Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc659.4 Carica papaya HOM05D001216 ORTHO05D008355 7.8e-20 99.4 46 100.0
Duzib106G0833 Durio zibethinus HOM05D001216 ORTHO05D008355 5.6e-18 93.2 45 91.1
Gohir.A13G155300 Gossypium hirsutum HOM05D001216 ORTHO05D008355 5.6e-18 93.2 45 91.1
Gohir.D13G160100 Gossypium hirsutum HOM05D001216 ORTHO05D008355 5.6e-18 93.2 45 91.1
Gorai.013G181000 Gossypium raimondii HOM05D001216 ORTHO05D008355 5.6e-18 93.2 45 91.1
Thecc.05G209300 Theobroma cacao HOM05D001216 ORTHO05D008355 5.6e-18 93.2 45 91.1
Dinv29167 Davidia involucrata HOM05D001216 ORTHO05D008355 9.5e-18 92.4 45 86.7
Hma1.2p1_1235F.1_g269080 Hydrangea macrophylla HOM05D001216 ORTHO05D008355 9.5e-18 92.4 45 86.7
COL.COLO4_06399 Corchorus olitorius HOM05D001216 ORTHO05D008355 1.2e-17 92.0 45 91.1
CiPaw.05G238500 Carya illinoinensis HOM05D001216 ORTHO05D008355 1.6e-17 91.7 45 86.7
CSS0014281 Camellia sinensis var. sinensis HOM05D001216 ORTHO05D008355 2.1e-17 91.3 45 86.7
CSS0049591 Camellia sinensis var. sinensis HOM05D001216 ORTHO05D008355 2.1e-17 91.3 45 86.7
MSTRG.8578 Avicennia marina HOM05D001216 ORTHO05D008355 2.8e-17 90.9 45 86.7
Oeu061067.1 Olea europaea HOM05D001216 ORTHO05D008355 3.6e-17 90.5 45 82.2
arahy.Tifrunner.gnm1.ann1.4MFR3H Arachis hypogaea HOM05D001216 ORTHO05D008355 4.7e-17 90.1 45 86.7
arahy.Tifrunner.gnm1.ann1.LQ97JF Arachis hypogaea HOM05D001216 ORTHO05D008355 4.7e-17 90.1 45 86.7
Nitab4.5_0000021g0450 Nicotiana tabacum HOM05D001216 ORTHO05D008355 4.7e-17 90.1 45 84.4
Peaxi162Scf00745g00860 Petunia axillaris HOM05D001216 ORTHO05D008355 4.7e-17 90.1 45 84.4
Rhsim03G0220900 Rhododendron simsii HOM05D001216 ORTHO05D008355 4.7e-17 90.1 45 86.7
Manes.09G124400 Manihot esculenta HOM05D001216 ORTHO05D008355 6.2e-17 89.7 45 86.7
Cfa015879 Carpinus fangiana HOM05D001216 ORTHO05D008355 8.1e-17 89.4 45 84.4
Ciclev10018854m.g Citrus clementina HOM05D001216 ORTHO05D008355 8.1e-17 89.4 45 86.7
Cc02_g00370 Coffea canephora HOM05D001216 ORTHO05D008355 8.1e-17 89.4 45 82.2
Haze_00609 Corylus avellana HOM05D001216 ORTHO05D008355 8.1e-17 89.4 45 84.4
Psat0s769g0040 Pisum sativum HOM05D001216 ORTHO05D008355 8.1e-17 89.4 45 84.4
SalBow2G2269 Salvia bowleyana HOM05D001216 ORTHO05D008355 8.1e-17 89.4 45 84.4
Eucgr.K00092 Eucalyptus grandis HOM05D001216 ORTHO05D008355 1.1e-16 89.0 45 84.4
Potri.013G089000 Populus trichocarpa HOM05D001216 ORTHO05D008355 1.1e-16 89.0 45 86.7
vmacro06504 Vaccinium macrocarpon HOM05D001216 ORTHO05D008355 1.4e-16 88.6 45 84.4
GSVIVG01024422001 Vitis vinifera HOM05D001216 ORTHO05D008355 1.4e-16 88.6 45 86.7
unitig_52.g16851 Utricularia gibba HOM05D001216 ORTHO05D008355 1.8e-16 88.2 45 82.2
CAN.G303.74 Capsicum annuum HOM05D001216 ORTHO05D008355 2.3e-16 87.8 45 82.2
Ca_24450_v3 Cicer arietinum L. HOM05D001216 ORTHO05D008355 2.3e-16 87.8 45 82.2
Migut.F00951 Erythranthe guttata HOM05D001216 ORTHO05D008355 2.3e-16 87.8 45 82.2
Glyma.01G229200 Glycine max HOM05D001216 ORTHO05D008355 2.3e-16 87.8 45 82.2
Nitab4.5_0005081g0010 Nicotiana tabacum HOM05D001216 ORTHO05D008355 2.3e-16 87.8 45 82.2
TPR.G37925 Trifolium pratense HOM05D001216 ORTHO05D008355 2.3e-16 87.8 45 82.2
Prupe.2G324500 Prunus persica HOM05D001216 ORTHO05D008355 4.0e-16 87.0 45 82.2
Sed0005129 Sechium edule HOM05D001216 ORTHO05D008355 4.0e-16 87.0 45 82.2
Actinidia08740 Actinidia chinensis HOM05D001216 ORTHO05D008355 5.2e-16 86.7 45 84.4
ATR0829G059 Amborella trichopoda HOM05D001216 ORTHO05D008355 5.2e-16 86.7 45 84.4
ClCG10G009060 Citrullus lanatus HOM05D001216 ORTHO05D008355 5.2e-16 86.7 45 80.0
Glyma.11G012000 Glycine max HOM05D001216 ORTHO05D008355 5.2e-16 86.7 45 82.2
Phvul.002G038200 Phaseolus vulgaris HOM05D001216 ORTHO05D008355 5.2e-16 86.7 45 82.2
Sabra13G0069500 Salix brachista HOM05D001216 ORTHO05D008355 5.2e-16 86.7 45 84.4
QL09p024763 Quercus lobata HOM05D001216 ORTHO05D008355 6.8e-16 86.3 45 82.2
Atru.chr12.1986 Acer truncatum HOM05D001216 ORTHO05D008355 8.9e-16 85.9 45 80.0
CDE11G0509 Ceratophyllum demersum HOM05D001216 ORTHO05D008355 1.2e-15 85.5 45 82.2
FAN03G0335 Fragaria x ananassa HOM05D001216 ORTHO05D008355 1.2e-15 85.5 45 80.0
FAN10G1381 Fragaria x ananassa HOM05D001216 ORTHO05D008355 1.2e-15 85.5 45 80.0
MD07G1306500 Malus domestica HOM05D001216 ORTHO05D008355 1.2e-15 85.5 45 80.0
RcHm_v2.0_Chr1g0383931 Rosa chinensis HOM05D001216 ORTHO05D008355 1.2e-15 85.5 45 80.0
FvH4_7g33820 Fragaria vesca HOM05D001216 ORTHO05D008355 1.5e-15 85.1 45 80.0
PGR142G1409 Punica granatum HOM05D001216 ORTHO05D008355 1.5e-15 85.1 45 77.8
Actinidia34302 Actinidia chinensis HOM05D001216 ORTHO05D008355 2.0e-15 84.7 45 82.2
Medtr5g007870 Medicago truncatula HOM05D001216 ORTHO05D008355 2.0e-15 84.7 45 80.0
MELO3C024870.2 Cucumis melo HOM05D001216 ORTHO05D008355 3.4e-15 84.0 45 80.0
CsaV3_4G008710 Cucumis sativus L. HOM05D001216 ORTHO05D008355 3.4e-15 84.0 45 77.8
Solyc03g096900.4 Solanum lycopersicum HOM05D001216 ORTHO05D008355 3.4e-15 84.0 45 80.0
Sopen03g027650 Solanum pennellii HOM05D001216 ORTHO05D008355 3.4e-15 84.0 45 80.0
PGSC0003DMG400000537 Solanum tuberosum HOM05D001216 ORTHO05D008355 3.4e-15 84.0 45 80.0
CANSAT21G1267 Cannabis sativa HOM05D001216 ORTHO05D008355 4.4e-15 83.6 45 77.8
FAN01G2135 Fragaria x ananassa HOM05D001216 ORTHO05D008355 4.4e-15 83.6 45 77.8
VMungo1215G2356 Vigna mungo HOM05D001216 ORTHO05D008355 4.4e-15 83.6 45 80.0
ECA238G0596 Erigeron canadensis HOM05D001216 ORTHO05D008355 5.8e-15 83.2 45 75.6
Lalb_Chr16g0376611 Lupinus albus HOM05D001216 ORTHO05D008355 5.8e-15 83.2 45 80.0
CDE02G2862 Ceratophyllum demersum HOM05D001216 ORTHO05D008355 7.5e-15 82.8 45 82.2
TWI34G0259 Tripterygium wilfordii HOM05D001216 ORTHO05D008355 7.5e-15 82.8 45 73.3
Ah.13g072640 Amaranthus hybridus HOM05D001216 ORTHO05D008355 9.9e-15 82.4 45 73.3
Aqoxy7G00876 Aquilegia oxysepala HOM05D001216 ORTHO05D008355 9.9e-15 82.4 45 77.8
LjContig00222g0021656 Lotus japonicus HOM05D001216 ORTHO05D008355 9.9e-15 82.4 45 75.6
Sc25g0001170 Simmondsia chinensis HOM05D001216 ORTHO05D008355 9.9e-15 82.4 45 77.8
DCAR_010546 Daucus carota HOM05D001216 ORTHO05D008355 2.2e-14 81.3 45 80.0
Lsat_1_v5_gn_2_135361 Lactuca sativa HOM05D001216 ORTHO05D008355 2.2e-14 81.3 45 73.3
HanXRQChr14g0462961 Helianthus annuus HOM05D001216 ORTHO05D008355 2.9e-14 80.9 45 73.3
Lj3C889T5 Lonicera japonica HOM05D001216 ORTHO05D008355 4.9e-14 80.1 45 75.6
MBI04_g37552_MAGBIO Magnolia biondii HOM05D001216 ORTHO05D008355 4.9e-14 80.1 45 75.6
EL10Ac3g05091 Beta vulgaris HOM05D001216 ORTHO05D008355 8.3e-14 79.3 45 68.9
AUR62005907 Chenopodium quinoa HOM05D001216 ORTHO05D008355 8.3e-14 79.3 45 66.7
AUR62028160 Chenopodium quinoa HOM05D001216 ORTHO05D008355 8.3e-14 79.3 45 66.7
TAR374G0425 Trochodendron aralioides HOM05D001216 ORTHO05D008355 8.3e-14 79.3 45 77.8
Nn1g01970 Nelumbo nucifera HOM05D001216 ORTHO05D008355 1.1e-13 79.0 45 75.6
PSO675G9306 Papaver somniferum HOM05D001216 ORTHO05D008355 1.1e-13 79.0 44 79.5
Actinidia04569 Actinidia chinensis HOM05D001216 ORTHO05D008355 1.4e-13 78.6 44 75.0
Hund21094 Selenicereus undatus HOM05D001216 ORTHO05D008355 1.4e-13 78.6 45 71.1
MBI04_g36034_MAGBIO Magnolia biondii HOM05D001216 ORTHO05D008355 2.4e-13 77.8 45 73.3
Zm00001eb188060 Zea mays HOM05D001216 ORTHO05D008355 3.2e-13 77.4 45 71.1
Os02g0699400 Oryza sativa ssp. japonica HOM05D001216 ORTHO05D008355 1.2e-12 75.5 45 71.1
SGA_v2.0_scaffold59G20777 Striga asiatica HOM05D001216 ORTHO05D008355 1.2e-12 75.5 36 83.3
SEGI_10998 Sequoiadendron giganteum HOM05D001216 ORTHO05D008355 1.9e-10 68.2 44 68.2
Mapoly0035s0150 Marchantia polymorpha HOM05D001216 ORTHO05D008355 5.6e-10 66.6 45 64.4
Pp3c16_11940 Physcomitrium patens HOM05D001216 ORTHO05D008355 2.8e-09 64.3 44 61.4
SMO169G0151 Selaginella moellendorffii HOM05D001216 ORTHO05D008355 3.6e-09 63.9 45 66.7
CBR_g26129 Chara braunii HOM05D000019 ORTHO05D000002 4.0e-08 60.5 44 56.8


User provided reference genes

Program Settings