Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc65.93 Carica papaya HOM05D005473 ORTHO05D006543 1.2e-206 723.0 378 100.0
Prupe.1G320100 Prunus persica HOM05D005473 ORTHO05D006543 2.3e-117 426.4 363 64.2
QL01p003042 Quercus lobata HOM05D005473 ORTHO05D006543 5.1e-117 425.2 362 63.0
Ciclev10015542m.g Citrus clementina HOM05D005473 ORTHO05D006543 6.7e-117 424.9 357 64.4
Thecc.02G215500 Theobroma cacao HOM05D005473 ORTHO05D006543 6.7e-117 424.9 363 63.6
Gorai.009G342800 Gossypium raimondii HOM05D005473 ORTHO05D006543 8.7e-117 424.5 361 62.0
Gohir.D05G319500 Gossypium hirsutum HOM05D005473 ORTHO05D006543 1.9e-116 423.3 361 62.6
Sabra08G0095200 Salix brachista HOM05D005473 ORTHO05D006543 3.3e-116 422.5 355 64.5
Potri.008G126400 Populus trichocarpa HOM05D005473 ORTHO05D006543 1.3e-115 420.6 360 63.3
Gohir.A05G317600 Gossypium hirsutum HOM05D005473 ORTHO05D006543 1.6e-115 420.2 367 62.1
Dinv04903 Davidia involucrata HOM05D005473 ORTHO05D006543 1.4e-114 417.2 362 63.5
CiPaw.05G245400 Carya illinoinensis HOM05D005473 ORTHO05D006543 2.4e-114 416.4 363 62.3
Sabra16G0274100 Salix brachista HOM05D005473 ORTHO05D006543 5.3e-114 415.2 355 63.7
FAN17G2750 Fragaria x ananassa HOM05D005473 ORTHO05D006543 6.9e-114 414.8 357 62.7
TAR622G1045 Trochodendron aralioides HOM05D005473 ORTHO05D006543 9.9e-113 411.0 362 62.2
COL.COLO4_20121 Corchorus olitorius HOM05D005473 ORTHO05D006543 1.7e-112 410.2 362 61.3
FvH4_4g26380 Fragaria vesca HOM05D005473 ORTHO05D006543 1.7e-112 410.2 357 62.7
FAN12G0751 Fragaria x ananassa HOM05D005473 ORTHO05D006543 2.2e-112 409.8 357 62.5
FAN12G1468 Fragaria x ananassa HOM05D005473 ORTHO05D006543 2.2e-112 409.8 357 62.5
CSS0031478 Camellia sinensis var. sinensis HOM05D005473 ORTHO05D006543 6.4e-112 408.3 354 61.6
Cfa015813 Carpinus fangiana HOM05D000048 ORTHO05D000207 8.4e-112 407.9 361 60.4
FAN22G1873 Fragaria x ananassa HOM05D005473 ORTHO05D006543 8.4e-112 407.9 357 62.5
GSVIVG01011804001 Vitis vinifera HOM05D005473 ORTHO05D006543 4.2e-111 405.6 362 61.9
AL1G36530 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 7.1e-111 404.8 352 60.5
A09p41740 Brassica napus HOM05D005473 ORTHO05D006543 9.3e-111 404.4 352 60.5
RcHm_v2.0_Chr4g0434011 Rosa chinensis HOM05D005473 ORTHO05D006543 9.3e-111 404.4 364 61.8
BraA09t39663Z Brassica rapa HOM05D005473 ORTHO05D006543 2.1e-110 403.3 352 60.5
FAN07G2597 Fragaria x ananassa HOM05D005473 ORTHO05D006543 2.1e-110 403.3 357 61.9
Manes.14G109600 Manihot esculenta HOM05D005473 ORTHO05D006543 2.1e-110 403.3 368 61.1
Atru.chr11.335 Acer truncatum HOM05D005473 ORTHO05D006543 1.3e-109 400.6 357 61.6
AL2G30760 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 1.8e-109 400.2 358 60.9
Carub.0001s2247 Capsella rubella HOM05D005473 ORTHO05D006543 5.6e-108 395.2 352 59.1
SalBow8G1667 Salvia bowleyana HOM05D005473 ORTHO05D006543 5.6e-108 395.2 361 59.6
AT1G22970 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 1.3e-107 394.0 353 59.5
Thhalv10008033m.g Eutrema salsugineum HOM05D005473 ORTHO05D006543 1.6e-107 393.7 355 59.2
Aa31LG7G6980 Aethionema arabicum HOM05D005473 ORTHO05D006543 2.1e-107 393.3 363 56.7
Haze_00685 Corylus avellana HOM05D005473 ORTHO05D006543 8.1e-107 391.3 404 54.7
CARHR023350 Cardamine hirsuta HOM05D005473 ORTHO05D006543 1.1e-106 391.0 353 58.6
Hma1.2p1_0114F.1_g055460 Hydrangea macrophylla HOM05D005473 ORTHO05D006543 3.1e-106 389.4 362 59.9
Nn4g24024 Nelumbo nucifera HOM05D005473 ORTHO05D006543 5.3e-106 388.7 364 58.2
MSTRG.875 Avicennia marina HOM05D005473 ORTHO05D006543 9.0e-106 387.9 362 59.1
BcaB07g32295 Brassica carinata HOM05D005473 ORTHO05D006543 1.2e-105 387.5 354 59.6
C05p22180 Brassica napus HOM05D005473 ORTHO05D006543 2.6e-105 386.3 355 58.6
Eucgr.K00649 Eucalyptus grandis HOM05D005473 ORTHO05D006543 2.6e-105 386.3 358 57.8
Lj5g0028089 Lotus japonicus HOM05D005473 ORTHO05D006543 4.5e-105 385.6 361 57.3
vmacro01424 Vaccinium macrocarpon HOM05D005473 ORTHO05D006543 1.0e-104 384.4 366 59.0
CAN.G1489.13 Capsicum annuum HOM05D005473 ORTHO05D006543 3.8e-104 382.5 362 59.9
Cc11_g09260 Coffea canephora HOM05D005473 ORTHO05D006543 4.9e-104 382.1 359 58.5
PGSC0003DMG400030516 Solanum tuberosum HOM05D005473 ORTHO05D006543 4.9e-104 382.1 358 59.8
Solyc05g008520.3 Solanum lycopersicum HOM05D005473 ORTHO05D006543 1.9e-103 380.2 358 59.8
Sp5g26320 Schrenkiella parvula HOM05D005473 ORTHO05D006543 5.5e-103 378.6 361 57.3
Sopen05g004360 Solanum pennellii HOM05D005473 ORTHO05D006543 9.3e-103 377.9 358 59.5
TPR.G4908 Trifolium pratense HOM05D005473 ORTHO05D006543 9.3e-103 377.9 353 57.5
Atru.chr11.342 Acer truncatum HOM05D005473 ORTHO05D006543 1.2e-102 377.5 338 61.8
arahy.Tifrunner.gnm1.ann1.45PR62 Arachis hypogaea HOM05D005473 ORTHO05D006543 2.1e-102 376.7 361 57.9
arahy.Tifrunner.gnm1.ann1.GULV0C Arachis hypogaea HOM05D005473 ORTHO05D006543 2.1e-102 376.7 361 57.9
BraA07t31315Z Brassica rapa HOM05D005473 ORTHO05D006543 2.1e-102 376.7 357 57.1
CsaV3_5G034770 Cucumis sativus L. HOM05D005473 ORTHO05D006543 4.6e-102 375.6 361 57.6
Ca_30210_v3 Cicer arietinum L. HOM05D005473 ORTHO05D006543 7.9e-102 374.8 359 56.8
ECA246G4292 Erigeron canadensis HOM05D005473 ORTHO05D006543 7.9e-102 374.8 367 57.8
Glyma.20G123200 Glycine max HOM05D005473 ORTHO05D006543 7.9e-102 374.8 361 58.7
Lalb_Chr06g0165731 Lupinus albus HOM05D005473 ORTHO05D006543 1.0e-101 374.4 356 57.6
AT1G71150 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 1.3e-101 374.0 354 58.8
BolC5t30918H Brassica oleracea HOM05D005473 ORTHO05D006543 3.0e-101 372.9 355 56.1
Medtr1g109070 Medicago truncatula HOM05D005473 ORTHO05D006543 3.0e-101 372.9 354 56.5
BcaC05g26209 Brassica carinata HOM05D005473 ORTHO05D006543 5.1e-101 372.1 355 56.1
ClCG05G022330 Citrullus lanatus HOM05D005473 ORTHO05D006543 6.7e-101 371.7 361 58.2
Psat6g222680 Pisum sativum HOM05D005473 ORTHO05D006543 8.7e-101 371.3 352 56.0
Phvul.007G034400 Phaseolus vulgaris HOM05D005473 ORTHO05D006543 1.5e-100 370.5 355 57.2
Lsat_1_v5_gn_3_54040 Lactuca sativa HOM05D005473 ORTHO05D006543 3.3e-100 369.4 363 56.2
Sed0015008 Sechium edule HOM05D005473 ORTHO05D006543 7.4e-100 368.2 359 57.7
Sp1g20430 Schrenkiella parvula HOM05D005473 ORTHO05D006543 9.6e-100 367.9 352 56.8
Carub.0002s1804 Capsella rubella HOM05D005473 ORTHO05D006543 1.3e-99 367.5 356 57.3
VMungo0720G0454 Vigna mungo HOM05D005473 ORTHO05D006543 1.6e-99 367.1 360 56.1
HanXRQChr15g0477691 Helianthus annuus HOM05D005473 ORTHO05D006543 2.1e-99 366.7 345 57.1
Lj3A877T94 Lonicera japonica HOM05D005473 ORTHO05D006543 2.1e-99 366.7 406 53.2
THA.LOC104812031 Tarenaya hassleriana HOM05D005473 ORTHO05D006543 6.3e-99 365.2 299 63.9
Oeu059511.2 Olea europaea HOM05D005473 ORTHO05D006543 3.1e-98 362.8 352 56.8
Migut.L01020 Erythranthe guttata HOM05D005473 ORTHO05D006543 9.0e-98 361.3 363 55.6
CARHR064450 Cardamine hirsuta HOM05D005473 ORTHO05D006543 2.0e-97 360.1 357 54.1
PGR119G2355 Punica granatum HOM05D005473 ORTHO05D006543 2.9e-96 356.3 360 55.6
Dinv16166 Davidia involucrata HOM05D005473 ORTHO05D006543 4.2e-95 352.4 352 56.8
Rhsim12G0088500 Rhododendron simsii HOM05D005473 ORTHO05D006543 4.2e-95 352.4 424 49.3
AUR62002772 Chenopodium quinoa HOM05D005473 ORTHO05D006543 1.6e-94 350.5 351 54.7
Actinidia31990 Actinidia chinensis HOM05D005473 ORTHO05D006543 1.3e-93 347.4 325 58.8
Sc11g0003970 Simmondsia chinensis HOM05D005473 ORTHO05D006543 5.1e-93 345.5 345 55.4
AUR62037258 Chenopodium quinoa HOM05D005473 ORTHO05D006543 9.7e-92 341.3 352 53.4
PSO017G4790 Papaver somniferum HOM05D005473 ORTHO05D006543 1.1e-90 337.8 360 54.2
CANSAT01G2653 Cannabis sativa HOM05D005473 ORTHO05D006543 1.4e-90 337.4 357 54.9
MBI16_g29822_MAGBIO Magnolia biondii HOM05D005473 ORTHO05D006543 1.8e-90 337.0 369 52.8
SGA_v2.0_scaffold50G18546 Striga asiatica HOM05D005473 ORTHO05D006543 4.1e-90 335.9 353 53.5
BcaB03g14874 Brassica carinata HOM05D005473 ORTHO05D006543 9.1e-90 334.7 312 59.0
PSO782G5692 Papaver somniferum HOM05D005473 ORTHO05D006543 1.5e-89 334.0 363 52.3
Ah.03g138500 Amaranthus hybridus HOM05D005473 ORTHO05D006543 2.6e-89 333.2 336 53.9
EL10Ac6g14276 Beta vulgaris HOM05D005473 ORTHO05D006543 3.4e-89 332.8 384 51.0
PSO478G0709 Papaver somniferum HOM05D005473 ORTHO05D006543 3.4e-89 332.8 363 53.2
Peaxi162Scf00205g01024 Petunia axillaris HOM05D000048 ORTHO05D006543 4.5e-89 332.4 337 56.7
BcaC08g46554 Brassica carinata HOM05D005473 ORTHO05D006543 1.9e-87 327.0 339 53.7
Ca_23703_v3 Cicer arietinum L. HOM05D005473 ORTHO05D006543 5.5e-87 325.5 359 51.0
BolC6t39580H Brassica oleracea HOM05D005473 ORTHO05D006543 7.2e-87 325.1 334 53.6
Aqoxy5G03875 Aquilegia oxysepala HOM05D005473 ORTHO05D006543 3.6e-86 322.8 358 50.8
Potri.010G117100 Populus trichocarpa HOM05D005473 ORTHO05D006543 3.3e-84 316.2 295 59.7
Nitab4.5_0013146g0010 Nicotiana tabacum HOM05D005473 ORTHO05D006543 8.2e-83 311.6 305 58.7
DCAR_023622 Daucus carota HOM05D005473 ORTHO05D006543 1.5e-81 307.4 301 57.8
CDE07G0910 Ceratophyllum demersum HOM05D005473 ORTHO05D006543 8.5e-80 301.6 354 46.6
MELO3C012289.2 Cucumis melo HOM05D005473 ORTHO05D006543 1.1e-79 301.2 303 56.4
Duzib268G1740 Durio zibethinus HOM05D005473 ORTHO05D006543 1.1e-79 301.2 280 60.0
TWI79G1332 Tripterygium wilfordii HOM05D005473 ORTHO05D006543 9.4e-79 298.1 331 51.7
AT1G22980 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 3.0e-77 293.1 338 49.7
AL1G36540 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 3.3e-76 289.7 382 46.1
HPP92_020137 Vanilla planifolia HOM05D005473 ORTHO05D006543 1.7e-75 287.3 339 48.4
Os05g0554500 Oryza sativa ssp. japonica HOM05D005473 ORTHO05D006543 5.9e-73 278.9 360 44.7
A07p37530 Brassica napus HOM05D000048 ORTHO05D006543 2.2e-72 276.9 355 45.6
Thhalv10018995m.g Eutrema salsugineum HOM05D005473 ORTHO05D006543 4.2e-71 272.7 270 58.5
Zm00001eb295130 Zea mays HOM05D005473 ORTHO05D006543 4.2e-71 272.7 358 44.7
ATR0691G101 Amborella trichopoda HOM05D005473 ORTHO05D006543 3.6e-70 269.6 368 44.0
unitig_749.g14005 Utricularia gibba HOM05D005473 ORTHO05D006543 2.2e-67 260.4 281 52.7
Thecc.02G215400 Theobroma cacao HOM05D005473 ORTHO05D006543 9.4e-63 245.0 236 57.6
HanXRQChr15g0477701 Helianthus annuus HOM05D005473 ORTHO05D006543 3.0e-61 240.0 345 42.3
A01p19890 Brassica napus HOM05D005473 ORTHO05D006543 5.2e-61 239.2 232 57.3
SEGI_09717 Sequoiadendron giganteum HOM05D005473 ORTHO05D006543 1.6e-54 217.6 354 38.7
Glyma.10G267900 Glycine max HOM05D005473 ORTHO05D006543 1.2e-52 211.5 244 51.2
Actinidia33629 Actinidia chinensis HOM05D005473 ORTHO05D006543 2.0e-52 210.7 235 53.6
Duzib251G0055 Durio zibethinus HOM05D005473 ORTHO05D006543 2.4e-50 203.8 276 47.5
Migut.O00950 Erythranthe guttata HOM05D005473 ORTHO05D006543 1.6e-49 201.1 229 51.5
SMO202G0044 Selaginella moellendorffii HOM05D005473 ORTHO05D006543 2.8e-46 190.3 327 38.8
PSO384G2466 Papaver somniferum HOM05D005473 ORTHO05D006543 7.5e-44 182.2 301 41.9
AagrBONN_evm.TU.Sc2ySwM_344.5342 Anthoceros agrestis HOM05D005473 ORTHO05D006543 9.5e-39 165.2 357 34.5
C06p45240 Brassica napus HOM05D000048 ORTHO05D000207 4.7e-38 162.9 124 64.5
Rhsim03G0134600 Rhododendron simsii HOM05D005473 ORTHO05D006543 1.1e-37 161.8 235 47.2
Hund25017 Selenicereus undatus HOM05D005473 ORTHO05D006543 3.5e-33 146.7 126 60.3
PSO339G4228 Papaver somniferum HOM05D005473 ORTHO05D006543 6.0e-33 146.0 370 30.8
C06p45250 Brassica napus HOM05D005473 ORTHO05D006543 1.0e-32 145.2 173 48.0
Pp3c15_5840 Physcomitrium patens HOM05D005473 ORTHO05D006543 4.3e-31 139.8 444 26.8
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 1.6e-22 111.3 245 32.7
Oeu036129.1 Olea europaea HOM05D005473 ORTHO05D006543 2.0e-20 104.4 148 48.6
MSTRG.15906 Avicennia marina HOM05D005473 ORTHO05D006543 6.2e-14 82.8 55 69.1
MD13G1032300 Malus domestica HOM05D005473 ORTHO05D006543 6.4e-11 72.8 56 58.9
MD16G1034500 Malus domestica HOM05D005473 ORTHO05D006543 6.4e-11 72.8 62 54.8
AagrBONN_evm.TU.Sc2ySwM_117.2697 Anthoceros agrestis HOM05D005473 ORTHO05D006543 1.1e-10 72.0 153 32.7
MCO05G366 Micromonas commoda HOM05D005473 ORTHO05D006543 2.7e-09 67.4 293 23.5
CAN.G572.16 Capsicum annuum HOM05D005473 ORTHO05D006543 1.1e-07 62.0 140 31.4
HanXRQChr16g0524281 Helianthus annuus HOM05D005473 ORTHO05D006543 4.8e-06 56.6 39 69.2


User provided reference genes

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