Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc65.92 Carica papaya HOM05D004794 ORTHO05D005875 1.1e-107 393.3 201 100.0
Gohir.A12G142300 Gossypium hirsutum HOM05D004794 ORTHO05D005875 1.6e-53 213.4 363 42.1
Gohir.D12G147200 Gossypium hirsutum HOM05D004794 ORTHO05D005875 2.1e-53 213.0 363 41.9
Gorai.008G158400 Gossypium raimondii HOM05D004794 ORTHO05D005875 2.1e-53 213.0 363 41.9
Duzib268G0539 Durio zibethinus HOM05D004794 ORTHO05D005875 8.0e-53 211.1 331 44.4
PGR102G0643 Punica granatum HOM05D004794 ORTHO05D005875 6.4e-50 201.4 108 97.2
Cc11_g09270 Coffea canephora HOM05D004794 ORTHO05D005875 1.9e-49 199.9 108 95.4
RcHm_v2.0_Chr4g0434021 Rosa chinensis HOM05D004794 ORTHO05D005875 1.9e-49 199.9 108 96.3
Thecc.02G215600 Theobroma cacao HOM05D004794 ORTHO05D005875 1.9e-49 199.9 366 40.2
Ciclev10015744m.g Citrus clementina HOM05D004794 ORTHO05D005875 2.4e-49 199.5 362 41.4
MD13G1032500 Malus domestica HOM05D004794 ORTHO05D005875 2.4e-49 199.5 108 96.3
MD16G1034600 Malus domestica HOM05D004794 ORTHO05D005875 2.4e-49 199.5 108 96.3
Nn4g24023 Nelumbo nucifera HOM05D004794 ORTHO05D005875 2.4e-49 199.5 108 96.3
QL01p003046 Quercus lobata HOM05D004794 ORTHO05D005875 3.2e-49 199.1 107 96.3
TWI79G0577 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 3.2e-49 199.1 108 96.3
Dinv04904 Davidia involucrata HOM05D004794 ORTHO05D005875 4.1e-49 198.7 108 93.5
Thhalv10000946m.g Eutrema salsugineum HOM05D004794 ORTHO05D005875 4.1e-49 198.7 108 95.4
Manes.14G109500 Manihot esculenta HOM05D004794 ORTHO05D005875 4.1e-49 198.7 108 95.4
Potri.010G117200 Populus trichocarpa HOM05D004794 ORTHO05D005875 5.4e-49 198.4 108 95.4
THA.LOC104805049 Tarenaya hassleriana HOM05D004794 ORTHO05D005875 5.4e-49 198.4 108 94.4
TAR622G1294 Trochodendron aralioides HOM05D004794 ORTHO05D005875 5.4e-49 198.4 108 95.4
HPP92_027135 Vanilla planifolia HOM05D004794 ORTHO05D005875 5.4e-49 198.4 108 95.4
Actinidia31991 Actinidia chinensis HOM05D004794 ORTHO05D005875 7.0e-49 198.0 108 95.4
Prupe.1G320000 Prunus persica HOM05D004794 ORTHO05D005875 7.0e-49 198.0 108 95.4
AT2G01110 Arabidopsis thaliana HOM05D004794 ORTHO05D005875 9.2e-49 197.6 108 94.4
Carub.0005s0009 Capsella rubella HOM05D004794 ORTHO05D005875 9.2e-49 197.6 108 94.4
COL.COLO4_20120 Corchorus olitorius HOM05D004794 ORTHO05D005875 9.2e-49 197.6 108 94.4
CsaV3_5G034760 Cucumis sativus L. HOM05D004794 ORTHO05D005875 9.2e-49 197.6 108 94.4
Manes.06G063100 Manihot esculenta HOM05D004794 ORTHO05D005875 9.2e-49 197.6 107 93.5
TWI75G0950 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 9.2e-49 197.6 108 95.4
arahy.Tifrunner.gnm1.ann1.9SFQ4R Arachis hypogaea HOM05D004794 ORTHO05D005875 1.2e-48 197.2 108 93.5
arahy.Tifrunner.gnm1.ann1.B80FEM Arachis hypogaea HOM05D004794 ORTHO05D005875 1.2e-48 197.2 108 93.5
CSS0006530 Camellia sinensis var. sinensis HOM05D004794 ORTHO05D005875 1.2e-48 197.2 108 95.4
ClCG05G022340 Citrullus lanatus HOM05D004794 ORTHO05D005875 1.2e-48 197.2 108 94.4
MELO3C012288.2 Cucumis melo HOM05D004794 ORTHO05D005875 1.2e-48 197.2 108 94.4
CiPaw.05G245300 Carya illinoinensis HOM05D004794 ORTHO05D005875 1.6e-48 196.8 108 94.4
Aa31sc79G60 Aethionema arabicum HOM05D004794 ORTHO05D005875 2.0e-48 196.4 108 94.4
Dinv16165 Davidia involucrata HOM05D004794 ORTHO05D005875 2.0e-48 196.4 108 94.4
Lalb_Chr02g0145631 Lupinus albus HOM05D004794 ORTHO05D005875 2.0e-48 196.4 108 92.6
Sp2g12580 Schrenkiella parvula HOM05D004794 ORTHO05D005875 2.0e-48 196.4 108 94.4
Sc04g0005890 Simmondsia chinensis HOM05D004794 ORTHO05D005875 2.0e-48 196.4 108 93.5
AL5G10060 Arabidopsis lyrata HOM05D004794 ORTHO05D005875 2.7e-48 196.1 108 93.5
BcaB07g30424 Brassica carinata HOM05D004794 ORTHO05D005875 2.7e-48 196.1 108 93.5
BcaC03g16998 Brassica carinata HOM05D004794 ORTHO05D005875 2.7e-48 196.1 108 93.5
A02p31690 Brassica napus HOM05D004794 ORTHO05D005875 2.7e-48 196.1 108 93.5
C02p49070 Brassica napus HOM05D004794 ORTHO05D005875 2.7e-48 196.1 108 93.5
BolC2t10997H Brassica oleracea HOM05D004794 ORTHO05D005875 2.7e-48 196.1 108 93.5
BraA02t08175Z Brassica rapa HOM05D004794 ORTHO05D005875 2.7e-48 196.1 108 93.5
Hma1.2p1_0114F.1_g055470 Hydrangea macrophylla HOM05D004794 ORTHO05D005875 2.7e-48 196.1 108 92.6
PSO170G3473 Papaver somniferum HOM05D004794 ORTHO05D005875 2.7e-48 196.1 108 94.4
PSO445G0020 Papaver somniferum HOM05D004794 ORTHO05D005875 2.7e-48 196.1 108 94.4
Peaxi162Scf00205g01022 Petunia axillaris HOM05D004794 ORTHO05D005875 2.7e-48 196.1 108 94.4
Sed0004857 Sechium edule HOM05D004794 ORTHO05D005875 2.7e-48 196.1 108 93.5
CARHR143660 Cardamine hirsuta HOM05D004794 ORTHO05D005875 3.5e-48 195.7 108 92.6
Haze_00684 Corylus avellana HOM05D004794 ORTHO05D005875 3.5e-48 195.7 108 94.4
FAN07G1519 Fragaria x ananassa HOM05D004794 ORTHO05D005875 3.5e-48 195.7 108 94.4
FAN22G0499 Fragaria x ananassa HOM05D004794 ORTHO05D005875 3.5e-48 195.7 108 94.4
Glyma.10G268000 Glycine max HOM05D004794 ORTHO05D005875 3.5e-48 195.7 108 93.5
vmacro01423 Vaccinium macrocarpon HOM05D004794 ORTHO05D005875 3.5e-48 195.7 108 94.4
CAN.G1489.14 Capsicum annuum HOM05D004794 ORTHO05D005875 4.6e-48 195.3 108 93.5
Cfa015814 Carpinus fangiana HOM05D004794 ORTHO05D005875 4.6e-48 195.3 108 94.4
Glyma.20G123100 Glycine max HOM05D004794 ORTHO05D005875 4.6e-48 195.3 108 92.6
Psat6g222720 Pisum sativum HOM05D004794 ORTHO05D005875 4.6e-48 195.3 108 91.7
TAR374G0638 Trochodendron aralioides HOM05D004794 ORTHO05D005875 4.6e-48 195.3 108 91.7
GSVIVG01011805001 Vitis vinifera HOM05D004794 ORTHO05D005875 4.6e-48 195.3 108 93.5
Aqoxy5G03876 Aquilegia oxysepala HOM05D004794 ORTHO05D005875 6.0e-48 194.9 108 92.6
BcaC06g31333 Brassica carinata HOM05D004794 ORTHO05D005875 6.0e-48 194.9 108 92.6
BcaC06g34216 Brassica carinata HOM05D004794 ORTHO05D005875 6.0e-48 194.9 108 92.6
A06p44670 Brassica napus HOM05D004794 ORTHO05D005875 6.0e-48 194.9 108 92.6
C07p31580 Brassica napus HOM05D004794 ORTHO05D005875 6.0e-48 194.9 108 92.6
BolC7t43697H Brassica oleracea HOM05D004794 ORTHO05D005875 6.0e-48 194.9 108 92.6
BraA06t27340Z Brassica rapa HOM05D004794 ORTHO05D005875 6.0e-48 194.9 108 92.6
DCAR_007276 Daucus carota HOM05D004794 ORTHO05D005875 6.0e-48 194.9 108 92.6
Duzib251G0273 Durio zibethinus HOM05D004794 ORTHO05D005875 6.0e-48 194.9 108 92.6
Nitab4.5_0000350g0140 Nicotiana tabacum HOM05D004794 ORTHO05D005875 6.0e-48 194.9 108 93.5
Nitab4.5_0013146g0030 Nicotiana tabacum HOM05D004794 ORTHO05D005875 6.0e-48 194.9 108 93.5
Os01g0501700 Oryza sativa ssp. japonica HOM05D004794 ORTHO05D005875 6.0e-48 194.9 108 93.5
Solyc05g008530.3 Solanum lycopersicum HOM05D004794 ORTHO05D005875 6.0e-48 194.9 108 93.5
Sopen05g004370 Solanum pennellii HOM05D004794 ORTHO05D005875 6.0e-48 194.9 108 93.5
PGSC0003DMG400030563 Solanum tuberosum HOM05D004794 ORTHO05D005875 6.0e-48 194.9 108 93.5
ATR0691G049 Amborella trichopoda HOM05D004794 ORTHO05D005875 7.8e-48 194.5 108 92.6
EL10Ac6g14275 Beta vulgaris HOM05D004794 ORTHO05D005875 7.8e-48 194.5 108 93.5
Lj3A877T98 Lonicera japonica HOM05D004794 ORTHO05D005875 7.8e-48 194.5 108 92.6
Lj5g0022431 Lotus japonicus HOM05D004794 ORTHO05D005875 7.8e-48 194.5 108 91.7
Lalb_Chr06g0165741 Lupinus albus HOM05D004794 ORTHO05D005875 7.8e-48 194.5 108 91.7
Phvul.007G034300 Phaseolus vulgaris HOM05D004794 ORTHO05D005875 7.8e-48 194.5 108 91.7
FvH4_4g26390 Fragaria vesca HOM05D004794 ORTHO05D005875 1.0e-47 194.1 108 93.5
FAN12G0017 Fragaria x ananassa HOM05D004794 ORTHO05D005875 1.0e-47 194.1 108 93.5
FAN12G0914 Fragaria x ananassa HOM05D004794 ORTHO05D005875 1.0e-47 194.1 108 93.5
FAN17G0450 Fragaria x ananassa HOM05D004794 ORTHO05D005875 1.0e-47 194.1 108 93.5
HPP92_021566 Vanilla planifolia HOM05D004794 ORTHO05D005875 1.0e-47 194.1 108 93.5
CDE07G0253 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 1.3e-47 193.7 108 91.7
Ca_23704_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 1.3e-47 193.7 108 90.7
Ca_30211_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 1.3e-47 193.7 108 90.7
Eucgr.B02866 Eucalyptus grandis HOM05D004794 ORTHO05D005875 1.3e-47 193.7 108 93.5
Medtr1g109080 Medicago truncatula HOM05D004794 ORTHO05D005875 1.3e-47 193.7 108 89.8
Sabra10G0086800 Salix brachista HOM05D004794 ORTHO05D005875 1.3e-47 193.7 108 92.6
Sabra10G0088400 Salix brachista HOM05D004794 ORTHO05D005875 1.3e-47 193.7 108 92.6
Zm00001eb009240 Zea mays HOM05D004794 ORTHO05D005875 1.3e-47 193.7 108 91.7
Ah.03g138420 Amaranthus hybridus HOM05D004794 ORTHO05D005875 1.7e-47 193.4 108 92.6
MBI16_g29821_MAGBIO Magnolia biondii HOM05D004794 ORTHO05D005875 1.7e-47 193.4 108 92.6
AUR62002773 Chenopodium quinoa HOM05D004794 ORTHO05D005875 2.3e-47 193.0 108 92.6
HanXRQChr01g0013251 Helianthus annuus HOM05D004794 ORTHO05D005875 3.9e-47 192.2 108 91.7
Atru.chr11.334 Acer truncatum HOM05D004794 ORTHO05D005875 5.0e-47 191.8 108 92.6
Atru.chr11.341 Acer truncatum HOM05D004794 ORTHO05D005875 5.0e-47 191.8 108 92.6
Hund25018 Selenicereus undatus HOM05D004794 ORTHO05D005875 6.6e-47 191.4 108 91.7
HanXRQChr15g0477711 Helianthus annuus HOM05D004794 ORTHO05D005875 8.6e-47 191.0 108 89.8
CDE06G2233 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 1.1e-46 190.7 108 89.8
Lsat_1_v5_gn_3_54000 Lactuca sativa HOM05D004794 ORTHO05D005875 1.9e-46 189.9 108 88.0
Lj6A750T92 Lonicera japonica HOM05D004794 ORTHO05D005875 2.5e-46 189.5 108 90.7
CANSAT01G0565 Cannabis sativa HOM05D004794 ORTHO05D005875 3.3e-46 189.1 108 89.8
ECA234G2688 Erigeron canadensis HOM05D004794 ORTHO05D005875 3.3e-46 189.1 108 88.9
MSTRG.13564 Avicennia marina HOM05D004794 ORTHO05D005875 5.6e-46 188.3 108 88.9
ECA246G3704 Erigeron canadensis HOM05D004794 ORTHO05D005875 7.3e-46 188.0 108 88.0
Lsat_1_v5_gn_4_15760 Lactuca sativa HOM05D004794 ORTHO05D005875 7.3e-46 188.0 108 89.8
HanXRQChr17g0567091 Helianthus annuus HOM05D004794 ORTHO05D005875 9.5e-46 187.6 108 88.9
Oeu048392.1 Olea europaea HOM05D004794 ORTHO05D005875 1.2e-45 187.2 108 87.0
EL10Ac4g08742 Beta vulgaris HOM05D004794 ORTHO05D005875 2.8e-45 186.0 106 88.7
SEGI_17562 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 2.8e-45 186.0 104 90.4
HPP92_020138 Vanilla planifolia HOM05D004794 ORTHO05D005875 2.8e-45 186.0 108 88.0
DCAR_030186 Daucus carota HOM05D004794 ORTHO05D005875 3.6e-45 185.7 102 92.2
SalBow8G5373 Salvia bowleyana HOM05D004794 ORTHO05D005875 6.2e-45 184.9 108 87.0
Migut.E00392 Erythranthe guttata HOM05D004794 ORTHO05D005875 1.4e-44 183.7 108 86.1
Oeu029170.1 Olea europaea HOM05D004794 ORTHO05D005875 1.8e-44 183.3 108 86.1
Pp3c3_36440 Physcomitrium patens HOM05D004794 ORTHO05D005875 1.8e-44 183.3 112 85.7
SGA_v2.0_scaffold376G50295 Striga asiatica HOM05D004794 ORTHO05D005875 8.9e-44 181.0 108 87.0
Migut.L01019 Erythranthe guttata HOM05D004794 ORTHO05D005875 4.4e-43 178.7 108 86.1
Pp3c8_3800 Physcomitrium patens HOM05D004794 ORTHO05D005875 4.4e-43 178.7 103 88.3
SalBow8G4147 Salvia bowleyana HOM05D004794 ORTHO05D005875 7.5e-43 177.9 108 86.1
SMO119G0095 Selaginella moellendorffii HOM05D004794 ORTHO05D005875 1.7e-42 176.8 104 87.5
Zm00001eb399680 Zea mays HOM05D004794 ORTHO05D005875 2.2e-42 176.4 99 91.9
CBR_g19219 Chara braunii HOM05D004794 ORTHO05D005875 4.9e-42 175.3 103 85.4
AagrBONN_evm.TU.Sc2ySwM_368.2774 Anthoceros agrestis HOM05D004794 ORTHO05D005875 1.1e-41 174.1 103 84.5
VMungo0720G1627 Vigna mungo HOM05D004794 ORTHO05D005875 1.1e-41 174.1 96 92.7
Mapoly0010s0061 Marchantia polymorpha HOM05D004794 ORTHO05D005875 1.2e-40 170.6 103 83.5
PRCOL_00000588 Prasinoderma coloniale HOM05D004794 ORTHO05D005875 6.6e-39 164.9 103 78.6
Rhsim12G0088300 Rhododendron simsii HOM05D004794 ORTHO05D005875 1.1e-38 164.1 183 56.3
Cre03.g145887 Chlamydomonas reinhardtii HOM05D004794 ORTHO05D005875 2.5e-38 162.9 104 78.8
MCO02G003 Micromonas commoda HOM05D004794 ORTHO05D005875 6.2e-37 158.3 112 75.9
AUR62037257 Chenopodium quinoa HOM05D004794 ORTHO05D005875 1.2e-35 154.1 198 50.5
TPR.G4856 Trifolium pratense HOM05D004794 ORTHO05D005875 1.9e-25 120.2 63 92.1
BolC9t55859H Brassica oleracea HOM05D004794 ORTHO05D005875 2.8e-21 106.3 64 89.1
unitig_8.g3988 Utricularia gibba HOM05D004794 ORTHO05D005875 4.7e-21 105.5 61 86.9
Oeu022847.1 Olea europaea HOM05D004794 ORTHO05D005875 5.3e-12 75.5 42 90.5
SEGI_30482 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 4.2e-09 65.9 43 79.1
SEGI_31512 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 1.2e-08 64.3 39 84.6


User provided reference genes

Program Settings