Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc65.90 Carica papaya HOM05D005638 ORTHO05D006913 3.0e-210 734.9 375 100.0
Ciclev10015376m.g Citrus clementina HOM05D005638 ORTHO05D006913 2.3e-162 575.9 384 76.8
Manes.10G073400 Manihot esculenta HOM05D005638 ORTHO05D006913 8.8e-162 573.9 366 76.8
Potri.008G126300 Populus trichocarpa HOM05D005638 ORTHO05D006913 8.2e-160 567.4 383 74.9
Thecc.05G134700 Theobroma cacao HOM05D005638 ORTHO05D006913 2.0e-158 562.8 383 75.7
Haze_00683 Corylus avellana HOM05D005638 ORTHO05D006913 4.2e-156 555.1 389 73.5
CSS0002078 Camellia sinensis var. sinensis HOM05D005638 ORTHO05D006913 9.4e-156 553.9 382 72.8
CSS0005399 Camellia sinensis var. sinensis HOM05D005638 ORTHO05D006913 9.4e-156 553.9 382 72.8
Sabra08G0095100 Salix brachista HOM05D005638 ORTHO05D006913 1.2e-155 553.5 373 74.8
CARHR143670 Cardamine hirsuta HOM05D005638 ORTHO05D006913 4.7e-155 551.6 383 72.1
TWI75G0624 Tripterygium wilfordii HOM05D005638 ORTHO05D006913 6.1e-155 551.2 382 73.6
FvH4_4g26400 Fragaria vesca HOM05D005638 ORTHO05D006913 1.0e-154 550.4 382 73.8
Prupe.1G319900 Prunus persica HOM05D005638 ORTHO05D006913 1.0e-154 550.4 382 73.3
FAN12G2479 Fragaria x ananassa HOM05D005638 ORTHO05D006913 2.3e-154 549.3 382 73.6
QL01p003053 Quercus lobata HOM05D005638 ORTHO05D006913 2.3e-154 549.3 404 71.5
Gorai.013G001800 Gossypium raimondii HOM05D005638 ORTHO05D006913 4.0e-154 548.5 383 72.6
FAN12G3267 Fragaria x ananassa HOM05D005638 ORTHO05D006913 6.7e-154 547.7 382 73.6
Sp2g12590 Schrenkiella parvula HOM05D005638 ORTHO05D006913 8.8e-154 547.4 383 71.8
BcaC06g31332 Brassica carinata HOM05D005638 ORTHO05D006913 2.6e-153 545.8 383 70.8
Hma1.2p1_0882F.1_g232180 Hydrangea macrophylla HOM05D005638 ORTHO05D006913 3.3e-153 545.4 373 74.3
COL.COLO4_22224 Corchorus olitorius HOM05D005638 ORTHO05D006913 4.4e-153 545.0 383 73.1
Gohir.A13G000300 Gossypium hirsutum HOM05D005638 ORTHO05D006913 1.7e-152 543.1 383 72.3
MELO3C034164.2 Cucumis melo HOM05D005638 ORTHO05D006913 4.8e-152 541.6 381 72.4
Carub.0005s0010 Capsella rubella HOM05D005638 ORTHO05D006913 2.4e-151 539.3 383 71.0
CsaV3_5G010590 Cucumis sativus L. HOM05D005638 ORTHO05D006913 9.1e-151 537.3 381 71.9
AL5G10070 Arabidopsis lyrata HOM05D005638 ORTHO05D006913 2.0e-150 536.2 383 69.2
Thhalv10000894m.g Eutrema salsugineum HOM05D005638 ORTHO05D006913 7.7e-150 534.3 389 68.9
BcaC06g34215 Brassica carinata HOM05D005638 ORTHO05D006913 1.3e-149 533.5 411 66.7
A06p44660 Brassica napus HOM05D005638 ORTHO05D006913 1.7e-149 533.1 411 66.9
THA.LOC104805050 Tarenaya hassleriana HOM05D005638 ORTHO05D006913 2.2e-149 532.7 381 70.1
ClCG07G004650 Citrullus lanatus HOM05D005638 ORTHO05D006913 5.0e-149 531.6 390 71.3
Sed0003483 Sechium edule HOM05D005638 ORTHO05D006913 5.0e-149 531.6 381 71.9
C07p31590 Brassica napus HOM05D005638 ORTHO05D006913 6.5e-149 531.2 411 66.4
CAN.G1489.15 Capsicum annuum HOM05D005638 ORTHO05D006913 8.5e-149 530.8 380 69.7
Nn4g24022 Nelumbo nucifera HOM05D005638 ORTHO05D006913 1.5e-148 530.0 382 70.7
arahy.Tifrunner.gnm1.ann1.CLD3MC Arachis hypogaea HOM05D005638 ORTHO05D006913 2.5e-148 529.3 382 70.2
Nitab4.5_0000350g0120 Nicotiana tabacum HOM05D005638 ORTHO05D006913 3.2e-148 528.9 389 69.7
CANSAT01G0033 Cannabis sativa HOM05D005638 ORTHO05D006913 5.5e-148 528.1 380 72.1
GSVIVG01011806001 Vitis vinifera HOM05D005638 ORTHO05D006913 7.2e-148 527.7 381 72.4
Sopen05g004380 Solanum pennellii HOM05D005638 ORTHO05D006913 1.2e-147 526.9 380 69.2
Solyc05g008540.3 Solanum lycopersicum HOM05D005638 ORTHO05D006913 2.1e-147 526.2 380 69.2
arahy.Tifrunner.gnm1.ann1.NRC6UQ Arachis hypogaea HOM05D005638 ORTHO05D006913 2.7e-147 525.8 382 69.9
PGSC0003DMG401030517 Solanum tuberosum HOM05D005638 ORTHO05D006913 2.7e-147 525.8 381 68.5
Eucgr.H00037 Eucalyptus grandis HOM05D005638 ORTHO05D006913 3.6e-147 525.4 379 70.2
Phvul.007G034200 Phaseolus vulgaris HOM05D005638 ORTHO05D006913 8.0e-147 524.2 382 70.2
Cc11_g09280 Coffea canephora HOM05D005638 ORTHO05D006913 1.4e-146 523.5 382 68.6
FAN07G1772 Fragaria x ananassa HOM05D005638 ORTHO05D006913 1.8e-146 523.1 425 66.4
Hund25015 Selenicereus undatus HOM05D005638 ORTHO05D006913 1.8e-146 523.1 382 69.4
ECA246G4189 Erigeron canadensis HOM05D005638 ORTHO05D006913 4.0e-146 521.9 381 68.8
Lj5g0007245 Lotus japonicus HOM05D005638 ORTHO05D006913 4.0e-146 521.9 379 70.7
MD16G1034700 Malus domestica HOM05D005638 ORTHO05D006913 4.0e-146 521.9 386 70.7
RcHm_v2.0_Chr4g0434031 Rosa chinensis HOM05D005638 ORTHO05D006913 6.8e-146 521.2 382 70.2
Psat6g222760 Pisum sativum HOM05D005638 ORTHO05D006913 2.6e-145 519.2 382 68.6
Medtr1g109100 Medicago truncatula HOM05D005638 ORTHO05D006913 4.4e-145 518.5 382 68.3
Lalb_Chr02g0145641 Lupinus albus HOM05D005638 ORTHO05D006913 1.3e-144 516.9 381 68.2
Lj2C166G5 Lonicera japonica HOM05D005638 ORTHO05D006913 2.2e-144 516.2 359 73.5
AT2G01120 Arabidopsis thaliana HOM05D005638 ORTHO05D006913 4.8e-144 515.0 384 67.7
DCAR_001932 Daucus carota HOM05D005638 ORTHO05D006913 4.8e-144 515.0 391 66.2
EL10Ac6g14273 Beta vulgaris HOM05D005638 ORTHO05D006913 1.8e-143 513.1 382 66.8
Ca_30212_v3 Cicer arietinum L. HOM05D005638 ORTHO05D006913 3.5e-142 508.8 377 68.2
Aa31LG2G8760 Aethionema arabicum HOM05D005638 ORTHO05D006913 4.5e-142 508.4 392 66.8
PGR119G2299 Punica granatum HOM05D005638 ORTHO05D006913 1.3e-141 506.9 379 67.8
Migut.E00391 Erythranthe guttata HOM05D005638 ORTHO05D006913 1.7e-141 506.5 382 68.1
Atru.chr11.333 Acer truncatum HOM05D005638 ORTHO05D006913 1.9e-140 503.1 337 74.8
MSTRG.2199 Avicennia marina HOM05D005638 ORTHO05D006913 2.5e-140 502.7 382 68.1
Glyma.10G268100 Glycine max HOM05D005638 ORTHO05D006913 3.3e-140 502.3 382 68.8
Peaxi162Scf00205g01130 Petunia axillaris HOM05D005638 ORTHO05D006913 4.2e-140 501.9 373 67.8
Sc14g0007070 Simmondsia chinensis HOM05D005638 ORTHO05D006913 7.2e-140 501.1 382 67.5
HanXRQChr17g0534901 Helianthus annuus HOM05D005638 ORTHO05D006913 1.2e-139 500.4 382 66.8
Glyma.20G123000 Glycine max HOM05D005638 ORTHO05D006913 4.7e-139 498.4 382 68.6
Lsat_1_v5_gn_3_11020 Lactuca sativa HOM05D005638 ORTHO05D006913 6.1e-139 498.0 383 67.1
Oeu064207.2 Olea europaea HOM05D005638 ORTHO05D006913 2.3e-138 496.1 427 62.8
MBI10_g06749_MAGBIO Magnolia biondii HOM05D005638 ORTHO05D006913 1.7e-136 490.0 344 70.1
CiPaw.05G245200 Carya illinoinensis HOM05D005638 ORTHO05D006913 4.9e-136 488.4 382 66.2
Nitab4.5_0013146g0020 Nicotiana tabacum HOM05D005638 ORTHO05D006913 1.1e-135 487.3 449 58.4
BcaB07g30423 Brassica carinata HOM05D005638 ORTHO05D006913 3.1e-135 485.7 409 63.1
Duzib106G1906 Durio zibethinus HOM05D005638 ORTHO05D006913 4.1e-135 485.3 380 66.6
AUR62042716 Chenopodium quinoa HOM05D005638 ORTHO05D006913 9.2e-135 484.2 414 60.6
BraA06t27339Z Brassica rapa HOM05D005638 ORTHO05D006913 3.9e-133 478.8 387 64.6
FAN22G2072 Fragaria x ananassa HOM05D005638 ORTHO05D006913 1.9e-132 476.5 404 63.4
Aqoxy5G03877 Aquilegia oxysepala HOM05D005638 ORTHO05D006913 4.3e-132 475.3 380 64.5
vmacro10617 Vaccinium macrocarpon HOM05D005638 ORTHO05D006913 3.1e-130 469.2 426 59.6
FAN17G1216 Fragaria x ananassa HOM05D005638 ORTHO05D006913 6.8e-130 468.0 405 63.5
Dinv16164 Davidia involucrata HOM05D005638 ORTHO05D006913 8.9e-130 467.6 331 72.2
HPP92_020141 Vanilla planifolia HOM05D005638 ORTHO05D006913 6.0e-126 454.9 381 59.1
Os01g0683400 Oryza sativa ssp. japonica HOM05D005638 ORTHO05D006913 8.6e-125 451.1 427 55.5
Gohir.D13G001900 Gossypium hirsutum HOM05D005638 ORTHO05D006913 5.2e-122 441.8 383 62.1
VMungo0720G2401 Vigna mungo HOM05D005638 ORTHO05D006913 5.2e-122 441.8 332 67.5
ATR0691G289 Amborella trichopoda HOM05D005638 ORTHO05D006913 3.4e-121 439.1 384 61.5
SEGI_39107 Sequoiadendron giganteum HOM05D005638 ORTHO05D006913 9.8e-121 437.6 382 60.5
SalBow8G2600 Salvia bowleyana HOM05D005638 ORTHO05D006913 8.3e-120 434.5 388 60.1
PSO782G2730 Papaver somniferum HOM05D005638 ORTHO05D006913 1.2e-118 430.6 373 60.9
PSO017G2298 Papaver somniferum HOM05D005638 ORTHO05D006913 1.6e-118 430.3 373 61.1
PSO478G2841 Papaver somniferum HOM05D005638 ORTHO05D006913 7.8e-118 427.9 373 60.9
unitig_52.g17425 Utricularia gibba HOM05D005638 ORTHO05D006913 6.8e-114 414.8 354 59.0
Rhsim11G0032100 Rhododendron simsii HOM05D005638 ORTHO05D006913 7.5e-113 411.4 285 72.3
Atru.chr11.340 Acer truncatum HOM05D005638 ORTHO05D006913 6.4e-112 408.3 271 77.1
TAR622G0052 Trochodendron aralioides HOM05D005638 ORTHO05D006913 6.8e-106 388.3 327 64.8
Zm00001eb156550 Zea mays HOM05D005638 ORTHO05D006913 8.9e-106 387.9 366 55.5
Ah.03g138510 Amaranthus hybridus HOM05D005638 ORTHO05D006913 1.9e-103 380.2 284 65.8
TPR.G31713 Trifolium pratense HOM05D005638 ORTHO05D006913 3.9e-101 372.5 265 70.6
Dinv04905 Davidia involucrata HOM05D005638 ORTHO05D006913 5.3e-98 362.1 366 56.8
BcaC03g16999 Brassica carinata HOM05D005638 ORTHO05D006913 1.1e-92 344.4 243 70.8
Pp3c16_11150 Physcomitrium patens HOM05D005638 ORTHO05D006913 1.1e-87 327.8 376 46.8
CBR_g38777 Chara braunii HOM05D005638 ORTHO05D006913 3.2e-87 326.2 385 48.3
C02p49080 Brassica napus HOM05D005638 ORTHO05D006913 1.0e-85 321.2 251 64.5
BolC2t10998H Brassica oleracea HOM05D005638 ORTHO05D006913 3.0e-85 319.7 299 57.9
Mapoly0031s0066 Marchantia polymorpha HOM05D005638 ORTHO05D006913 1.1e-82 311.2 376 47.9
A02p31700 Brassica napus HOM05D005638 ORTHO05D006913 5.8e-81 305.4 319 54.5
AUR62014211 Chenopodium quinoa HOM05D005638 ORTHO05D006913 3.1e-74 283.1 311 52.1
Cfa015815 Carpinus fangiana HOM05D005638 ORTHO05D006913 1.7e-72 277.3 187 77.0
Ca_23705_v3 Cicer arietinum L. HOM05D005638 ORTHO05D006913 2.2e-72 276.9 206 68.4
SGA_v2.0_scaffold170G38821 Striga asiatica HOM05D005638 ORTHO05D006913 6.5e-72 275.4 227 63.0
Hma1.2p1_0882F.1_g232170 Hydrangea macrophylla HOM05D005638 ORTHO05D006913 3.2e-71 273.1 179 77.7
AagrBONN_evm.TU.Sc2ySwM_344.3309 Anthoceros agrestis HOM05D005638 ORTHO05D006913 8.5e-64 248.4 318 46.5
PSO170G3371 Papaver somniferum HOM05D005638 ORTHO05D006913 2.1e-62 243.8 226 58.0
MD13G1032700 Malus domestica HOM05D005638 ORTHO05D006913 1.8e-58 230.7 166 71.7
Hma1.2p1_0882F.1_g232190 Hydrangea macrophylla HOM05D005638 ORTHO05D006913 1.7e-56 224.2 138 79.0
PRCOL_00001621 Prasinoderma coloniale HOM05D005638 ORTHO05D006913 4.5e-49 199.5 400 34.2
SEGI_20204 Sequoiadendron giganteum HOM05D005638 ORTHO05D006913 2.9e-48 196.8 180 58.9
CDE11G0817 Ceratophyllum demersum HOM05D005638 ORTHO05D006913 3.2e-39 166.8 125 67.2
MD13G1032600 Malus domestica HOM05D005638 ORTHO05D006913 1.0e-37 161.8 116 69.8
Thecc.06G067600 Theobroma cacao HOM05D005638 ORTHO05D006913 9.8e-36 155.2 109 72.5
MCO02G007 Micromonas commoda HOM05D005638 ORTHO05D006913 4.1e-34 149.8 303 32.3
BraA02t08176Z Brassica rapa HOM05D005638 ORTHO05D006913 5.9e-33 146.0 113 69.9
CDE11G0802 Ceratophyllum demersum HOM05D005638 ORTHO05D006913 4.2e-31 139.8 101 66.3
SMO351G0247 Selaginella moellendorffii HOM05D005638 ORTHO05D006913 1.3e-27 128.3 375 28.5
TPR.G15740 Trifolium pratense HOM05D005638 ORTHO05D006913 1.7e-27 127.9 116 59.5
Rhsim11G0032000 Rhododendron simsii HOM05D005638 ORTHO05D006913 1.0e-21 108.6 121 49.6
TPR.G7417 Trifolium pratense HOM05D005638 ORTHO05D006913 5.7e-20 102.8 66 74.2
FAN28G2655 Fragaria x ananassa HOM05D005638 ORTHO05D006913 4.9e-19 99.8 65 70.8
Rhsim09G0101800 Rhododendron simsii HOM05D005638 ORTHO05D006913 5.4e-18 96.3 116 54.3
Cfa022174 Carpinus fangiana HOM05D005638 ORTHO05D006913 1.6e-17 94.7 362 26.2
Rhsim09G0101700 Rhododendron simsii HOM05D005638 ORTHO05D006913 2.9e-16 90.5 68 61.8
SHI16222 Sapria himalayana HOM05D000030 ORTHO05D007344 4.3e-15 86.7 54 79.6
SEGI_29357 Sequoiadendron giganteum HOM05D005638 ORTHO05D006913 4.3e-15 86.7 66 59.1
Cre17.g726500 Chlamydomonas reinhardtii HOM05D005638 ORTHO05D006913 7.3e-15 85.9 226 29.6


User provided reference genes

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