus trichocarpa HOM05D004520 ORTHO05D005520 7.1e-16 89.0 169 37.9
MD15G1408400 Malus domestica HOM05D004520 ORTHO05D005520 9.3e-16 88.6 73 58.9
Duzib041G0092 Durio zibethinus HOM05D004520 ORTHO05D005520 1.6e-15 87.8 170 38.8
Aa31LG7G6090 Aethionema arabicum HOM05D004520 ORTHO05D005520 2.7e-15 87.0 133 42.9
Ca_05234_v3 Cicer arietinum L. HOM05D004520 ORTHO05D005520 2.7e-15 87.0 137 40.9
Manes.18G070900 Manihot esculenta HOM05D004520 ORTHO05D005520 2.7e-15 87.0 65 61.5
Duzib041G0365 Durio zibethinus HOM05D004520 ORTHO05D005520 3.5e-15 86.7 170 38.8
CDE10G1290 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 4.6e-15 86.3 128 37.5
BolC7t42702H Brassica oleracea HOM05D004520 ORTHO05D005520 6.0e-15 85.9 152 40.8
CiPaw.05G232200 Carya illinoinensis HOM05D004520 ORTHO05D005520 7.9e-15 85.5 65 61.5
CDE10G0363 Ceratophyllum demersum HOM05D004520 ORTHO05D005520 7.9e-15 85.5 91 51.6
Dinv44735 Davidia involucrata HOM05D004520 ORTHO05D005520 7.9e-15 85.5 65 60.0
FAN13G2359 Fragaria x ananassa HOM05D004520 ORTHO05D005520 7.9e-15 85.5 177 36.2
Glyma.13G086100 Glycine max HOM05D004520 ORTHO05D005520 1.0e-14 85.1 76 56.6
Phvul.008G170000 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 1.0e-14 85.1 82 52.4
Haze_00560 Corylus avellana HOM05D004520 ORTHO05D005520 2.3e-14 84.0 141 39.0
Haze_00569 Corylus avellana HOM05D004520 ORTHO05D005520 2.3e-14 84.0 141 39.0
FAN18G4472 Fragaria x ananassa HOM05D004520 ORTHO05D005520 2.3e-14 84.0 174 36.8
Gohir.A06G039100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 2.3e-14 84.0 69 58.0
BcaC06g34928 Brassica carinata HOM05D004520 ORTHO05D005520 3.0e-14 83.6 152 41.4
C07p21720 Brassica napus HOM05D004520 ORTHO05D005520 3.0e-14 83.6 152 41.4
Duzib093G1357 Durio zibethinus HOM05D004520 ORTHO05D005520 3.0e-14 83.6 154 37.0
Migut.N02919 Erythranthe guttata HOM05D004520 ORTHO05D005520 3.0e-14 83.6 80 46.2
FvH4_5g38140 Fragaria vesca HOM05D004520 ORTHO05D000031 3.0e-14 83.6 174 36.2
Psat2g075760 Pisum sativum HOM05D004520 ORTHO05D005520 3.0e-14 83.6 130 44.6
PSO210G7148 Papaver somniferum HOM05D004520 ORTHO05D005520 3.9e-14 83.2 73 52.1
PSO447G0143 Papaver somniferum HOM05D004520 ORTHO05D005520 3.9e-14 83.2 73 52.1
FAN08G3230 Fragaria x ananassa HOM05D004520 ORTHO05D005520 5.1e-14 82.8 174 36.8
Gorai.010G044800 Gossypium raimondii HOM05D004520 ORTHO05D005520 5.1e-14 82.8 150 40.0
PGR042G0053 Punica granatum HOM05D004520 ORTHO05D005520 5.1e-14 82.8 169 36.1
FAN04G1722 Fragaria x ananassa HOM05D004520 ORTHO05D005520 6.7e-14 82.4 176 36.9
Potri.002G092000 Populus trichocarpa HOM05D004520 ORTHO05D005520 6.7e-14 82.4 172 36.6
arahy.Tifrunner.gnm1.ann1.1581IW Arachis hypogaea HOM05D004520 ORTHO05D005520 8.7e-14 82.0 150 34.7
Gohir.D06G040100 Gossypium hirsutum HOM05D004520 ORTHO05D005520 1.1e-13 81.6 130 42.3
Medtr5g061650 Medicago truncatula HOM05D004520 ORTHO05D005520 1.1e-13 81.6 124 42.7
Aqoxy6G00530 Aquilegia oxysepala HOM05D004520 ORTHO05D005520 1.9e-13 80.9 63 61.9
Cfa015930 Carpinus fangiana HOM05D004520 ORTHO05D005520 1.9e-13 80.9 225 34.7
Thecc.08G113300 Theobroma cacao HOM05D004520 ORTHO05D005520 3.3e-13 80.1 267 29.6
TWI56G1051 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 4.3e-13 79.7 169 36.1
MD08G1219800 Malus domestica HOM05D004520 ORTHO05D005520 9.6e-13 78.6 158 36.7
TWI12G0901 Tripterygium wilfordii HOM05D004520 ORTHO05D005520 9.6e-13 78.6 174 36.8
CsaV3_5G023830 Cucumis sativus L. HOM05D004520 ORTHO05D005520 1.6e-12 77.8 167 31.7
Duzib116G0626 Durio zibethinus HOM05D004520 ORTHO05D005520 1.6e-12 77.8 187 32.6
Peaxi162Scf00168g00043 Petunia axillaris HOM05D004520 ORTHO05D005520 2.1e-12 77.4 134 39.6
CANSAT25G0040 Cannabis sativa HOM05D004520 ORTHO05D005520 2.8e-12 77.0 63 58.7
CANSAT25G0424 Cannabis sativa HOM05D004520 ORTHO05D005520 2.8e-12 77.0 63 58.7
Nitab4.5_0006678g0010 Nicotiana tabacum HOM05D004520 ORTHO05D005520 2.8e-12 77.0 146 37.7
Peaxi162Scf00160g01523 Petunia axillaris HOM05D004520 ORTHO05D005520 2.8e-12 77.0 70 52.9
Atru.chr13.1276 Acer truncatum HOM05D004520 ORTHO05D005520 6.2e-12 75.9 64 57.8
MELO3C022817.2 Cucumis melo HOM05D004520 ORTHO05D005520 6.2e-12 75.9 117 35.9
Dinv13052 Davidia involucrata HOM05D004520 ORTHO05D005520 6.2e-12 75.9 230 30.0
arahy.Tifrunner.gnm1.ann1.8K5I59 Arachis hypogaea HOM05D004520 ORTHO05D005520 8.1e-12 75.5 150 36.0
PGSC0003DMG400027533 Solanum tuberosum HOM05D004520 ORTHO05D005520 1.1e-11 75.1 99 41.4
ClCG03G008900 Citrullus lanatus HOM05D004520 ORTHO05D005520 1.4e-11 74.7 171 31.6
Glyma.04G106800 Glycine max HOM05D016564 ORTHO05D019006 1.8e-11 74.3 259 32.4
Ciclev10003829m.g Citrus clementina HOM05D004520 ORTHO05D005520 2.4e-11 73.9 125 44.0
Gohir.D02G082633 Gossypium hirsutum HOM05D004520 ORTHO05D005520 6.9e-11 72.4 78 48.7
Sed0005622 Sechium edule HOM05D004520 ORTHO05D005520 9.0e-11 72.0 83 47.0
ClCG03G008910 Citrullus lanatus HOM05D004520 ORTHO05D005520 1.5e-10 71.2 70 47.1
Nitab4.5_0002534g0030 Nicotiana tabacum HOM05D004520 ORTHO05D005520 1.5e-10 71.2 159 40.3
Solyc04g072650.1 Solanum lycopersicum HOM05D004520 ORTHO05D005520 2.0e-10 70.9 79 44.3
Sopen04g028850 Solanum pennellii HOM05D004520 ORTHO05D005520 2.0e-10 70.9 79 44.3
Gohir.A02G075405 Gossypium hirsutum HOM05D004520 ORTHO05D005520 2.6e-10 70.5 142 38.0
ATR0564G398 Amborella trichopoda HOM05D004520 ORTHO05D005520 5.8e-10 69.3 59 59.3
TPR.G34 Trifolium pratense HOM05D004520 ORTHO05D005520 5.8e-10 69.3 114 40.4
Prupe.1G096600 Prunus persica HOM05D004520 ORTHO05D005520 7.6e-10 68.9 57 57.9
Gorai.005G092700 Gossypium raimondii HOM05D004520 ORTHO05D005520 3.8e-09 66.6 142 38.0
PGSC0003DMG400046169 Solanum tuberosum HOM05D004520 ORTHO05D005520 1.1e-08 65.1 92 40.2
Migut.C00189 Erythranthe guttata HOM05D004520 ORTHO05D005520 1.9e-08 64.3 68 47.1
SalBow6G4633 Salvia bowleyana HOM05D004520 ORTHO05D005520 7.1e-08 62.4 65 47.7
Sed0003147 Sechium edule HOM05D004520 ORTHO05D005520 7.1e-08 62.4 195 30.3
A08p28610 Brassica napus HOM05D003425 ORTHO05D003897 9.3e-08 62.0 95 44.2
BraA08t34791Z Brassica rapa HOM05D003425 ORTHO05D003897 9.3e-08 62.0 95 44.2
Gorai.009G282400 Gossypium raimondii HOM05D004520 ORTHO05D005520 2.1e-07 60.8 136 40.4
SalBow6G1129 Salvia bowleyana HOM05D004520 ORTHO05D005520 2.1e-07 60.8 65 46.2
Gohir.D05G269800 Gossypium hirsutum HOM05D004520 ORTHO05D005520 2.7e-07 60.5 136 41.2
Sp1g19610 Schrenkiella parvula HOM05D004520 ORTHO05D005520 2.7e-07 60.5 93 43.0
Gohir.A05G268200 Gossypium hirsutum HOM05D004520 ORTHO05D005520 3.5e-07 60.1 134 39.6
CAN.G689.16 Capsicum annuum HOM05D004520 ORTHO05D005520 4.6e-07 59.7 71 45.1
Actinidia30745 Actinidia chinensis HOM05D001087 ORTHO05D055498 6.0e-07 59.3 199 28.6
C08p21380 Brassica napus HOM05D003425 ORTHO05D003897 3.0e-06 57.0 95 42.1
SEGI_20648 Sequoiadendron giganteum HOM05D004520 ORTHO05D005520 3.9e-06 56.6 54 48.1
Phvul.009G027500 Phaseolus vulgaris HOM05D004520 ORTHO05D005520 6.7e-06 55.8 116 37.9
Medtr3g073650 Medicago truncatula HOM05D016564 ORTHO05D019006 8.7e-06 55.5 185 31.9


User provided reference genes

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