Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc65.119 Carica papaya HOM05D004323 ORTHO05D005140 5.2e-139 498.0 319 100.0
Ciclev10015960m.g Citrus clementina HOM05D004323 ORTHO05D005140 6.0e-95 351.7 286 67.8
Haze_11028 Corylus avellana HOM05D004323 ORTHO05D005140 3.9e-94 349.0 291 67.0
Cfa008584 Carpinus fangiana HOM05D004323 ORTHO05D005140 5.1e-94 348.6 291 66.7
CiPaw.05G248000 Carya illinoinensis HOM05D004323 ORTHO05D005140 5.1e-94 348.6 286 66.4
Atru.chr11.379 Acer truncatum HOM05D004323 ORTHO05D005140 5.3e-91 338.6 321 69.8
Manes.15G126000 Manihot esculenta HOM05D004323 ORTHO05D005140 2.0e-90 336.7 321 68.5
QL01p002128 Quercus lobata HOM05D004323 ORTHO05D005140 3.8e-89 332.4 333 65.2
Potri.010G114900 Populus trichocarpa HOM05D004323 ORTHO05D005140 3.2e-88 329.3 286 64.0
Prupe.1G322700 Prunus persica HOM05D004323 ORTHO05D005140 1.2e-87 327.4 280 65.0
Eucgr.C01716 Eucalyptus grandis HOM05D004323 ORTHO05D005140 5.1e-86 322.0 322 63.0
FAN07G1710 Fragaria x ananassa HOM05D004323 ORTHO05D005140 8.7e-86 321.2 321 65.4
Sabra10G0085000 Salix brachista HOM05D004323 ORTHO05D005140 1.1e-85 320.9 282 64.9
CANSAT01G2279 Cannabis sativa HOM05D004323 ORTHO05D005140 5.7e-85 318.5 296 61.8
FvH4_4g32210 Fragaria vesca HOM05D004323 ORTHO05D005140 1.3e-84 317.4 321 64.8
FAN12G1900 Fragaria x ananassa HOM05D004323 ORTHO05D005140 1.3e-84 317.4 321 64.8
Potri.008G127900 Populus trichocarpa HOM05D004323 ORTHO05D005140 1.3e-84 317.4 282 62.8
arahy.Tifrunner.gnm1.ann1.B1S40C Arachis hypogaea HOM05D004323 ORTHO05D005140 2.8e-84 316.2 291 61.2
arahy.Tifrunner.gnm1.ann1.JPDL6B Arachis hypogaea HOM05D004323 ORTHO05D005140 2.8e-84 316.2 291 61.2
RcHm_v2.0_Chr4g0440951 Rosa chinensis HOM05D004323 ORTHO05D005140 2.8e-84 316.2 283 62.2
FAN17G1549 Fragaria x ananassa HOM05D004323 ORTHO05D005140 3.7e-84 315.8 283 61.8
Lj5g0009857 Lotus japonicus HOM05D004323 ORTHO05D005140 6.3e-84 315.1 286 61.5
FAN22G0457 Fragaria x ananassa HOM05D004323 ORTHO05D005140 1.4e-83 313.9 321 64.8
MD13G1027200 Malus domestica HOM05D004323 ORTHO05D005140 1.8e-83 313.5 276 62.7
Lj5g0025367 Lotus japonicus HOM05D004323 ORTHO05D005140 2.4e-83 313.2 286 61.2
Ca_17253_v3 Cicer arietinum L. HOM05D004323 ORTHO05D005140 7.7e-82 308.1 327 62.7
AT1G71080 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 2.9e-81 306.2 276 62.0
Glyma.20G125700 Glycine max HOM05D004323 ORTHO05D005140 1.9e-80 303.5 288 59.7
TWI79G0055 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 1.9e-80 303.5 279 60.9
Psat7g004960 Pisum sativum HOM05D004323 ORTHO05D005140 3.2e-80 302.8 290 59.3
Sed0006370 Sechium edule HOM05D004323 ORTHO05D005140 3.2e-80 302.8 298 60.7
CsaV3_5G010330 Cucumis sativus L. HOM05D004323 ORTHO05D005140 7.2e-80 301.6 306 59.2
Medtr8g105830 Medicago truncatula HOM05D004323 ORTHO05D005140 7.2e-80 301.6 291 61.5
Glyma.10G264800 Glycine max HOM05D004323 ORTHO05D005140 1.6e-79 300.4 289 60.2
Sabra08G0096600 Salix brachista HOM05D004323 ORTHO05D005140 2.7e-79 299.7 225 68.4
TAR629G2255 Trochodendron aralioides HOM05D004323 ORTHO05D005140 1.0e-78 297.7 284 59.9
AL2G30660 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 3.0e-78 296.2 278 61.5
MD16G1030300 Malus domestica HOM05D004323 ORTHO05D005140 3.0e-78 296.2 286 58.7
Sp5g26250 Schrenkiella parvula HOM05D004323 ORTHO05D005140 1.5e-77 293.9 279 60.2
Thhalv10018840m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 2.0e-77 293.5 296 61.8
Psat7g006200 Pisum sativum HOM05D004323 ORTHO05D005140 3.3e-77 292.7 285 58.6
Lalb_Chr06g0165621 Lupinus albus HOM05D004323 ORTHO05D005140 5.7e-77 292.0 326 61.7
VMungo0720G0280 Vigna mungo HOM05D004323 ORTHO05D005140 5.7e-77 292.0 284 58.5
Carub.0002s1789 Capsella rubella HOM05D004323 ORTHO05D005140 1.3e-76 290.8 283 59.7
TAR622G1143 Trochodendron aralioides HOM05D004323 ORTHO05D005140 1.7e-76 290.4 323 61.6
Lalb_Chr02g0145481 Lupinus albus HOM05D004323 ORTHO05D005140 3.7e-76 289.3 289 57.4
CARHR064370 Cardamine hirsuta HOM05D004323 ORTHO05D005140 4.8e-76 288.9 282 57.8
Phvul.007G037100 Phaseolus vulgaris HOM05D004323 ORTHO05D005140 1.4e-75 287.3 288 57.3
Aa31LG4G9980 Aethionema arabicum HOM05D004323 ORTHO05D005140 4.5e-74 282.3 290 57.9
BcaB03g14869 Brassica carinata HOM05D004323 ORTHO05D005140 2.2e-73 280.0 295 57.3
BolC6t39576H Brassica oleracea HOM05D004323 ORTHO05D005140 8.5e-73 278.1 294 57.1
C06p45200 Brassica napus HOM05D004323 ORTHO05D005140 1.1e-72 277.7 296 56.8
BraA07t31307Z Brassica rapa HOM05D004323 ORTHO05D005140 1.1e-72 277.7 288 58.0
ClCG07G004410 Citrullus lanatus HOM05D004323 ORTHO05D005140 1.4e-72 277.3 299 56.2
A07p37500 Brassica napus HOM05D004323 ORTHO05D005140 1.6e-71 273.9 288 56.9
GSVIVG01030895001 Vitis vinifera HOM05D004323 ORTHO05D005140 1.0e-70 271.2 293 56.3
Nn4g24090 Nelumbo nucifera HOM05D004323 ORTHO05D005140 1.4e-70 270.8 283 57.6
BcaC08g46546 Brassica carinata HOM05D004323 ORTHO05D005140 3.3e-69 266.2 295 55.3
THA.LOC104810161 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 7.4e-69 265.0 234 65.8
CDE09G0723 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 1.8e-67 260.4 288 54.5
PGR119G1370 Punica granatum HOM05D004323 ORTHO05D005140 1.8e-67 260.4 330 56.4
Dinv19000 Davidia involucrata HOM05D004323 ORTHO05D005140 4.1e-67 259.2 280 56.4
Dinv14868 Davidia involucrata HOM05D004323 ORTHO05D005140 7.7e-66 255.0 276 56.5
Cc07_g08280 Coffea canephora HOM05D004323 ORTHO05D005140 8.5e-65 251.5 295 52.9
vmacro05495 Vaccinium macrocarpon HOM05D004323 ORTHO05D005140 3.2e-64 249.6 280 55.0
Thecc.04G123700 Theobroma cacao HOM05D004323 ORTHO05D005140 1.6e-63 247.3 294 51.7
Manes.02G073900 Manihot esculenta HOM05D004323 ORTHO05D005140 2.1e-63 246.9 286 53.8
Sc14g0004810 Simmondsia chinensis HOM05D004323 ORTHO05D005140 2.1e-63 246.9 306 51.6
CSS0029895 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 3.6e-63 246.1 279 54.8
Duzib133G0462 Durio zibethinus HOM05D004323 ORTHO05D005140 3.6e-63 246.1 290 52.4
Gorai.007G185800 Gossypium raimondii HOM05D004323 ORTHO05D005140 2.3e-62 243.4 284 52.1
Rhsim10G0078500 Rhododendron simsii HOM05D004323 ORTHO05D005140 3.0e-62 243.0 297 51.2
CAN.G625.75 Capsicum annuum HOM05D004323 ORTHO05D005140 4.0e-62 242.7 289 51.6
Dinv33986 Davidia involucrata HOM05D004323 ORTHO05D005140 5.2e-62 242.3 229 60.3
COL.COLO4_27122 Corchorus olitorius HOM05D004323 ORTHO05D005140 2.0e-61 240.4 289 51.6
Gohir.D11G173500 Gossypium hirsutum HOM05D004323 ORTHO05D005140 2.0e-61 240.4 284 52.1
Gohir.A11G167200 Gossypium hirsutum HOM05D004323 ORTHO05D005140 1.3e-60 237.7 284 51.4
Cfa007861 Carpinus fangiana HOM05D004323 ORTHO05D007831 2.8e-60 236.5 281 52.3
TWI75G0714 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 2.8e-60 236.5 237 57.8
HanXRQChr12g0375961 Helianthus annuus HOM05D004323 ORTHO05D005140 6.3e-60 235.3 290 52.1
Hma1.2p1_0500F.1_g166900 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 1.8e-59 233.8 319 49.2
Hma1.2p1_1820F.1_g304196 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 1.8e-59 233.8 319 49.2
ECA246G3962 Erigeron canadensis HOM05D004323 ORTHO05D005140 2.7e-58 229.9 290 49.7
ATR0326G041 Amborella trichopoda HOM05D004323 ORTHO05D005140 3.5e-58 229.6 280 49.6
HPP92_006392 Vanilla planifolia HOM05D004323 ORTHO05D005140 3.5e-58 229.6 296 49.7
Haze_14209 Corylus avellana HOM05D004323 ORTHO05D007831 2.2e-57 226.9 306 47.7
Os01g0507500 Oryza sativa ssp. japonica HOM05D004323 ORTHO05D005140 5.0e-57 225.7 277 50.9
Lj2C436T13 Lonicera japonica HOM05D004323 ORTHO05D005140 6.5e-57 225.3 321 48.0
Prupe.3G151600 Prunus persica HOM05D004323 ORTHO05D005140 1.1e-56 224.6 287 50.2
CDE08G1420 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 2.5e-56 223.4 265 58.1
Hund14974 Selenicereus undatus HOM05D004323 ORTHO05D005140 5.5e-56 222.2 311 46.6
Zm00001eb217130 Zea mays HOM05D004323 ORTHO05D005140 5.5e-56 222.2 287 47.7
Nitab4.5_0002456g0110 Nicotiana tabacum HOM05D004323 ORTHO05D005140 7.2e-56 221.9 234 56.0
Migut.L00479 Erythranthe guttata HOM05D004323 ORTHO05D005140 9.4e-56 221.5 301 48.2
Nitab4.5_0003598g0060 Nicotiana tabacum HOM05D004323 ORTHO05D005140 1.2e-55 221.1 302 48.3
PGSC0003DMG400030599 Solanum tuberosum HOM05D004323 ORTHO05D005140 1.6e-55 220.7 230 57.0
Nn3g18066 Nelumbo nucifera HOM05D004323 ORTHO05D005140 8.0e-55 218.4 166 70.5
CiPaw.03G067400 Carya illinoinensis HOM05D004323 ORTHO05D005140 1.0e-54 218.0 286 47.9
PSO782G4339 Papaver somniferum HOM05D004323 ORTHO05D005140 1.0e-54 218.0 307 48.9
DCAR_010732 Daucus carota HOM05D004323 ORTHO05D005140 1.8e-54 217.2 294 48.0
Solyc02g091270.3 Solanum lycopersicum HOM05D004323 ORTHO05D005140 1.8e-54 217.2 226 56.6
Ciclev10012163m.g Citrus clementina HOM05D004323 ORTHO05D005140 2.3e-54 216.9 298 47.3
PSO063G1150 Papaver somniferum HOM05D004323 ORTHO05D005140 3.0e-54 216.5 307 48.2
Cpa.g.sc116.11 Carica papaya HOM05D004323 ORTHO05D005140 8.8e-54 214.9 287 49.8
Potri.004G092200 Populus trichocarpa HOM05D004323 ORTHO05D005140 1.2e-53 214.5 280 47.1
EL10Ac5g11852 Beta vulgaris HOM05D004323 ORTHO05D005140 3.4e-53 213.0 308 45.5
Zm00001eb053510 Zea mays HOM05D004323 ORTHO05D005140 3.4e-53 213.0 281 47.7
PGR004G1785 Punica granatum HOM05D004323 ORTHO05D005140 7.5e-53 211.8 285 50.5
Ah.02g115750 Amaranthus hybridus HOM05D004323 ORTHO05D005140 2.2e-52 210.3 299 49.5
SHI04771 Sapria himalayana HOM05D004323 ORTHO05D005140 2.2e-52 210.3 292 47.3
TWI53G1939 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 2.8e-52 209.9 289 47.4
Atru.chr1.1769 Acer truncatum HOM05D004323 ORTHO05D005140 8.3e-52 208.4 299 45.5
Gohir.A07G076100 Gossypium hirsutum HOM05D004323 ORTHO05D005140 1.8e-51 207.2 233 51.5
Aqoxy3G03961 Aquilegia oxysepala HOM05D004323 ORTHO05D005140 2.4e-51 206.8 278 46.4
SalBow7G2861 Salvia bowleyana HOM05D004323 ORTHO05D005140 5.4e-51 205.7 274 46.0
Gorai.001G085700 Gossypium raimondii HOM05D004323 ORTHO05D005140 7.0e-51 205.3 220 53.6
SalBow1G3118 Salvia bowleyana HOM05D004323 ORTHO05D005140 5.9e-50 202.2 200 56.0
Sopen02g035890 Solanum pennellii HOM05D004323 ORTHO05D005140 5.9e-50 202.2 226 54.9
Gohir.D07G080600 Gossypium hirsutum HOM05D004323 ORTHO05D005140 7.7e-50 201.8 220 52.7
MBI16_g32956_MAGBIO Magnolia biondii HOM05D004323 ORTHO05D005140 7.7e-50 201.8 248 52.4
Sabra04G0062000 Salix brachista HOM05D004323 ORTHO05D005140 1.0e-49 201.4 326 40.5
Eucgr.F02814 Eucalyptus grandis HOM05D004323 ORTHO05D005140 1.7e-49 200.7 284 47.2
MD09G1260000 Malus domestica HOM05D004323 ORTHO05D005140 1.9e-48 197.2 292 45.9
SGA_v2.0_scaffold174G39287 Striga asiatica HOM05D004323 ORTHO05D005140 1.6e-47 194.1 294 44.9
Oeu041976.1 Olea europaea HOM05D004323 ORTHO05D005140 1.0e-46 191.4 159 64.8
THA.LOC104805595 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 2.3e-46 190.3 290 45.2
unitig_748.g8745 Utricularia gibba HOM05D004323 ORTHO05D005140 5.2e-46 189.1 312 43.9
AUR62030721 Chenopodium quinoa HOM05D004323 ORTHO05D005140 8.8e-46 188.3 171 62.6
PSO063G0228 Papaver somniferum HOM05D004323 ORTHO05D005140 8.8e-46 188.3 126 72.2
Peaxi162Scf00803g00424 Petunia axillaris HOM05D004323 ORTHO05D005140 1.8e-43 180.6 262 45.4
SEGI_02231 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 1.8e-43 180.6 183 54.6
Oeu030805.1 Olea europaea HOM05D004323 ORTHO05D005140 3.1e-43 179.9 289 49.1
Sp7g04050 Schrenkiella parvula HOM05D004323 ORTHO05D005140 1.2e-42 177.9 293 41.3
CSS0030424 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 5.9e-42 175.6 160 61.9
CARHR214700 Cardamine hirsuta HOM05D004323 ORTHO05D005140 1.9e-40 170.6 289 39.8
Actinidia17651 Actinidia chinensis HOM05D004323 ORTHO05D005140 4.3e-40 169.5 282 41.8
AT5G38050 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 1.2e-39 167.9 282 41.1
SMO268G0019 Selaginella moellendorffii HOM05D004323 ORTHO05D005140 1.4e-38 164.5 163 57.1
Thhalv10027858m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 1.2e-37 161.4 133 58.6
AagrBONN_evm.TU.Sc2ySwM_117.2431 Anthoceros agrestis HOM05D004323 ORTHO05D005140 3.4e-37 159.8 118 63.6
AagrBONN_evm.TU.Sc2ySwM_344.4471 Anthoceros agrestis HOM05D004323 ORTHO05D005140 3.4e-37 159.8 118 63.6
Mapoly0014s0191 Marchantia polymorpha HOM05D004323 ORTHO05D005140 3.4e-37 159.8 114 65.8
CSS0049640 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 1.3e-36 157.9 156 59.0
Carub.0005s1233 Capsella rubella HOM05D004323 ORTHO05D005140 7.8e-34 148.7 281 39.9
Pp3c18_1330 Physcomitrium patens HOM05D004323 ORTHO05D005140 1.7e-33 147.5 131 58.0
Pp3c21_20610 Physcomitrium patens HOM05D004323 ORTHO05D005140 1.7e-33 147.5 117 63.2
AUR62036351 Chenopodium quinoa HOM05D004323 ORTHO05D005140 5.0e-33 146.0 186 50.0
unitig_32.g11885 Utricularia gibba HOM05D004323 ORTHO05D005140 1.9e-32 144.1 206 45.1
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 3.3e-32 143.3 164 50.0
CBR_g81558 Chara braunii HOM05D004323 ORTHO05D005140 4.4e-29 132.9 210 41.4
BcaB05g24642 Brassica carinata HOM05D004323 ORTHO05D005140 4.9e-28 129.4 171 51.5
BcaB06g27162 Brassica carinata HOM05D004323 ORTHO05D005140 6.4e-28 129.0 235 37.4
FvH4_7g01202 Fragaria vesca HOM05D004323 ORTHO05D005140 6.4e-28 129.0 77 79.2
MELO3C018369.2 Cucumis melo HOM05D004323 ORTHO05D005140 6.2e-15 85.9 128 49.2
AL7G52902 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 3.2e-11 73.6 57 59.6
FAN16G1718 Fragaria x ananassa HOM05D004323 ORTHO05D005140 1.3e-09 68.2 48 62.5
Medtr7g114200 Medicago truncatula HOM05D063531 ORTHO05D005140 3.1e-06 57.0 40 65.0


User provided reference genes

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