Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc65.111 Carica papaya HOM05D002727 ORTHO05D002856 3.7e-97 358.2 181 100.0
Sabra08G0096300 Salix brachista HOM05D002727 ORTHO05D002856 2.2e-33 146.4 146 50.7
Manes.14G135600 Manihot esculenta HOM05D002727 ORTHO05D002856 2.0e-31 139.8 138 47.8
Potri.008G128200 Populus trichocarpa HOM05D002727 ORTHO05D002856 2.7e-31 139.4 149 47.0
Sabra08G0096800 Salix brachista HOM05D002727 ORTHO05D002856 6.0e-31 138.3 148 47.3
Actinidia36683 Actinidia chinensis HOM05D002727 ORTHO05D002856 1.0e-30 137.5 130 50.0
DCAR_023615 Daucus carota HOM05D002727 ORTHO05D002856 1.0e-30 137.5 127 52.0
DCAR_007283 Daucus carota HOM05D002727 ORTHO05D002856 2.3e-30 136.3 121 51.2
Manes.17G075200 Manihot esculenta HOM05D002727 ORTHO05D002856 3.9e-30 135.6 119 53.8
Dinv05150 Davidia involucrata HOM05D002727 ORTHO05D002856 5.0e-30 135.2 129 48.8
Haze_11036 Corylus avellana HOM05D002727 ORTHO05D002856 1.1e-29 134.0 146 44.5
CSS0022209 Camellia sinensis var. sinensis HOM05D002727 ORTHO05D002856 5.6e-29 131.7 153 46.4
Duzib251G0433 Durio zibethinus HOM05D002727 ORTHO05D002856 7.3e-29 131.3 159 44.7
TAR622G1289 Trochodendron aralioides HOM05D002727 ORTHO05D002856 1.6e-28 130.2 138 50.0
Cfa008577 Carpinus fangiana HOM05D002727 ORTHO05D002856 8.0e-28 127.9 145 43.4
Atru.chr11.374 Acer truncatum HOM05D002727 ORTHO05D002856 1.1e-27 127.5 161 42.2
Nn3g16463 Nelumbo nucifera HOM05D002727 ORTHO05D002856 1.1e-27 127.5 165 39.4
Actinidia15249 Actinidia chinensis HOM05D002727 ORTHO05D002856 1.4e-27 127.1 125 48.8
Thecc.02G278300 Theobroma cacao HOM05D002727 ORTHO05D002856 1.4e-27 127.1 159 47.2
COL.COLO4_20450 Corchorus olitorius HOM05D002727 ORTHO05D002856 2.3e-27 126.3 149 44.3
HanXRQChr08g0212641 Helianthus annuus HOM05D002727 ORTHO05D002856 1.2e-26 124.0 135 40.7
Ciclev10017676m.g Citrus clementina HOM05D002727 ORTHO05D002856 2.0e-26 123.2 129 45.0
QL01p002288 Quercus lobata HOM05D002727 ORTHO05D002856 2.6e-26 122.9 158 41.8
Lsat_1_v5_gn_3_54560 Lactuca sativa HOM05D002727 ORTHO05D002856 3.4e-26 122.5 153 41.2
Atru.chr6.2573 Acer truncatum HOM05D002727 ORTHO05D002856 4.4e-26 122.1 170 41.2
vmacro10627 Vaccinium macrocarpon HOM05D002727 ORTHO05D002856 5.8e-26 121.7 151 45.0
ClCG01G006130 Citrullus lanatus HOM05D002727 ORTHO05D002856 7.5e-26 121.3 136 45.6
Eucgr.G02210 Eucalyptus grandis HOM05D002727 ORTHO05D002856 9.8e-26 120.9 127 44.9
TWI79G1492 Tripterygium wilfordii HOM05D002727 ORTHO05D002856 9.8e-26 120.9 137 46.0
Rhsim09G0100100 Rhododendron simsii HOM05D008460 ORTHO05D001602 2.2e-25 119.8 120 45.8
Sabra17G0092700 Salix brachista HOM05D002727 ORTHO05D002856 2.9e-25 119.4 130 45.4
Lalb_Chr17g0338701 Lupinus albus HOM05D002727 ORTHO05D002856 6.4e-25 118.2 146 41.8
Hma1.2p1_0114F.1_g055280 Hydrangea macrophylla HOM05D002727 ORTHO05D002856 8.3e-25 117.9 120 45.8
Medtr5g044170 Medicago truncatula HOM05D002727 ORTHO05D002856 8.3e-25 117.9 137 43.8
CANSAT01G3036 Cannabis sativa HOM05D002727 ORTHO05D002856 1.9e-24 116.7 122 49.2
Potri.017G111600 Populus trichocarpa HOM05D002727 ORTHO05D002856 1.9e-24 116.7 121 46.3
Ca_24568_v3 Cicer arietinum L. HOM05D002727 ORTHO05D002856 3.2e-24 115.9 138 42.0
FvH4_2g32760 Fragaria vesca HOM05D002727 ORTHO05D002856 3.2e-24 115.9 123 43.1
FAN20G2548 Fragaria x ananassa HOM05D002727 ORTHO05D002856 3.2e-24 115.9 123 43.9
FAN24G3357 Fragaria x ananassa HOM05D002727 ORTHO05D002856 3.2e-24 115.9 123 43.1
Ciclev10017720m.g Citrus clementina HOM05D002727 ORTHO05D002856 5.4e-24 115.2 138 36.2
FAN15G1981 Fragaria x ananassa HOM05D002727 ORTHO05D002856 5.4e-24 115.2 123 42.3
HanXRQChr15g0488631 Helianthus annuus HOM05D002727 ORTHO05D002856 5.4e-24 115.2 132 41.7
FAN27G2751 Fragaria x ananassa HOM05D002727 ORTHO05D002856 9.2e-24 114.4 123 42.3
Prupe.1G322000 Prunus persica HOM05D002727 ORTHO05D002856 9.2e-24 114.4 120 46.7
FAN05G5380 Fragaria x ananassa HOM05D002727 ORTHO05D002856 1.2e-23 114.0 148 38.5
Oeu044348.1 Olea europaea HOM05D002727 ORTHO05D002856 1.2e-23 114.0 125 44.8
QL01p002083 Quercus lobata HOM05D002727 ORTHO05D002856 1.2e-23 114.0 151 40.4
Sed0024961 Sechium edule HOM05D002727 ORTHO05D002856 1.2e-23 114.0 153 39.2
CDE04G0093 Ceratophyllum demersum HOM05D002727 ORTHO05D002856 1.6e-23 113.6 142 39.4
FAN14G2593 Fragaria x ananassa HOM05D002727 ORTHO05D002856 1.6e-23 113.6 123 42.3
Potri.008G127500 Populus trichocarpa HOM05D002727 ORTHO05D002856 1.6e-23 113.6 111 48.6
FAN05G5197 Fragaria x ananassa HOM05D002727 ORTHO05D002856 2.1e-23 113.2 148 38.5
Hma1.2p1_0951F.1_g240760 Hydrangea macrophylla HOM05D002727 ORTHO05D002856 2.1e-23 113.2 156 40.4
Hma1.2p1_2764F.1_g328145 Hydrangea macrophylla HOM05D002727 ORTHO05D002856 2.1e-23 113.2 156 40.4
PGR119G0434 Punica granatum HOM05D002727 ORTHO05D002856 2.7e-23 112.8 122 43.4
Aqoxy2G00907 Aquilegia oxysepala HOM05D002727 ORTHO05D002856 3.5e-23 112.5 135 43.7
Lsat_1_v5_gn_8_43200 Lactuca sativa HOM05D002727 ORTHO05D002856 3.5e-23 112.5 135 40.7
MD13G1026900 Malus domestica HOM05D002727 ORTHO05D002856 3.5e-23 112.5 124 42.7
CiPaw.06G012900 Carya illinoinensis HOM05D002727 ORTHO05D002856 7.8e-23 111.3 157 38.2
FAN02G0051 Fragaria x ananassa HOM05D002727 ORTHO05D002856 7.8e-23 111.3 123 40.7
Eucgr.G02206 Eucalyptus grandis HOM05D002727 ORTHO05D002856 1.0e-22 110.9 126 43.7
MELO3C012299.2 Cucumis melo HOM05D002727 ORTHO05D002856 1.3e-22 110.5 137 38.7
Psat2g129760 Pisum sativum HOM05D002727 ORTHO05D002856 1.3e-22 110.5 138 42.8
Dinv16190 Davidia involucrata HOM05D002727 ORTHO05D002856 1.7e-22 110.2 127 41.7
Medtr1g108470 Medicago truncatula HOM05D002727 ORTHO05D002856 1.7e-22 110.2 140 38.6
Lj2g0009169 Lotus japonicus HOM05D002727 ORTHO05D002856 3.0e-22 109.4 140 40.7
Migut.E00413 Erythranthe guttata HOM05D002727 ORTHO05D002856 3.9e-22 109.0 139 41.0
Lj5g0017764 Lotus japonicus HOM05D002727 ORTHO05D002856 3.9e-22 109.0 143 36.4
TPR.G24442 Trifolium pratense HOM05D002727 ORTHO05D002856 3.9e-22 109.0 164 36.6
FvH4_7g12190 Fragaria vesca HOM05D002727 ORTHO05D002856 5.1e-22 108.6 125 41.6
MELO3C005314.2 Cucumis melo HOM05D002727 ORTHO05D002856 6.6e-22 108.2 138 41.3
Glyma.20G124900 Glycine max HOM05D002727 ORTHO05D002856 6.6e-22 108.2 158 34.8
MD16G1031100 Malus domestica HOM05D002727 ORTHO05D002856 6.6e-22 108.2 121 43.8
PGR102G0802 Punica granatum HOM05D002727 ORTHO05D002856 6.6e-22 108.2 145 37.2
Ca_11101_v3 Cicer arietinum L. HOM05D002727 ORTHO05D002856 8.6e-22 107.8 128 39.1
MD13G1028200 Malus domestica HOM05D002727 ORTHO05D002856 8.6e-22 107.8 121 43.8
FAN10G0099 Fragaria x ananassa HOM05D000147 ORTHO05D007841 1.1e-21 107.5 125 40.8
Phvul.007G037300 Phaseolus vulgaris HOM05D002727 ORTHO05D002856 1.1e-21 107.5 150 36.0
Glyma.10G265700 Glycine max HOM05D002727 ORTHO05D002856 1.5e-21 107.1 158 36.1
FAN03G1798 Fragaria x ananassa HOM05D002727 ORTHO05D002856 1.9e-21 106.7 133 39.8
CsaV3_5G028530 Cucumis sativus L. HOM05D002727 ORTHO05D002856 2.5e-21 106.3 136 40.4
ECA233G4969 Erigeron canadensis HOM05D002727 ORTHO05D002856 2.5e-21 106.3 146 36.3
ClCG05G022230 Citrullus lanatus HOM05D002727 ORTHO05D002856 4.3e-21 105.5 154 35.1
CAN.G185.21 Capsicum annuum HOM05D002727 ORTHO05D002856 7.3e-21 104.8 121 38.0
ECA232G4731 Erigeron canadensis HOM05D002727 ORTHO05D002856 7.3e-21 104.8 136 38.2
Lalb_Chr21g0308511 Lupinus albus HOM05D002727 ORTHO05D002856 7.3e-21 104.8 143 36.4
CsaV3_5G034890 Cucumis sativus L. HOM05D002727 ORTHO05D002856 9.5e-21 104.4 137 37.2
Thecc.02G279300 Theobroma cacao HOM05D002727 ORTHO05D002856 9.5e-21 104.4 150 40.0
FAN06G2836 Fragaria x ananassa HOM05D002727 ORTHO05D002856 1.2e-20 104.0 125 40.0
FAN09G3462 Fragaria x ananassa HOM05D002727 ORTHO05D002856 1.6e-20 103.6 143 36.4
QL02p071341 Quercus lobata HOM05D002727 ORTHO05D002856 1.6e-20 103.6 137 42.3
VMungo0720G2475 Vigna mungo HOM05D002727 ORTHO05D002856 2.8e-20 102.8 142 35.2
Atru.chr11.407 Acer truncatum HOM05D002727 ORTHO05D002856 3.6e-20 102.4 109 46.8
Solyc05g008320.1 Solanum lycopersicum HOM05D002727 ORTHO05D002856 3.6e-20 102.4 121 38.8
Sopen05g004150 Solanum pennellii HOM05D002727 ORTHO05D002856 3.6e-20 102.4 121 38.8
TWI56G0192 Tripterygium wilfordii HOM05D002727 ORTHO05D002856 4.7e-20 102.1 125 38.4
Manes.17G103100 Manihot esculenta HOM05D002727 ORTHO05D002856 6.2e-20 101.7 144 38.2
Peaxi162Scf00205g00023 Petunia axillaris HOM05D002727 ORTHO05D002856 1.1e-19 100.9 123 35.8
Sed0008746 Sechium edule HOM05D002727 ORTHO05D002856 1.1e-19 100.9 132 36.4
SGA_v2.0_scaffold170G38831 Striga asiatica HOM05D002727 ORTHO05D002856 1.1e-19 100.9 139 36.7
RcHm_v2.0_Chr4g0440841 Rosa chinensis HOM05D002727 ORTHO05D002856 1.4e-19 100.5 121 44.6
Aqoxy1G00996 Aquilegia oxysepala HOM05D002727 ORTHO05D002856 1.8e-19 100.1 118 44.1
Cpa.g.sc65.122 Carica papaya HOM05D002727 ORTHO05D002856 1.8e-19 100.1 130 40.8
arahy.Tifrunner.gnm1.ann1.E5JI7C Arachis hypogaea HOM05D002727 ORTHO05D002856 2.3e-19 99.8 144 34.0
arahy.Tifrunner.gnm1.ann1.NZR7KS Arachis hypogaea HOM05D002727 ORTHO05D002856 2.3e-19 99.8 144 34.0
Nitab4.5_0006134g0020 Nicotiana tabacum HOM05D002727 ORTHO05D002856 2.3e-19 99.8 125 38.4
Prupe.3G306500 Prunus persica HOM05D002727 ORTHO05D002856 2.3e-19 99.8 115 41.7
PGSC0003DMG400030506 Solanum tuberosum HOM05D002727 ORTHO05D002856 2.3e-19 99.8 121 37.2
Aa31LG1G13580 Aethionema arabicum HOM05D002727 ORTHO05D002856 5.2e-19 98.6 149 37.6
Thhalv10028170m.g Eutrema salsugineum HOM05D002727 ORTHO05D002856 5.2e-19 98.6 150 35.3
FAN05G4306 Fragaria x ananassa HOM05D002727 ORTHO05D002856 5.2e-19 98.6 114 43.0
Psat6g221920 Pisum sativum HOM05D002727 ORTHO05D002856 5.2e-19 98.6 143 35.7
arahy.Tifrunner.gnm1.ann1.AV0RHQ Arachis hypogaea HOM05D002727 ORTHO05D002856 8.9e-19 97.8 161 34.2
Cpa.g.sc171.13 Carica papaya HOM05D002727 ORTHO05D002856 8.9e-19 97.8 129 38.0
FAN14G5438 Fragaria x ananassa HOM05D002727 ORTHO05D002856 8.9e-19 97.8 114 42.1
RcHm_v2.0_Chr2g0175581 Rosa chinensis HOM05D002727 ORTHO05D002856 8.9e-19 97.8 128 38.3
FvH4_4g32150 Fragaria vesca HOM05D002727 ORTHO05D002856 1.2e-18 97.4 121 43.0
FvH4_6g53540 Fragaria vesca HOM05D002727 ORTHO05D002856 1.2e-18 97.4 114 41.2
FAN12G1004 Fragaria x ananassa HOM05D002727 ORTHO05D002856 1.2e-18 97.4 121 43.0
FAN22G0940 Fragaria x ananassa HOM05D002727 ORTHO05D002856 1.2e-18 97.4 121 43.0
arahy.Tifrunner.gnm1.ann1.PT8N4B Arachis hypogaea HOM05D002727 ORTHO05D002856 1.5e-18 97.1 161 34.2
FAN07G1376 Fragaria x ananassa HOM05D002727 ORTHO05D002856 2.0e-18 96.7 121 42.1
FAN06G1687 Fragaria x ananassa HOM05D002727 ORTHO05D002856 4.4e-18 95.5 109 41.3
MD09G1010600 Malus domestica HOM05D002727 ORTHO05D002856 5.8e-18 95.1 122 36.9
THA.LOC104824147 Tarenaya hassleriana HOM05D002727 ORTHO05D002856 7.5e-18 94.7 141 34.8
THA.LOC104824571 Tarenaya hassleriana HOM05D002727 ORTHO05D002856 7.5e-18 94.7 131 36.6
arahy.Tifrunner.gnm1.ann1.A4HJXM Arachis hypogaea HOM05D002727 ORTHO05D002856 3.7e-17 92.4 153 35.3
arahy.Tifrunner.gnm1.ann1.L56H08 Arachis hypogaea HOM05D002727 ORTHO05D002856 3.7e-17 92.4 153 35.3
Carub.0007s3456 Capsella rubella HOM05D002727 ORTHO05D002856 8.3e-17 91.3 126 35.7
CARHR213470 Cardamine hirsuta HOM05D002727 ORTHO05D002856 8.3e-17 91.3 144 35.4
AT5G40940 Arabidopsis thaliana HOM05D002727 ORTHO05D002856 1.1e-16 90.9 143 35.7
EL10Ac6g14255 Beta vulgaris HOM05D002727 ORTHO05D002856 1.9e-16 90.1 128 39.8
Ah.02g128090 Amaranthus hybridus HOM05D002727 ORTHO05D002856 5.4e-16 88.6 159 34.0
PSO478G0105 Papaver somniferum HOM05D002727 ORTHO05D002856 5.4e-16 88.6 126 38.9
Sp7g01010 Schrenkiella parvula HOM05D002727 ORTHO05D002856 7.1e-16 88.2 138 36.2
CANSAT64G1895 Cannabis sativa HOM05D002727 ORTHO05D002856 1.2e-15 87.4 124 41.9
PSO017G4651 Papaver somniferum HOM05D002727 ORTHO05D002856 1.2e-15 87.4 126 36.5
Actinidia26664 Actinidia chinensis HOM05D002727 ORTHO05D002856 1.6e-15 87.0 81 53.1
FAN10G2401 Fragaria x ananassa HOM05D002727 ORTHO05D002856 1.6e-15 87.0 96 39.6
Aqoxy168s002 Aquilegia oxysepala HOM05D002727 ORTHO05D002856 2.1e-15 86.7 126 37.3
BcaC02g08989 Brassica carinata HOM05D002727 ORTHO05D002856 2.1e-15 86.7 127 37.0
A04p14000 Brassica napus HOM05D002727 ORTHO05D002856 2.7e-15 86.3 168 32.7
Glyma.09G119800 Glycine max HOM05D002727 ORTHO05D002856 2.7e-15 86.3 124 35.5
Sc18g0004340 Simmondsia chinensis HOM05D002727 ORTHO05D002856 3.5e-15 85.9 127 35.4
BcaB06g27576 Brassica carinata HOM05D002727 ORTHO05D002856 6.0e-15 85.1 127 36.2
C04p48030 Brassica napus HOM05D002727 ORTHO05D002856 1.0e-14 84.3 127 36.2
BolC4t26395H Brassica oleracea HOM05D002727 ORTHO05D002856 1.0e-14 84.3 127 36.2
AL7G48630 Arabidopsis lyrata HOM05D002727 ORTHO05D002856 1.3e-14 84.0 127 32.3
VMungo0720G0381 Vigna mungo HOM05D002727 ORTHO05D002856 1.7e-14 83.6 142 31.7
BraA04t17062Z Brassica rapa HOM05D002727 ORTHO05D002856 5.1e-14 82.0 168 32.1
PSO478G1097 Papaver somniferum HOM05D002727 ORTHO05D002856 3.3e-13 79.3 131 35.9
AUR62014130 Chenopodium quinoa HOM05D002727 ORTHO05D002856 4.3e-13 79.0 141 35.5
MD16G1030000 Malus domestica HOM05D002727 ORTHO05D002856 4.3e-13 79.0 111 39.6
PSO017G6820 Papaver somniferum HOM05D002727 ORTHO05D002856 5.6e-13 78.6 131 35.9
AUR62039553 Chenopodium quinoa HOM05D002727 ORTHO05D002856 1.6e-12 77.0 141 34.0
TPR.G4843 Trifolium pratense HOM05D002727 ORTHO05D002856 2.8e-12 76.3 87 43.7
CARHR253380 Cardamine hirsuta HOM05D002727 ORTHO05D002856 3.6e-12 75.9 143 31.5
FAN07G1475 Fragaria x ananassa HOM05D005453 ORTHO05D006520 4.7e-12 75.5 124 34.7
PSO017G3536 Papaver somniferum HOM05D002727 ORTHO05D002856 4.0e-11 72.4 119 35.3
Lalb_Chr24g0403301 Lupinus albus HOM05D002727 ORTHO05D002856 5.2e-11 72.0 114 32.5
PSO478G1911 Papaver somniferum HOM05D002727 ORTHO05D002856 1.2e-10 70.9 132 34.1
FAN07G0027 Fragaria x ananassa HOM05D002727 ORTHO05D002856 2.6e-10 69.7 124 34.7
FAN01G0002 Fragaria x ananassa HOM05D002727 ORTHO05D002856 7.6e-10 68.2 133 31.6
FAN07G2473 Fragaria x ananassa HOM05D002727 ORTHO05D002856 3.2e-08 62.8 104 34.6
Thhalv10009974m.g Eutrema salsugineum HOM05D005305 ORTHO05D006394 9.3e-08 61.2 131 31.3
CARHR015700 Cardamine hirsuta HOM05D005305 ORTHO05D006394 2.1e-07 60.1 131 31.3
Sp1g13500 Schrenkiella parvula HOM05D005305 ORTHO05D006394 6.0e-07 58.5 160 30.6
Ca_24293_v3 Cicer arietinum L. HOM05D002727 ORTHO05D002856 7.8e-07 58.2 114 28.9
Carub.0001s1494 Capsella rubella HOM05D005305 ORTHO05D006394 1.3e-06 57.4 131 29.8
Sp2g12560 Schrenkiella parvula HOM05D005305 ORTHO05D006394 1.7e-06 57.0 127 27.6
FvH4_6g20740 Fragaria vesca HOM05D002727 ORTHO05D002856 2.3e-06 56.6 123 31.7
SGA_v2.0_scaffold668G53415 Striga asiatica HOM05D002727 ORTHO05D002856 3.9e-06 55.8 76 28.9
AL1G27270 Arabidopsis lyrata HOM05D005305 ORTHO05D006394 5.1e-06 55.5 131 28.2
BcaB02g06584 Brassica carinata HOM05D005305 ORTHO05D006394 5.1e-06 55.5 129 28.7
FAN18G1847 Fragaria x ananassa HOM05D002727 ORTHO05D002856 5.1e-06 55.5 101 34.7
A08p31700 Brassica napus HOM05D005305 ORTHO05D006394 6.6e-06 55.1 127 29.9
A06p11170 Brassica napus HOM05D005305 ORTHO05D006394 8.7e-06 54.7 129 28.7
BraA08t35092Z Brassica rapa HOM05D005305 ORTHO05D006394 8.7e-06 54.7 128 29.7


User provided reference genes

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