Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc66.1 Carica papaya HOM05D004571 ORTHO05D005334 2.7e-82 308.5 147 100.0
Thecc.08G192400 Theobroma cacao HOM05D004571 ORTHO05D005334 3.5e-37 158.7 92 79.3
COL.COLO4_24652 Corchorus olitorius HOM05D004571 ORTHO05D005334 7.7e-37 157.5 92 80.4
Prupe.1G555400 Prunus persica HOM05D004571 ORTHO05D005334 1.7e-36 156.4 92 79.3
MD15G1405800 Malus domestica HOM05D004571 ORTHO05D005334 5.0e-36 154.8 92 78.3
TWI14G1164 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 1.5e-35 153.3 87 81.6
Haze_21312 Corylus avellana HOM05D004571 ORTHO05D005334 1.2e-34 150.2 93 76.3
Atru.chr13.2366 Acer truncatum HOM05D004571 ORTHO05D005334 2.1e-34 149.4 90 76.7
MD08G1217900 Malus domestica HOM05D004571 ORTHO05D005334 2.7e-34 149.1 87 78.2
Gohir.D13G122900 Gossypium hirsutum HOM05D004571 ORTHO05D005334 3.6e-34 148.7 92 73.9
Ciclev10002721m.g Citrus clementina HOM05D004571 ORTHO05D005334 4.7e-34 148.3 91 76.9
Gohir.A13G119100 Gossypium hirsutum HOM05D004571 ORTHO05D005334 8.0e-34 147.5 92 72.8
Lj3g0024961 Lotus japonicus HOM05D004571 ORTHO05D005334 8.0e-34 147.5 87 77.0
CANSAT25G3741 Cannabis sativa HOM05D004571 ORTHO05D005334 1.0e-33 147.1 92 75.0
Gorai.013G137900 Gossypium raimondii HOM05D004571 ORTHO05D005334 1.0e-33 147.1 92 72.8
Gohir.D13G123000 Gossypium hirsutum HOM05D004571 ORTHO05D005334 1.4e-33 146.7 92 72.8
Gohir.A13G119200 Gossypium hirsutum HOM05D004571 ORTHO05D005334 3.0e-33 145.6 92 72.8
ClCG08G000160 Citrullus lanatus HOM05D004571 ORTHO05D005334 4.0e-33 145.2 94 69.1
CiPaw.07G235800 Carya illinoinensis HOM05D004571 ORTHO05D005334 5.2e-33 144.8 84 78.6
Ca_13497_v3 Cicer arietinum L. HOM05D004571 ORTHO05D005334 5.2e-33 144.8 88 76.1
TPR.G25514 Trifolium pratense HOM05D004571 ORTHO05D005334 5.2e-33 144.8 88 77.3
Glyma.04G256400 Glycine max HOM05D004571 ORTHO05D005334 8.8e-33 144.1 93 68.8
RcHm_v2.0_Chr7g0227581 Rosa chinensis HOM05D004571 ORTHO05D005334 1.5e-32 143.3 94 73.4
CsaV3_5G040560 Cucumis sativus L. HOM05D004571 ORTHO05D005334 2.0e-32 142.9 93 68.8
MELO3C022229.2 Cucumis melo HOM05D004571 ORTHO05D005334 2.6e-32 142.5 92 69.6
FAN13G1323 Fragaria x ananassa HOM05D004571 ORTHO05D005334 3.3e-32 142.1 94 73.4
Glyma.06G325200 Glycine max HOM05D004571 ORTHO05D005334 3.3e-32 142.1 87 71.3
Aa31LG4G8400 Aethionema arabicum HOM05D004571 ORTHO05D005334 4.4e-32 141.7 96 71.9
Carub.0002s1897 Capsella rubella HOM05D004571 ORTHO05D005334 7.5e-32 141.0 87 78.2
BcaB03g14960 Brassica carinata HOM05D004571 ORTHO05D005334 9.7e-32 140.6 93 72.0
FvH4_5g31700 Fragaria vesca HOM05D004571 ORTHO05D005334 1.7e-31 139.8 94 72.3
FAN18G0720 Fragaria x ananassa HOM05D004571 ORTHO05D005334 2.2e-31 139.4 94 71.3
Phvul.005G000100 Phaseolus vulgaris HOM05D004571 ORTHO05D005334 2.2e-31 139.4 90 70.0
AT1G72170 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 2.8e-31 139.0 87 74.7
THA.LOC104800135 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 2.8e-31 139.0 99 66.7
TAR381G0940 Trochodendron aralioides HOM05D004571 ORTHO05D005334 2.8e-31 139.0 92 75.0
A07p38280 Brassica napus HOM05D004571 ORTHO05D005334 3.7e-31 138.7 75 82.7
FAN04G0250 Fragaria x ananassa HOM05D004571 ORTHO05D005334 3.7e-31 138.7 94 71.3
Nn1g08340 Nelumbo nucifera HOM05D004571 ORTHO05D005334 3.7e-31 138.7 92 71.7
Manes.02G223200 Manihot esculenta HOM05D004571 ORTHO05D005334 4.8e-31 138.3 81 80.2
VMungo1080G1505 Vigna mungo HOM05D004571 ORTHO05D005334 4.8e-31 138.3 85 72.9
QL02p026432 Quercus lobata HOM05D004571 ORTHO05D005334 6.3e-31 137.9 89 71.9
AL2G31830 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 8.2e-31 137.5 94 70.2
BraA07t31392Z Brassica rapa HOM05D004571 ORTHO05D005334 8.2e-31 137.5 75 81.3
Sp5g27250 Schrenkiella parvula HOM05D004571 ORTHO05D005334 8.2e-31 137.5 95 69.5
Oeu044957.1 Olea europaea HOM05D004571 ORTHO05D005334 1.8e-30 136.3 100 69.0
CARHR065020 Cardamine hirsuta HOM05D004571 ORTHO05D005334 2.4e-30 136.0 98 65.3
C06p46340 Brassica napus HOM05D004571 ORTHO05D005334 3.1e-30 135.6 74 81.1
BolC6t39679H Brassica oleracea HOM05D004571 ORTHO05D005334 3.1e-30 135.6 74 81.1
Dinv41758 Davidia involucrata HOM05D004571 ORTHO05D005334 3.1e-30 135.6 90 74.4
Medtr3g005050 Medicago truncatula HOM05D004571 ORTHO05D005334 3.1e-30 135.6 89 73.0
Psat1g003360 Pisum sativum HOM05D004571 ORTHO05D005334 3.1e-30 135.6 88 72.7
CiPaw.08G002900 Carya illinoinensis HOM05D004571 ORTHO05D005334 4.1e-30 135.2 84 71.4
Duzib116G0804 Durio zibethinus HOM05D004571 ORTHO05D005334 4.1e-30 135.2 105 65.7
THA.LOC104809727 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 4.1e-30 135.2 106 65.1
GSVIVG01026083001 Vitis vinifera HOM05D004571 ORTHO05D005334 4.1e-30 135.2 92 71.7
PSO017G1736 Papaver somniferum HOM05D004571 ORTHO05D005334 5.3e-30 134.8 83 74.7
PSO170G5138 Papaver somniferum HOM05D004571 ORTHO05D005334 5.3e-30 134.8 83 74.7
Rhsim11G0053000 Rhododendron simsii HOM05D004571 ORTHO05D005334 7.0e-30 134.4 89 71.9
Hma1.2p1_0374F.1_g138460 Hydrangea macrophylla HOM05D004571 ORTHO05D005334 1.2e-29 133.7 87 72.4
TAR628G0297 Trochodendron aralioides HOM05D004571 ORTHO05D005334 1.6e-29 133.3 86 75.6
CANSAT56G3739 Cannabis sativa HOM05D004571 ORTHO05D005334 3.5e-29 132.1 88 68.2
C06p35100 Brassica napus HOM05D004571 ORTHO05D005334 7.7e-29 131.0 88 71.6
A07p30330 Brassica napus HOM05D004571 ORTHO05D005334 1.0e-28 130.6 75 78.7
BraA07t30670Z Brassica rapa HOM05D004571 ORTHO05D005334 1.0e-28 130.6 75 78.7
PGR042G2098 Punica granatum HOM05D004571 ORTHO05D005334 1.0e-28 130.6 81 72.8
Sc23g0001520 Simmondsia chinensis HOM05D004571 ORTHO05D005334 1.0e-28 130.6 96 64.6
Aa31LG7G6430 Aethionema arabicum HOM05D004571 ORTHO05D005334 1.3e-28 130.2 95 68.4
BolC6t38614H Brassica oleracea HOM05D004571 ORTHO05D005334 1.3e-28 130.2 88 70.5
HanXRQChr04g0101791 Helianthus annuus HOM05D004571 ORTHO05D005334 1.7e-28 129.8 94 67.0
Potri.013G105766 Populus trichocarpa HOM05D004571 ORTHO05D005334 3.8e-28 128.6 80 76.2
AT1G22520 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 6.5e-28 127.9 84 72.6
Thhalv10019513m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 6.5e-28 127.9 101 62.4
Sed0021715 Sechium edule HOM05D004571 ORTHO05D005334 8.5e-28 127.5 84 72.6
Nn5g27495 Nelumbo nucifera HOM05D004571 ORTHO05D005334 1.1e-27 127.1 92 70.7
CDE08G1034 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 1.5e-27 126.7 73 80.8
Potri.019G079101 Populus trichocarpa HOM05D004571 ORTHO05D005334 1.5e-27 126.7 89 67.4
AUR62004601 Chenopodium quinoa HOM05D004571 ORTHO05D005334 1.9e-27 126.3 82 69.5
AUR62023543 Chenopodium quinoa HOM05D004571 ORTHO05D005334 1.9e-27 126.3 82 69.5
AL1G36060 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 3.2e-27 125.6 70 81.4
Carub.0001s2205 Capsella rubella HOM05D004571 ORTHO05D005334 3.2e-27 125.6 70 81.4
CDE02G1838 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 4.2e-27 125.2 73 79.5
Actinidia29414 Actinidia chinensis HOM05D004571 ORTHO05D005334 5.5e-27 124.8 82 73.2
MD17G1233400 Malus domestica HOM05D004571 ORTHO05D005334 5.5e-27 124.8 92 65.2
CSS0010340 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 7.2e-27 124.4 87 70.1
HanXRQChr02g0036591 Helianthus annuus HOM05D004571 ORTHO05D005334 9.4e-27 124.0 82 73.2
BraA08t34777Z Brassica rapa HOM05D004571 ORTHO05D005334 1.6e-26 123.2 80 70.0
Hund27115 Selenicereus undatus HOM05D004571 ORTHO05D005334 1.6e-26 123.2 90 64.4
Ah.05g178570 Amaranthus hybridus HOM05D004571 ORTHO05D005334 2.1e-26 122.9 82 67.1
Sabra19G0089800 Salix brachista HOM05D004571 ORTHO05D005334 2.1e-26 122.9 89 66.3
A08p28490 Brassica napus HOM05D004571 ORTHO05D005334 2.7e-26 122.5 70 80.0
DCAR_014081 Daucus carota HOM05D004571 ORTHO05D005334 2.7e-26 122.5 80 71.2
BcaB03g11911 Brassica carinata HOM05D004571 ORTHO05D005334 4.7e-26 121.7 74 74.3
CARHR022880 Cardamine hirsuta HOM05D004571 ORTHO05D005334 6.1e-26 121.3 76 73.7
ECA247G3605 Erigeron canadensis HOM05D004571 ORTHO05D005334 6.1e-26 121.3 75 70.7
Migut.C01321 Erythranthe guttata HOM05D004571 ORTHO05D005334 6.1e-26 121.3 77 72.7
Lsat_1_v5_gn_1_25881 Lactuca sativa HOM05D004571 ORTHO05D005334 6.1e-26 121.3 86 70.9
Actinidia03516 Actinidia chinensis HOM05D004571 ORTHO05D005334 8.0e-26 120.9 90 68.9
Sabra13G0091300 Salix brachista HOM05D004571 ORTHO05D005334 1.0e-25 120.6 80 73.8
BcaC07g39167 Brassica carinata HOM05D004571 ORTHO05D005334 1.4e-25 120.2 80 68.8
C08p21600 Brassica napus HOM05D004571 ORTHO05D005334 1.4e-25 120.2 80 68.8
EL10Ac1g00135 Beta vulgaris HOM05D004571 ORTHO05D005334 1.8e-25 119.8 82 64.6
SalBow7G4145 Salvia bowleyana HOM05D004571 ORTHO05D005334 1.8e-25 119.8 80 67.5
BcaB03g14198 Brassica carinata HOM05D004571 ORTHO05D005334 2.3e-25 119.4 64 82.8
Sp1g20030 Schrenkiella parvula HOM05D004571 ORTHO05D005334 2.3e-25 119.4 81 70.4
arahy.Tifrunner.gnm1.ann1.ET922W Arachis hypogaea HOM05D004571 ORTHO05D005334 3.0e-25 119.0 75 72.0
arahy.Tifrunner.gnm1.ann1.Q0KDHL Arachis hypogaea HOM05D008831 ORTHO05D005334 3.0e-25 119.0 75 72.0
BolC8t49798H Brassica oleracea HOM05D004571 ORTHO05D005334 6.8e-25 117.9 64 82.8
ATR1136G048 Amborella trichopoda HOM05D004571 ORTHO05D005334 1.5e-24 116.7 76 72.4
Thhalv10009192m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 1.5e-24 116.7 80 70.0
Zm00001eb063990 Zea mays HOM05D004571 ORTHO05D005334 1.5e-24 116.7 82 64.6
SalBow5G3518 Salvia bowleyana HOM05D002016 ORTHO05D002251 4.4e-24 115.2 95 58.9
Zm00001eb211000 Zea mays HOM05D004571 ORTHO05D005334 7.5e-24 114.4 85 62.4
SEGI_09168 Sequoiadendron giganteum HOM05D004571 ORTHO05D005334 2.8e-23 112.5 67 73.1
Os03g0840900 Oryza sativa ssp. japonica HOM05D004571 ORTHO05D005334 3.7e-23 112.1 82 61.0
DCAR_017443 Daucus carota HOM05D004571 ORTHO05D005334 4.8e-23 111.7 87 64.4
unitig_26.g9866 Utricularia gibba HOM05D004571 ORTHO05D005334 4.8e-23 111.7 78 69.2
Aqoxy5G02645 Aquilegia oxysepala HOM05D004571 ORTHO05D005334 6.3e-23 111.3 66 78.8
Nitab4.5_0001463g0030 Nicotiana tabacum HOM05D004571 ORTHO05D005334 1.8e-22 109.8 67 73.1
Nitab4.5_0005616g0050 Nicotiana tabacum HOM05D004571 ORTHO05D005334 1.8e-22 109.8 67 73.1
MBI16_g31756_MAGBIO Magnolia biondii HOM05D004571 ORTHO05D005334 2.4e-22 109.4 67 74.6
CANSAT80G2522 Cannabis sativa HOM05D004571 ORTHO05D005334 4.1e-22 108.6 81 64.2
SGA_v2.0_scaffold24G10606 Striga asiatica HOM05D004571 ORTHO05D005334 4.1e-22 108.6 69 68.1
HanXRQChr13g0402341 Helianthus annuus HOM05D004571 ORTHO05D005334 5.4e-22 108.2 75 72.0
HPP92_012688 Vanilla planifolia HOM05D004571 ORTHO05D005334 5.4e-22 108.2 63 76.2
ECA246G2468 Erigeron canadensis HOM05D004571 ORTHO05D005334 7.0e-22 107.8 74 70.3
PGSC0003DMG400025645 Solanum tuberosum HOM05D004571 ORTHO05D005334 1.2e-21 107.1 69 68.1
Solyc11g027870.2 Solanum lycopersicum HOM05D004571 ORTHO05D005334 1.6e-21 106.7 69 69.6
Sopen11g022630 Solanum pennellii HOM05D004571 ORTHO05D005334 1.6e-21 106.7 69 69.6
HPP92_012699 Vanilla planifolia HOM05D004571 ORTHO05D005334 1.6e-21 106.7 63 74.6
Cc10_g09660 Coffea canephora HOM05D004571 ORTHO05D005334 3.8e-20 102.1 81 58.0
A07p14330 Brassica napus HOM05D004571 ORTHO05D005334 1.1e-19 100.5 64 70.3
BraA07t29189Z Brassica rapa HOM05D004571 ORTHO05D005334 1.1e-19 100.5 64 70.3
Peaxi162Scf00076g00210 Petunia axillaris HOM05D004571 ORTHO05D005334 1.9e-19 99.8 84 58.3
HPP92_016944 Vanilla planifolia HOM05D004571 ORTHO05D005334 4.2e-19 98.6 73 65.8
Pp3c5_3370 Physcomitrium patens HOM05D004571 ORTHO05D005334 1.0e-17 94.0 80 57.5
AagrBONN_evm.TU.Sc2ySwM_344.525 Anthoceros agrestis HOM05D004571 ORTHO05D005334 1.8e-17 93.2 72 58.3
Pp3c6_25110 Physcomitrium patens HOM05D004571 ORTHO05D005334 2.3e-17 92.8 68 63.2
PSO170G6605 Papaver somniferum HOM05D004571 ORTHO05D005334 4.0e-17 92.0 87 52.9
SMO170G0007 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 4.0e-17 92.0 63 66.7
CSS0023243 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 6.8e-17 91.3 61 68.9
Pp3c16_13970 Physcomitrium patens HOM05D004571 ORTHO05D005334 8.9e-17 90.9 65 64.6
CBR_g28554 Chara braunii HOM05D004571 ORTHO05D005334 2.6e-16 89.4 66 62.1
SalBow1G4736 Salvia bowleyana HOM05D004571 ORTHO05D005334 5.7e-16 88.2 56 71.4
C07p21100 Brassica napus HOM05D004571 ORTHO05D005334 9.8e-16 87.4 108 45.4
SalBow8G4375 Salvia bowleyana HOM05D004571 ORTHO05D005334 1.3e-15 87.0 56 69.6
Peaxi162Scf00688g00440 Petunia axillaris HOM05D004571 ORTHO05D005334 1.7e-15 86.7 72 54.2
AagrBONN_evm.TU.Sc2ySwM_117.1227 Anthoceros agrestis HOM05D004571 ORTHO05D005334 2.8e-15 85.9 65 60.0
SalBow7G3147 Salvia bowleyana HOM05D004571 ORTHO05D005334 4.9e-15 85.1 56 67.9
Mapoly0097s0059 Marchantia polymorpha HOM05D004571 ORTHO05D005334 8.3e-15 84.3 63 58.7
Gorai.013G138000 Gossypium raimondii HOM05D004571 ORTHO05D005334 9.2e-14 80.9 44 79.5
SalBow1G5773 Salvia bowleyana HOM05D004571 ORTHO05D005334 5.9e-13 78.2 56 64.3
TWI23G0269 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 5.6e-11 71.6 42 78.6
SMO356G0601 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 2.1e-10 69.7 63 44.4
PRCOL_00006286 Prasinoderma coloniale HOM05D004571 ORTHO05D005334 3.1e-09 65.9 60 50.0
BcaC06g34972 Brassica carinata HOM05D004571 ORTHO05D005334 6.4e-07 58.2 39 69.2


User provided reference genes

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