Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc65.52 Carica papaya HOM05D006037 ORTHO05D007384 3.1e-292 1007.7 486 100.0
Ciclev10014910m.g Citrus clementina HOM05D006037 ORTHO05D007384 1.2e-174 617.1 528 57.4
Duzib248G1272 Durio zibethinus HOM05D006037 ORTHO05D007384 3.4e-174 615.5 516 57.4
CiPaw.05G240100 Carya illinoinensis HOM05D006037 ORTHO05D007384 3.3e-169 599.0 520 56.2
MD16G1039700 Malus domestica HOM05D006037 ORTHO05D007384 4.8e-168 595.1 539 54.5
Potri.010G122100 Populus trichocarpa HOM05D006037 ORTHO05D007384 4.8e-168 595.1 516 56.4
FvH4_4g26975 Fragaria vesca HOM05D006037 ORTHO05D007384 2.4e-167 592.8 515 55.0
Sabra10G0092200 Salix brachista HOM05D006037 ORTHO05D007384 5.3e-167 591.7 527 56.2
TAR622G1007 Trochodendron aralioides HOM05D006037 ORTHO05D007384 9.0e-167 590.9 527 55.4
Gorai.005G192200 Gossypium raimondii HOM05D006037 ORTHO05D007384 1.2e-166 590.5 521 55.5
CSS0045711 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 9.3e-164 580.9 525 54.7
Thecc.02G224800 Theobroma cacao HOM05D006037 ORTHO05D007384 1.6e-163 580.1 471 59.2
FAN12G3404 Fragaria x ananassa HOM05D006037 ORTHO05D007384 4.6e-163 578.6 532 52.8
CSS0026176 Camellia sinensis var. sinensis HOM05D006037 ORTHO05D007384 1.8e-162 576.6 525 54.5
Rhsim09G0105100 Rhododendron simsii HOM05D006037 ORTHO05D007384 1.8e-162 576.6 515 55.5
THA.LOC104821921 Tarenaya hassleriana HOM05D006037 ORTHO05D007384 5.1e-162 575.1 522 56.1
CANSAT01G2894 Cannabis sativa HOM05D006037 ORTHO05D007384 1.5e-161 573.5 514 55.6
Prupe.1G314400 Prunus persica HOM05D006037 ORTHO05D007384 1.9e-161 573.2 465 58.5
FAN22G1751 Fragaria x ananassa HOM05D006037 ORTHO05D007384 3.7e-160 568.9 560 50.5
RcHm_v2.0_Chr4g0434781 Rosa chinensis HOM05D006037 ORTHO05D007384 1.4e-159 567.0 465 57.4
PSO017G5347 Papaver somniferum HOM05D006037 ORTHO05D007384 3.1e-159 565.8 525 53.7
Atru.chr11.165 Acer truncatum HOM05D006037 ORTHO05D007384 1.5e-158 563.5 468 58.3
Thhalv10007371m.g Eutrema salsugineum HOM05D006037 ORTHO05D007384 2.0e-158 563.1 521 54.3
Manes.14G105200 Manihot esculenta HOM05D006037 ORTHO05D007384 2.0e-158 563.1 471 57.5
GSVIVG01011862001 Vitis vinifera HOM05D006037 ORTHO05D007384 1.4e-156 557.0 471 56.7
COL.COLO4_38215 Corchorus olitorius HOM05D006037 ORTHO05D007384 1.9e-156 556.6 464 58.0
Gohir.D02G171000 Gossypium hirsutum HOM05D006037 ORTHO05D007384 3.2e-156 555.8 471 56.9
Sabra10G0092100 Salix brachista HOM05D006037 ORTHO05D007384 4.2e-156 555.4 465 57.8
Aqoxy3G00235 Aquilegia oxysepala HOM05D006037 ORTHO05D007384 7.2e-156 554.7 523 52.6
MD13G1039000 Malus domestica HOM05D006037 ORTHO05D007384 7.2e-156 554.7 458 57.6
arahy.Tifrunner.gnm1.ann1.NA36PT Arachis hypogaea HOM05D006037 ORTHO05D007384 2.7e-155 552.7 523 52.2
Gohir.A03G147800 Gossypium hirsutum HOM05D006037 ORTHO05D007384 3.6e-155 552.4 471 57.1
Actinidia14911 Actinidia chinensis HOM05D006037 ORTHO05D007384 6.1e-155 551.6 511 54.4
Potri.010G122000 Populus trichocarpa HOM05D006037 ORTHO05D007384 6.1e-155 551.6 472 58.3
Haze_00627 Corylus avellana HOM05D006037 ORTHO05D007384 7.9e-155 551.2 525 53.0
PSO478G0980 Papaver somniferum HOM05D006037 ORTHO05D007384 7.9e-155 551.2 525 52.4
DCAR_007255 Daucus carota HOM05D006037 ORTHO05D007384 1.0e-154 550.8 517 52.6
arahy.Tifrunner.gnm1.ann1.CBB0MY Arachis hypogaea HOM05D006037 ORTHO05D007384 2.3e-154 549.7 523 52.2
Carub.0001s2514 Capsella rubella HOM05D006037 ORTHO05D007384 9.7e-153 544.3 516 53.9
Nn3g17908 Nelumbo nucifera HOM05D006037 ORTHO05D007384 8.2e-152 541.2 523 50.9
AL1G39950 Arabidopsis lyrata HOM05D006037 ORTHO05D007384 1.8e-151 540.0 521 52.6
PGR102G0142 Punica granatum HOM05D006037 ORTHO05D007384 4.1e-151 538.9 523 51.6
Lalb_Chr06g0165941 Lupinus albus HOM05D006037 ORTHO05D007384 6.9e-151 538.1 478 54.0
Psat6g225720 Pisum sativum HOM05D006037 ORTHO05D007384 9.1e-151 537.7 476 53.8
Medtr1g110300 Medicago truncatula HOM05D006037 ORTHO05D007384 1.2e-150 537.3 516 51.0
Cc11_g09830 Coffea canephora HOM05D006037 ORTHO05D007384 2.0e-150 536.6 522 51.1
TWI31G0909 Tripterygium wilfordii HOM05D006037 ORTHO05D007384 2.9e-149 532.7 472 56.1
Aa31LG7G9120 Aethionema arabicum HOM05D006037 ORTHO05D007384 6.5e-149 531.6 516 52.5
BolC5t31246H Brassica oleracea HOM05D006037 ORTHO05D007384 1.1e-148 530.8 521 51.4
vmacro10580 Vaccinium macrocarpon HOM05D006037 ORTHO05D007384 1.4e-148 530.4 600 47.8
Eucgr.B02995 Eucalyptus grandis HOM05D006037 ORTHO05D007384 1.9e-148 530.0 473 55.2
C05p25140 Brassica napus HOM05D006037 ORTHO05D007384 3.2e-148 529.3 521 51.4
BcaC05g26674 Brassica carinata HOM05D006037 ORTHO05D007384 4.2e-148 528.9 521 51.6
Sopen05g004860 Solanum pennellii HOM05D006037 ORTHO05D007384 1.4e-146 523.9 504 50.2
A09p39240 Brassica napus HOM05D006037 ORTHO05D007384 8.8e-146 521.2 521 50.9
BraA09t39423Z Brassica rapa HOM05D006037 ORTHO05D007384 8.8e-146 521.2 521 50.9
Glyma.20G118000 Glycine max HOM05D006037 ORTHO05D007384 1.1e-145 520.8 479 52.8
AT1G25375 Arabidopsis thaliana HOM05D006037 ORTHO05D007384 3.3e-145 519.2 521 50.7
MBI09_g07743_MAGBIO Magnolia biondii HOM05D006037 ORTHO05D007384 1.3e-144 517.3 523 50.3
Lj3C1012T17 Lonicera japonica HOM05D006037 ORTHO05D007384 2.2e-144 516.5 484 54.5
Lsat_1_v5_gn_3_57741 Lactuca sativa HOM05D006037 ORTHO05D007384 8.2e-144 514.6 493 49.1
Lj5g0002773 Lotus japonicus HOM05D006037 ORTHO05D007384 8.2e-144 514.6 474 52.1
Phvul.007G029700 Phaseolus vulgaris HOM05D006037 ORTHO05D007384 1.1e-143 514.2 477 51.4
TPR.G4859 Trifolium pratense HOM05D006037 ORTHO05D007384 1.4e-143 513.8 473 52.4
SalBow8G2496 Salvia bowleyana HOM05D006037 ORTHO05D007384 1.8e-143 513.5 516 50.0
SalBow8G4457 Salvia bowleyana HOM05D006037 ORTHO05D007384 2.4e-143 513.1 516 50.0
CAN.G610.57 Capsicum annuum HOM05D006037 ORTHO05D007384 5.3e-143 511.9 513 49.1
VMungo0720G2449 Vigna mungo HOM05D006037 ORTHO05D007384 4.5e-142 508.8 470 51.9
ECA246G3707 Erigeron canadensis HOM05D006037 ORTHO05D007384 1.3e-141 507.3 530 46.4
Nitab4.5_0005528g0030 Nicotiana tabacum HOM05D006037 ORTHO05D007384 1.1e-140 504.2 559 46.3
Nitab4.5_0001616g0090 Nicotiana tabacum HOM05D006037 ORTHO05D007384 3.2e-140 502.7 560 45.5
EL10Ac6g14338 Beta vulgaris HOM05D006037 ORTHO05D007384 2.7e-139 499.6 490 49.8
Aa31LG7G9130 Aethionema arabicum HOM05D006037 ORTHO05D007384 1.0e-138 497.7 494 50.4
Solyc05g009140.3 Solanum lycopersicum HOM05D006037 ORTHO05D007384 1.8e-138 496.9 474 50.2
BcaC05g26470 Brassica carinata HOM05D006037 ORTHO05D007384 3.9e-138 495.7 511 49.9
HanXRQChr17g0551931 Helianthus annuus HOM05D006037 ORTHO05D007384 2.0e-137 493.4 477 49.1
TAR622G1402 Trochodendron aralioides HOM05D006037 ORTHO05D007384 6.3e-136 488.4 426 54.7
SGA_v2.0_scaffold38G14964 Striga asiatica HOM05D006037 ORTHO05D000229 7.0e-135 485.0 505 47.7
MSTRG.7652 Avicennia marina HOM05D006037 ORTHO05D007384 1.3e-133 480.7 465 50.8
Ca_11141_v3 Cicer arietinum L. HOM05D006037 ORTHO05D007384 2.9e-133 479.6 492 49.6
Ca_11146_v3 Cicer arietinum L. HOM05D006037 ORTHO05D007384 2.9e-133 479.6 492 49.6
Peaxi162Scf00753g00122 Petunia axillaris HOM05D006037 ORTHO05D007384 2.9e-133 479.6 461 51.0
AUR62002838 Chenopodium quinoa HOM05D006037 ORTHO05D007384 1.0e-130 471.1 466 50.6
AUR62037303 Chenopodium quinoa HOM05D006037 ORTHO05D007384 8.8e-130 468.0 468 51.3
AUR62037301 Chenopodium quinoa HOM05D006037 ORTHO05D007384 8.2e-128 461.5 630 41.0
AUR62002836 Chenopodium quinoa HOM05D006037 ORTHO05D007384 1.1e-127 461.1 513 48.0
Zm00001eb125200 Zea mays HOM05D006037 ORTHO05D007384 2.4e-127 459.9 512 45.9
ATR1125G090 Amborella trichopoda HOM05D006037 ORTHO05D007384 1.7e-125 453.8 474 48.1
Migut.L01043 Erythranthe guttata HOM05D006037 ORTHO05D007384 2.1e-123 446.8 469 48.6
unitig_747.g21203 Utricularia gibba HOM05D006037 ORTHO05D007384 1.0e-122 444.5 522 44.4
CDE12G0065 Ceratophyllum demersum HOM05D006037 ORTHO05D007384 5.4e-119 432.2 510 43.3
Os01g0133500 Oryza sativa ssp. japonica HOM05D006037 ORTHO05D007384 2.7e-118 429.9 497 43.5
Dinv21054 Davidia involucrata HOM05D006037 ORTHO05D007384 1.2e-113 414.5 332 58.4
Sc11g0003550 Simmondsia chinensis HOM05D006037 ORTHO05D007384 9.2e-111 404.8 375 54.1
QL01p040434 Quercus lobata HOM05D006037 ORTHO05D007384 3.6e-107 392.9 297 60.9
FAN07G1837 Fragaria x ananassa HOM05D006037 ORTHO05D007384 1.6e-102 377.5 289 58.8
CARHR026110 Cardamine hirsuta HOM05D006037 ORTHO05D007384 1.4e-98 364.4 349 53.6
PGSC0003DMG401014554 Solanum tuberosum HOM05D006037 ORTHO05D007384 1.3e-96 357.8 346 48.8
Ah.02g127690 Amaranthus hybridus HOM05D006037 ORTHO05D007384 3.4e-89 333.2 484 38.0
Mapoly0042s0034 Marchantia polymorpha HOM05D006037 ORTHO05D007384 1.2e-83 314.7 498 35.9
RcHm_v2.0_Chr5g0042931 Rosa chinensis HOM05D006037 ORTHO05D007384 3.5e-78 296.6 260 58.5
RcHm_v2.0_Chr7g0243441 Rosa chinensis HOM05D006037 ORTHO05D007384 7.8e-78 295.4 260 58.5
AagrBONN_evm.TU.Sc2ySwM_117.146 Anthoceros agrestis HOM05D006037 ORTHO05D007384 1.1e-74 285.0 542 34.3
BcaC05g26471 Brassica carinata HOM05D006037 ORTHO05D007384 6.9e-74 282.3 246 57.7
Pp3c15_25940 Physcomitrium patens HOM05D006037 ORTHO05D007384 2.2e-72 277.3 511 32.7
RcHm_v2.0_Chr6g0261541 Rosa chinensis HOM05D006037 ORTHO05D007384 8.4e-72 275.4 238 58.8
QL02p008150 Quercus lobata HOM05D006037 ORTHO05D007384 8.1e-59 232.3 201 53.2
SMO164G0020 Selaginella moellendorffii HOM05D006037 ORTHO05D007384 1.1e-58 231.9 298 40.9
HPP92_008271 Vanilla planifolia HOM05D006037 ORTHO05D007384 3.2e-55 220.3 219 48.9
QL01p040421 Quercus lobata HOM05D006037 ORTHO05D007384 8.7e-53 212.2 242 50.0
QL02p008285 Quercus lobata HOM05D000178 ORTHO05D007384 7.2e-39 166.0 183 50.3
CBR_g162 Chara braunii HOM05D006037 ORTHO05D007384 1.0e-37 162.2 354 29.7
Hma1.2p1_1024F.1_g249220 Hydrangea macrophylla HOM05D006037 ORTHO05D007384 6.3e-35 152.9 85 83.5
Hma1.2p1_1024F.1_g249230 Hydrangea macrophylla HOM05D006037 ORTHO05D007384 3.2e-31 140.6 346 30.1
Oeu054976.1 Olea europaea HOM05D006037 ORTHO05D007384 1.7e-27 128.3 81 70.4
QL02p008246 Quercus lobata HOM05D006037 ORTHO05D007384 2.0e-25 121.3 92 59.8
HPP92_008272 Vanilla planifolia HOM05D006037 ORTHO05D007384 4.8e-19 100.1 100 52.0
SEGI_35277 Sequoiadendron giganteum HOM05D006037 ORTHO05D007384 3.5e-17 94.0 93 47.3
SEGI_36031 Sequoiadendron giganteum HOM05D006037 ORTHO05D007384 7.7e-17 92.8 118 39.0
RcHm_v2.0_Chr2g0108931 Rosa chinensis HOM05D006037 ORTHO05D007384 2.2e-16 91.3 77 57.1
SEGI_25624 Sequoiadendron giganteum HOM05D006037 ORTHO05D007384 1.3e-11 75.5 132 31.8
Lsat_1_v5_gn_7_98681 Lactuca sativa HOM05D006037 ORTHO05D007384 4.8e-11 73.6 76 47.4
ECA247G1102 Erigeron canadensis HOM05D003337 ORTHO05D003808 2.1e-06 58.2 54 55.6


User provided reference genes

Program Settings