Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc65.31 Carica papaya HOM05D007330 ORTHO05D009368 4.0e-76 288.1 154 100.0
Ciclev10029423m.g Citrus clementina HOM05D007330 ORTHO05D009368 1.7e-31 139.8 95 75.8
Sabra09G0004900 Salix brachista HOM05D007330 ORTHO05D009368 3.0e-31 139.0 127 59.8
PGR119G1592 Punica granatum HOM05D007330 ORTHO05D009368 3.9e-31 138.7 95 73.7
Gorai.009G110400 Gossypium raimondii HOM05D007330 ORTHO05D009368 5.1e-31 138.3 100 72.0
Gohir.D05G106300 Gossypium hirsutum HOM05D007330 ORTHO05D009368 8.6e-31 137.5 94 77.7
Gohir.A05G106300 Gossypium hirsutum HOM05D007330 ORTHO05D009368 1.5e-30 136.7 94 76.6
CiPaw.13G117900 Carya illinoinensis HOM05D007330 ORTHO05D009368 1.9e-30 136.3 96 76.0
ClCG03G002650 Citrullus lanatus HOM05D007330 ORTHO05D009368 5.6e-30 134.8 86 80.2
Thecc.09G347600 Theobroma cacao HOM05D007330 ORTHO05D009368 5.6e-30 134.8 94 75.5
CSS0040476 Camellia sinensis var. sinensis HOM05D007330 ORTHO05D009368 7.3e-30 134.4 94 74.5
Prupe.6G107600 Prunus persica HOM05D007330 ORTHO05D009368 1.6e-29 133.3 115 62.6
Manes.11G150100 Manihot esculenta HOM05D007330 ORTHO05D009368 3.6e-29 132.1 95 71.6
vmacro03274 Vaccinium macrocarpon HOM05D007330 ORTHO05D009368 4.7e-29 131.7 94 73.4
Dinv34698 Davidia involucrata HOM05D007330 ORTHO05D009368 1.4e-28 130.2 91 73.6
MELO3C004968.2 Cucumis melo HOM05D007330 ORTHO05D009368 1.8e-28 129.8 86 77.9
CsaV3_1G013380 Cucumis sativus L. HOM05D007330 ORTHO05D009368 1.8e-28 129.8 86 77.9
FvH4_3g31190 Fragaria vesca HOM05D007330 ORTHO05D009368 1.8e-28 129.8 95 71.6
FAN11G3216 Fragaria x ananassa HOM05D007330 ORTHO05D009368 1.8e-28 129.8 95 71.6
Rhsim13G0098500 Rhododendron simsii HOM05D007330 ORTHO05D009368 1.8e-28 129.8 94 72.3
CANSAT35G1795 Cannabis sativa HOM05D007330 ORTHO05D009368 2.4e-28 129.4 110 68.2
RcHm_v2.0_Chr5g0057841 Rosa chinensis HOM05D007330 ORTHO05D009368 3.1e-28 129.0 95 71.6
COL.COLO4_34706 Corchorus olitorius HOM05D007330 ORTHO05D009368 4.0e-28 128.6 98 69.4
FAN25G0306 Fragaria x ananassa HOM05D007330 ORTHO05D009368 5.2e-28 128.3 95 70.5
Glyma.11G195100 Glycine max HOM05D007330 ORTHO05D009368 5.2e-28 128.3 95 69.5
Potri.009G008400 Populus trichocarpa HOM05D007330 ORTHO05D009368 5.2e-28 128.3 95 71.6
PGSC0003DMG400005973 Solanum tuberosum HOM05D007330 ORTHO05D009368 5.2e-28 128.3 130 54.6
Glyma.12G079000 Glycine max HOM05D007330 ORTHO05D009368 8.9e-28 127.5 95 69.5
TAR636G1893 Trochodendron aralioides HOM05D007330 ORTHO05D009368 8.9e-28 127.5 113 64.6
Sopen04g002470 Solanum pennellii HOM05D007330 ORTHO05D009368 1.2e-27 127.1 113 59.3
Atru.chr3.3558 Acer truncatum HOM05D007330 ORTHO05D009368 1.5e-27 126.7 95 68.4
Lj1C194T4 Lonicera japonica HOM05D007330 ORTHO05D009368 1.5e-27 126.7 124 56.5
FAN21G2017 Fragaria x ananassa HOM05D007330 ORTHO05D009368 2.0e-27 126.3 95 68.4
Eucgr.J00897 Eucalyptus grandis HOM05D007330 ORTHO05D009368 3.4e-27 125.6 94 68.1
QL01p015978 Quercus lobata HOM05D007330 ORTHO05D009368 3.4e-27 125.6 96 70.8
Nn2g13766 Nelumbo nucifera HOM05D007330 ORTHO05D009368 7.6e-27 124.4 85 76.5
Solyc04g007410.4 Solanum lycopersicum HOM05D007330 ORTHO05D009368 7.6e-27 124.4 113 58.4
Lj3g0015691 Lotus japonicus HOM05D007330 ORTHO05D009368 1.7e-26 123.2 95 68.4
Sed0025524 Sechium edule HOM05D007330 ORTHO05D009368 1.7e-26 123.2 95 70.5
THA.LOC104814822 Tarenaya hassleriana HOM05D007330 ORTHO05D009368 1.7e-26 123.2 101 67.3
Nitab4.5_0000567g0040 Nicotiana tabacum HOM05D007330 ORTHO05D009368 8.4e-26 120.9 89 69.7
MSTRG.18683 Avicennia marina HOM05D007330 ORTHO05D009368 1.1e-25 120.6 98 63.3
Cc01_g10610 Coffea canephora HOM05D007330 ORTHO05D009368 1.4e-25 120.2 85 72.9
HanXRQChr11g0346411 Helianthus annuus HOM05D007330 ORTHO05D009368 1.4e-25 120.2 117 57.3
Nitab4.5_0003325g0010 Nicotiana tabacum HOM05D007330 ORTHO05D009368 1.4e-25 120.2 90 68.9
Actinidia07167 Actinidia chinensis HOM05D007330 ORTHO05D009368 3.2e-25 119.0 94 72.3
BcaB05g23421 Brassica carinata HOM05D007330 ORTHO05D009368 3.2e-25 119.0 99 67.7
Lsat_1_v5_gn_1_63180 Lactuca sativa HOM05D007330 ORTHO05D009368 5.4e-25 118.2 102 60.8
MD11G1142300 Malus domestica HOM05D007330 ORTHO05D009368 5.4e-25 118.2 113 60.2
Aa31LG4G14100 Aethionema arabicum HOM05D007330 ORTHO05D009368 7.1e-25 117.9 95 69.5
BcaC09g49699 Brassica carinata HOM05D007330 ORTHO05D009368 7.1e-25 117.9 99 66.7
A01p26570 Brassica napus HOM05D007330 ORTHO05D009368 7.1e-25 117.9 99 66.7
C01p33810 Brassica napus HOM05D007330 ORTHO05D009368 7.1e-25 117.9 99 66.7
BolC1t03342H Brassica oleracea HOM05D007330 ORTHO05D009368 7.1e-25 117.9 99 66.7
BraA01t02587Z Brassica rapa HOM05D007330 ORTHO05D009368 7.1e-25 117.9 99 66.7
Ca_19301_v3 Cicer arietinum L. HOM05D007330 ORTHO05D009368 9.3e-25 117.5 105 61.9
CAN.G1577.6 Capsicum annuum HOM05D007330 ORTHO05D009368 1.2e-24 117.1 103 62.1
Hma1.2p1_0569F.1_g180250 Hydrangea macrophylla HOM05D007330 ORTHO05D009368 1.2e-24 117.1 93 67.7
TWI31G1101 Tripterygium wilfordii HOM05D007330 ORTHO05D009368 1.2e-24 117.1 86 70.9
ECA248G2053 Erigeron canadensis HOM05D007330 ORTHO05D009368 1.6e-24 116.7 102 60.8
Hund08155 Selenicereus undatus HOM05D007330 ORTHO05D009368 1.6e-24 116.7 129 51.2
DCAR_018785 Daucus carota HOM05D007330 ORTHO05D009368 2.1e-24 116.3 86 72.1
Peaxi162Scf00064g00193 Petunia axillaris HOM05D007330 ORTHO05D009368 2.1e-24 116.3 90 66.7
Migut.N02576 Erythranthe guttata HOM05D007330 ORTHO05D009368 2.7e-24 115.9 86 67.4
VMungo1127G0312 Vigna mungo HOM05D007330 ORTHO05D009368 2.7e-24 115.9 92 64.1
Ah.01g003130 Amaranthus hybridus HOM05D007330 ORTHO05D009368 4.6e-24 115.2 94 63.8
Lalb_Chr19g0137021 Lupinus albus HOM05D007330 ORTHO05D009368 4.6e-24 115.2 96 65.6
Thhalv10002688m.g Eutrema salsugineum HOM05D007330 ORTHO05D009368 6.0e-24 114.8 86 72.1
Peaxi162Scf00597g00033 Petunia axillaris HOM05D007330 ORTHO05D009368 6.0e-24 114.8 86 68.6
SGA_v2.0_scaffold116G32214 Striga asiatica HOM05D007330 ORTHO05D009368 6.0e-24 114.8 75 77.3
Aqoxy2G01788 Aquilegia oxysepala HOM05D007330 ORTHO05D009368 7.8e-24 114.4 99 63.6
Peaxi162Scf00958g00023 Petunia axillaris HOM05D007330 ORTHO05D009368 7.8e-24 114.4 90 66.7
GSVIVG01031517001 Vitis vinifera HOM05D000070 ORTHO05D001255 7.8e-24 114.4 95 64.2
Sp5g16210 Schrenkiella parvula HOM05D007330 ORTHO05D009368 1.0e-23 114.0 121 57.0
Haze_23760 Corylus avellana HOM05D007330 ORTHO05D009368 3.0e-23 112.5 213 39.9
CARHR150920 Cardamine hirsuta HOM05D007330 ORTHO05D009368 3.9e-23 112.1 93 63.4
AT3G45050 Arabidopsis thaliana HOM05D007330 ORTHO05D009368 1.5e-22 110.2 109 59.6
Medtr4g057845 Medicago truncatula HOM05D007330 ORTHO05D009368 4.3e-22 108.6 105 56.2
Sc15g0001620 Simmondsia chinensis HOM05D007330 ORTHO05D009368 5.6e-22 108.2 93 59.1
arahy.Tifrunner.gnm1.ann1.PP0PHB Arachis hypogaea HOM05D007330 ORTHO05D009368 9.6e-22 107.5 98 62.2
arahy.Tifrunner.gnm1.ann1.V5GM9G Arachis hypogaea HOM05D007330 ORTHO05D009368 9.6e-22 107.5 98 62.2
Carub.0005s1083 Capsella rubella HOM05D007330 ORTHO05D009368 9.6e-22 107.5 94 66.0
CDE09G0261 Ceratophyllum demersum HOM05D007330 ORTHO05D008128 1.6e-21 106.7 95 60.0
MBI18_g25263_MAGBIO Magnolia biondii HOM05D007330 ORTHO05D009368 6.2e-21 104.8 124 50.0
PSO339G1528 Papaver somniferum HOM05D007330 ORTHO05D009368 1.4e-20 103.6 88 63.6
Psat4g155560 Pisum sativum HOM05D007330 ORTHO05D009368 1.8e-20 103.2 97 58.8
AUR62022766 Chenopodium quinoa HOM05D007330 ORTHO05D009368 3.8e-18 95.5 94 55.3
Phvul.011G083600 Phaseolus vulgaris HOM05D007330 ORTHO05D009368 4.2e-17 92.0 69 65.2
HPP92_007165 Vanilla planifolia HOM05D007330 ORTHO05D009368 2.7e-16 89.4 111 49.5
arahy.Tifrunner.gnm1.ann1.N36MJA Arachis hypogaea HOM05D007330 ORTHO05D009368 1.3e-15 87.0 105 46.7
PSO801G0259 Papaver somniferum HOM05D007330 ORTHO05D009368 1.7e-15 86.7 98 51.0
AL5G23540 Arabidopsis lyrata HOM05D007330 ORTHO05D009368 8.7e-15 84.3 121 47.9
AUR62029217 Chenopodium quinoa HOM05D007330 ORTHO05D009368 1.9e-14 83.2 120 43.3
SEGI_17989 Sequoiadendron giganteum HOM05D007330 ORTHO05D009368 9.6e-14 80.9 88 51.1
Pp3c18_13360 Physcomitrium patens HOM05D007330 ORTHO05D009368 1.6e-13 80.1 79 48.1
Lj1A195G28 Lonicera japonica HOM05D007330 ORTHO05D009368 2.1e-13 79.7 86 53.5
AagrBONN_evm.TU.Sc2ySwM_228.4164 Anthoceros agrestis HOM05D007330 ORTHO05D009368 6.9e-12 74.7 86 52.3
CBR_g54316 Chara braunii HOM05D007330 ORTHO05D009368 1.5e-11 73.6 111 41.4
Os06g0731300 Oryza sativa ssp. japonica HOM05D007330 ORTHO05D009368 1.3e-10 70.5 46 67.4
Actinidia24129 Actinidia chinensis HOM05D000070 ORTHO05D001255 3.9e-07 58.9 84 50.0
Oeu013536.1 Olea europaea HOM05D000070 ORTHO05D001255 1.5e-06 57.0 77 46.8
MD03G1125100 Malus domestica HOM05D007330 ORTHO05D009368 3.3e-06 55.8 30 93.3


User provided reference genes

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