Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc65.32 Carica papaya HOM05D007861 ORTHO05D007271 2.3e-51 205.3 106 100.0
Gohir.D05G106401 Gossypium hirsutum HOM05D007861 ORTHO05D007271 3.9e-22 108.2 80 71.2
Gorai.009G110500 Gossypium raimondii HOM05D007861 ORTHO05D007271 3.9e-22 108.2 80 71.2
Gohir.A05G106400 Gossypium hirsutum HOM05D007861 ORTHO05D007271 1.6e-20 102.8 80 68.8
Thecc.09G347700 Theobroma cacao HOM05D007861 ORTHO05D007271 2.3e-19 99.0 92 60.9
COL.COLO4_34705 Corchorus olitorius HOM05D007861 ORTHO05D007271 5.2e-19 97.8 95 58.9
Gohir.A08G200000 Gossypium hirsutum HOM05D007861 ORTHO05D007271 8.3e-17 90.5 95 57.9
Gorai.004G230800 Gossypium raimondii HOM05D007861 ORTHO05D007271 1.9e-16 89.4 81 63.0
Gohir.D08G217100 Gossypium hirsutum HOM05D007861 ORTHO05D007271 7.1e-16 87.4 95 56.8
Atru.chr3.3557 Acer truncatum HOM05D007861 ORTHO05D007271 2.1e-15 85.9 94 56.4
Ciclev10029681m.g Citrus clementina HOM05D007861 ORTHO05D007271 1.3e-14 83.2 86 57.0
Manes.11G150200 Manihot esculenta HOM05D007861 ORTHO05D007271 3.0e-14 82.0 97 52.6
MSTRG.21100 Avicennia marina HOM05D007861 ORTHO05D007271 2.1e-12 75.9 86 53.5
Potri.004G213900 Populus trichocarpa HOM05D007861 ORTHO05D007271 2.8e-12 75.5 88 53.4
VMungo1127G1395 Vigna mungo HOM05D007861 ORTHO05D007271 4.7e-12 74.7 91 51.6
Haze_23757 Corylus avellana HOM05D007861 ORTHO05D007271 6.2e-12 74.3 81 54.3
Cfa010349 Carpinus fangiana HOM05D007861 ORTHO05D007271 8.1e-12 73.9 79 55.7
CiPaw.13G118000 Carya illinoinensis HOM05D007861 ORTHO05D007271 8.1e-12 73.9 93 51.6
Lj3g0021425 Lotus japonicus HOM05D007861 ORTHO05D007271 8.1e-12 73.9 102 51.0
TAR633G0087 Trochodendron aralioides HOM05D007861 ORTHO05D007271 8.1e-12 73.9 90 50.0
Migut.N02575 Erythranthe guttata HOM05D007861 ORTHO05D007271 3.1e-11 72.0 72 52.8
Potri.009G008300 Populus trichocarpa HOM05D007861 ORTHO05D007271 6.8e-11 70.9 104 50.0
Thhalv10017662m.g Eutrema salsugineum HOM05D014739 ORTHO05D007271 1.2e-10 70.1 90 52.2
Phvul.011G083700 Phaseolus vulgaris HOM05D007861 ORTHO05D007271 1.5e-10 69.7 90 47.8
MELO3C026916.2 Cucumis melo HOM05D007861 ORTHO05D007271 2.6e-10 68.9 96 46.9
Lj3g0027314 Lotus japonicus HOM05D007861 ORTHO05D007271 3.4e-10 68.6 90 46.7
Sabra09G0004800 Salix brachista HOM05D007861 ORTHO05D007271 3.4e-10 68.6 87 52.9
arahy.Tifrunner.gnm1.ann1.ALS1H8 Arachis hypogaea HOM05D007861 ORTHO05D007271 7.6e-10 67.4 100 47.0
Phvul.005G132100 Phaseolus vulgaris HOM05D007861 ORTHO05D007271 7.6e-10 67.4 90 47.8
Glyma.11G195000 Glycine max HOM05D007861 ORTHO05D007271 9.9e-10 67.0 90 44.4
Prupe.6G107700 Prunus persica HOM05D007861 ORTHO05D007271 9.9e-10 67.0 101 45.5
Manes.04G015900 Manihot esculenta HOM05D007861 ORTHO05D007271 1.3e-09 66.6 101 48.5
Sed0017526 Sechium edule HOM05D007861 ORTHO05D007271 1.3e-09 66.6 107 44.9
Lalb_Chr01g0004491 Lupinus albus HOM05D007861 ORTHO05D007271 1.7e-09 66.2 90 42.2
Nn2g11569 Nelumbo nucifera HOM05D007861 ORTHO05D007271 1.7e-09 66.2 89 46.1
Lalb_Chr14g0374511 Lupinus albus HOM05D007861 ORTHO05D007271 2.2e-09 65.9 96 45.8
Sabra04G0145100 Salix brachista HOM05D007861 ORTHO05D007271 2.2e-09 65.9 70 61.4
Glyma.12G079100 Glycine max HOM05D007861 ORTHO05D007271 2.9e-09 65.5 99 47.5
Nn2g13767 Nelumbo nucifera HOM05D007861 ORTHO05D007271 2.9e-09 65.5 93 44.1
CsaV3_6G014180 Cucumis sativus L. HOM05D007861 ORTHO05D007271 3.8e-09 65.1 108 44.4
FAN21G2212 Fragaria x ananassa HOM05D007861 ORTHO05D007271 3.8e-09 65.1 89 49.4
Sed0005749 Sechium edule HOM05D007861 ORTHO05D007271 3.8e-09 65.1 96 46.9
Glyma.13G323700 Glycine max HOM05D007861 ORTHO05D007271 4.9e-09 64.7 91 48.4
Lalb_Chr24g0394821 Lupinus albus HOM05D007861 ORTHO05D007271 4.9e-09 64.7 96 46.9
Medtr2g095310 Medicago truncatula HOM05D007861 ORTHO05D007271 4.9e-09 64.7 101 46.5
BraA04t17695Z Brassica rapa HOM05D014739 ORTHO05D007271 6.4e-09 64.3 94 46.8
Cfa001682 Carpinus fangiana HOM05D009695 ORTHO05D007271 6.4e-09 64.3 101 38.6
FAN16G3504 Fragaria x ananassa HOM05D007861 ORTHO05D007271 1.1e-08 63.5 89 49.4
Carub.0004s0882 Capsella rubella HOM05D014739 ORTHO05D007271 1.4e-08 63.2 94 45.7
CiPaw.14G086500 Carya illinoinensis HOM05D007861 ORTHO05D007271 1.4e-08 63.2 90 47.8
Sp4g10850 Schrenkiella parvula HOM05D014739 ORTHO05D007271 1.4e-08 63.2 76 55.3
C04p57110 Brassica napus HOM05D014739 ORTHO05D007271 1.9e-08 62.8 94 45.7
CARHR120770 Cardamine hirsuta HOM05D014739 ORTHO05D007271 1.9e-08 62.8 92 46.7
ClCG02G021400 Citrullus lanatus HOM05D007861 ORTHO05D007271 1.9e-08 62.8 76 51.3
TPR.G11489 Trifolium pratense HOM05D007861 ORTHO05D007271 1.9e-08 62.8 101 45.5
BcaC02g08213 Brassica carinata HOM05D014739 ORTHO05D007271 3.2e-08 62.0 94 45.7
A04p21280 Brassica napus HOM05D014739 ORTHO05D007271 3.2e-08 62.0 94 45.7
BolC4t27246H Brassica oleracea HOM05D014739 ORTHO05D007271 3.2e-08 62.0 94 45.7
Lalb_Chr03g0027611 Lupinus albus HOM05D007861 ORTHO05D007271 3.2e-08 62.0 89 44.9
RcHm_v2.0_Chr5g0057831 Rosa chinensis HOM05D007861 ORTHO05D007271 3.2e-08 62.0 99 46.5
Glyma.12G177000 Glycine max HOM05D007861 ORTHO05D007271 4.1e-08 61.6 91 47.3
BcaB06g28183 Brassica carinata HOM05D014739 ORTHO05D007271 5.4e-08 61.2 94 44.7
Potri.008G036000 Populus trichocarpa HOM05D007861 ORTHO05D007271 5.4e-08 61.2 106 38.7
CSS0012629 Camellia sinensis var. sinensis HOM05D007861 ORTHO05D007271 7.1e-08 60.8 104 39.4
Sopen06g031390 Solanum pennellii HOM05D039995 ORTHO05D007271 7.1e-08 60.8 64 51.6
PGSC0003DMG400019683 Solanum tuberosum HOM05D007861 ORTHO05D007271 7.1e-08 60.8 49 59.2
FvH4_3g31180 Fragaria vesca HOM05D007861 ORTHO05D007271 9.2e-08 60.5 99 45.5
FAN11G3777 Fragaria x ananassa HOM05D007861 ORTHO05D007271 9.2e-08 60.5 99 45.5
FAN25G1997 Fragaria x ananassa HOM05D007861 ORTHO05D007271 9.2e-08 60.5 99 45.5
Medtr1g094250 Medicago truncatula HOM05D007861 ORTHO05D007271 1.2e-07 60.1 104 36.5
Haze_16853 Corylus avellana HOM05D009695 ORTHO05D007271 2.1e-07 59.3 89 41.6
CiPaw.02G172600 Carya illinoinensis HOM05D019773 ORTHO05D007271 2.7e-07 58.9 101 40.6
Migut.D02257 Erythranthe guttata HOM05D007861 ORTHO05D007271 3.5e-07 58.5 96 39.6
Psat6g181720 Pisum sativum HOM05D007861 ORTHO05D007271 3.5e-07 58.5 67 46.3
Eucgr.G02861 Eucalyptus grandis HOM05D007861 ORTHO05D007271 4.6e-07 58.2 67 49.3
Eucgr.J00896 Eucalyptus grandis HOM05D007861 ORTHO05D007271 4.6e-07 58.2 67 52.2
Medtr4g057830 Medicago truncatula HOM05D007861 ORTHO05D007271 7.8e-07 57.4 65 50.8
CiPaw.01G269700 Carya illinoinensis HOM05D007861 ORTHO05D007271 1.3e-06 56.6 101 39.6
DCAR_018786 Daucus carota HOM05D007861 ORTHO05D007271 1.7e-06 56.2 66 53.0
Gohir.A05G294400 Gossypium hirsutum HOM05D009695 ORTHO05D007271 2.3e-06 55.8 105 38.1
Aqoxy1G01166 Aquilegia oxysepala HOM05D007861 ORTHO05D007271 5.1e-06 54.7 100 39.0
Manes.07G095300 Manihot esculenta HOM05D009695 ORTHO05D007271 5.1e-06 54.7 99 37.4
Solyc11g069730.1 Solanum lycopersicum HOM05D007861 ORTHO05D007271 5.1e-06 54.7 104 40.4
TPR.G6167 Trifolium pratense HOM05D007861 ORTHO05D007271 5.1e-06 54.7 97 42.3
Hma1.2p1_0569F.1_g180260 Hydrangea macrophylla HOM05D007861 ORTHO05D007271 6.6e-06 54.3 51 54.9
Potri.010G226200 Populus trichocarpa HOM05D007861 ORTHO05D007271 6.6e-06 54.3 90 38.9


User provided reference genes

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