Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc65.108 Carica papaya HOM05D004972 ORTHO05D006309 1.6e-114 416.0 201 100.0
Atru.chr11.981 Acer truncatum HOM05D004972 ORTHO05D006309 2.4e-97 359.0 197 88.3
Duzib133G0650 Durio zibethinus HOM05D004972 ORTHO05D006309 2.4e-97 359.0 199 88.9
Ciclev10016597m.g Citrus clementina HOM05D004972 ORTHO05D006309 9.1e-97 357.1 197 88.3
Manes.06G062200 Manihot esculenta HOM05D004972 ORTHO05D006309 3.4e-96 355.1 197 86.8
THA.LOC104825471 Tarenaya hassleriana HOM05D004972 ORTHO05D006309 5.9e-96 354.4 197 85.8
MD13G1028600 Malus domestica HOM05D004972 ORTHO05D006309 1.3e-95 353.2 197 85.3
Thecc.04G114900 Theobroma cacao HOM05D004972 ORTHO05D006309 1.3e-95 353.2 197 88.3
Cfa008573 Carpinus fangiana HOM05D004972 ORTHO05D006309 2.9e-95 352.1 197 86.3
MD16G1031300 Malus domestica HOM05D004972 ORTHO05D006309 5.0e-95 351.3 197 84.3
COL.COLO4_10156 Corchorus olitorius HOM05D004972 ORTHO05D006309 1.1e-94 350.1 197 88.3
FAN07G2072 Fragaria x ananassa HOM05D004972 ORTHO05D006309 2.5e-94 349.0 197 84.3
FAN22G0152 Fragaria x ananassa HOM05D004972 ORTHO05D006309 3.2e-94 348.6 197 83.8
CiPaw.06G013900 Carya illinoinensis HOM05D004972 ORTHO05D006309 4.2e-94 348.2 197 84.8
GSVIVG01011786001 Vitis vinifera HOM05D004972 ORTHO05D006309 5.5e-94 347.8 197 85.8
Gohir.D12G057200 Gossypium hirsutum HOM05D004972 ORTHO05D006309 7.2e-94 347.4 197 87.3
Prupe.1G321700 Prunus persica HOM05D004972 ORTHO05D006309 4.7e-93 344.7 196 83.7
Potri.010G115800 Populus trichocarpa HOM05D004972 ORTHO05D006309 6.1e-93 344.4 196 85.7
Rhsim09G0068400 Rhododendron simsii HOM05D004972 ORTHO05D006309 6.1e-93 344.4 197 82.2
CANSAT01G2336 Cannabis sativa HOM05D004972 ORTHO05D006309 1.0e-92 343.6 197 83.8
CiPaw.05G247000 Carya illinoinensis HOM05D004972 ORTHO05D006309 1.0e-92 343.6 197 82.7
RcHm_v2.0_Chr4g0433731 Rosa chinensis HOM05D004972 ORTHO05D006309 1.4e-92 343.2 197 81.7
Sc04g0005680 Simmondsia chinensis HOM05D004972 ORTHO05D006309 1.4e-92 343.2 197 83.8
Sopen05g004230 Solanum pennellii HOM05D004972 ORTHO05D006309 1.4e-92 343.2 197 81.7
Gohir.A12G057400 Gossypium hirsutum HOM05D004972 ORTHO05D006309 2.3e-92 342.4 197 86.3
Solyc05g008400.4 Solanum lycopersicum HOM05D004972 ORTHO05D006309 2.3e-92 342.4 197 81.2
CAN.G1693.8 Capsicum annuum HOM05D004972 ORTHO05D006309 3.0e-92 342.0 197 81.2
FAN17G1326 Fragaria x ananassa HOM05D004972 ORTHO05D006309 3.9e-92 341.7 197 82.7
Nitab4.5_0004692g0050 Nicotiana tabacum HOM05D004972 ORTHO05D006309 3.9e-92 341.7 197 81.7
PGSC0003DMG400030511 Solanum tuberosum HOM05D004972 ORTHO05D006309 3.9e-92 341.7 197 81.2
TWI79G0317 Tripterygium wilfordii HOM05D004972 ORTHO05D006309 3.9e-92 341.7 197 84.8
Dinv16188 Davidia involucrata HOM05D004972 ORTHO05D006309 8.8e-92 340.5 197 83.2
FvH4_4g26160 Fragaria vesca HOM05D004972 ORTHO05D006309 1.1e-91 340.1 197 82.7
FAN12G1431 Fragaria x ananassa HOM05D004972 ORTHO05D006309 1.1e-91 340.1 197 82.7
FAN12G3562 Fragaria x ananassa HOM05D004972 ORTHO05D006309 1.1e-91 340.1 197 82.7
Actinidia15243 Actinidia chinensis HOM05D004972 ORTHO05D006309 1.5e-91 339.7 197 81.7
Actinidia36689 Actinidia chinensis HOM05D004972 ORTHO05D006309 1.5e-91 339.7 197 81.7
Migut.L00755 Erythranthe guttata HOM05D004972 ORTHO05D006309 3.3e-91 338.6 197 81.7
Lj6C749G10 Lonicera japonica HOM05D004972 ORTHO05D006309 3.3e-91 338.6 197 82.7
Dinv05881 Davidia involucrata HOM05D004972 ORTHO05D006309 5.7e-91 337.8 197 82.2
Gohir.A07G173000 Gossypium hirsutum HOM05D004972 ORTHO05D006309 7.4e-91 337.4 197 85.8
Actinidia14945 Actinidia chinensis HOM05D004972 ORTHO05D006309 1.3e-90 336.7 197 81.2
MSTRG.882 Avicennia marina HOM05D004972 ORTHO05D006309 2.2e-90 335.9 197 82.2
AUR62014195 Chenopodium quinoa HOM05D004972 ORTHO05D006309 3.7e-90 335.1 197 81.7
Eucgr.G02212 Eucalyptus grandis HOM05D004972 ORTHO05D006309 3.7e-90 335.1 197 82.7
Gohir.D07G180500 Gossypium hirsutum HOM05D004972 ORTHO05D006309 3.7e-90 335.1 197 85.3
CSS0013445 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 4.8e-90 334.7 198 82.8
CSS0024462 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 4.8e-90 334.7 198 82.8
Peaxi162Scf00205g00614 Petunia axillaris HOM05D004972 ORTHO05D006309 4.8e-90 334.7 197 79.2
AL6G23850 Arabidopsis lyrata HOM05D004972 ORTHO05D006309 8.2e-90 334.0 196 81.6
Gorai.001G201700 Gossypium raimondii HOM05D004972 ORTHO05D006309 8.2e-90 334.0 197 84.8
Hma1.2p1_0114F.1_g055290 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 1.1e-89 333.6 197 82.2
A10p24970 Brassica napus HOM05D004972 ORTHO05D006309 1.4e-89 333.2 197 80.7
CsaV3_5G034860 Cucumis sativus L. HOM05D004972 ORTHO05D006309 1.4e-89 333.2 197 82.2
AT5G13240 Arabidopsis thaliana HOM05D004972 ORTHO05D006309 3.1e-89 332.0 196 81.6
BraA10t44559Z Brassica rapa HOM05D004972 ORTHO05D006309 3.1e-89 332.0 197 80.2
BcaC04g19133 Brassica carinata HOM05D004972 ORTHO05D006309 4.1e-89 331.6 197 80.2
BolC9t59224H Brassica oleracea HOM05D004972 ORTHO05D006309 4.1e-89 331.6 197 80.2
Carub.0006s1141 Capsella rubella HOM05D004972 ORTHO05D006309 5.3e-89 331.3 196 80.6
SGA_v2.0_scaffold50G18531 Striga asiatica HOM05D004972 ORTHO05D006309 5.3e-89 331.3 196 81.6
C09p63840 Brassica napus HOM05D004972 ORTHO05D006309 9.1e-89 330.5 197 79.7
Thhalv10014602m.g Eutrema salsugineum HOM05D004972 ORTHO05D006309 9.1e-89 330.5 197 80.2
CARHR200210 Cardamine hirsuta HOM05D004972 ORTHO05D006309 1.5e-88 329.7 196 80.6
Cc11_g09090 Coffea canephora HOM05D004972 ORTHO05D006309 3.4e-88 328.6 197 81.7
DCAR_030202 Daucus carota HOM05D004972 ORTHO05D006309 4.5e-88 328.2 197 77.7
Sp6g30750 Schrenkiella parvula HOM05D004972 ORTHO05D006309 4.5e-88 328.2 197 79.2
TAR629G1532 Trochodendron aralioides HOM05D004972 ORTHO05D006309 4.5e-88 328.2 197 81.2
Sed0026570 Sechium edule HOM05D004972 ORTHO05D006309 7.7e-88 327.4 197 80.7
QL01p002347 Quercus lobata HOM05D004972 ORTHO05D006309 1.0e-87 327.0 252 67.1
EL10Ac6g14241 Beta vulgaris HOM05D004972 ORTHO05D006309 1.7e-87 326.2 197 79.2
SalBow8G2598 Salvia bowleyana HOM05D004972 ORTHO05D006309 1.7e-87 326.2 198 80.3
Lsat_1_v5_gn_8_42761 Lactuca sativa HOM05D004972 ORTHO05D006309 1.1e-86 323.6 197 78.2
HanXRQChr08g0212881 Helianthus annuus HOM05D004972 ORTHO05D006309 5.5e-86 321.2 197 77.2
Oeu044327.1 Olea europaea HOM05D004972 ORTHO05D006309 1.6e-85 319.7 197 79.2
ECA233G6099 Erigeron canadensis HOM05D004972 ORTHO05D006309 1.4e-84 316.6 197 76.6
Hund24992 Selenicereus undatus HOM05D004972 ORTHO05D006309 2.3e-84 315.8 232 69.8
Lj5g0002039 Lotus japonicus HOM05D004972 ORTHO05D006309 3.0e-84 315.5 196 76.0
MBI07_g18719_MAGBIO Magnolia biondii HOM05D004972 ORTHO05D006309 2.6e-83 312.4 197 77.2
SGA_v2.0_scaffold38G15047 Striga asiatica HOM05D004972 ORTHO05D006309 7.4e-83 310.8 197 75.1
vmacro01431 Vaccinium macrocarpon HOM05D004972 ORTHO05D006309 7.4e-83 310.8 179 81.6
Nitab4.5_0004092g0040 Nicotiana tabacum HOM05D004972 ORTHO05D006309 1.7e-82 309.7 240 66.7
Phvul.007G035700 Phaseolus vulgaris HOM05D004972 ORTHO05D006309 3.7e-82 308.5 196 75.5
HanXRQChr07g0189871 Helianthus annuus HOM05D004972 ORTHO05D006309 8.2e-82 307.4 197 72.6
VMungo0720G3073 Vigna mungo HOM05D004972 ORTHO05D006309 8.2e-82 307.4 196 74.5
Nn2g14330 Nelumbo nucifera HOM05D004972 ORTHO05D006309 5.3e-81 304.7 197 76.1
Glyma.10G266000 Glycine max HOM05D004972 ORTHO05D006309 7.0e-81 304.3 196 75.0
Psat6g222200 Pisum sativum HOM05D004972 ORTHO05D006309 7.0e-81 304.3 192 75.5
TPR.G4886 Trifolium pratense HOM05D004972 ORTHO05D006309 3.5e-80 302.0 196 73.0
Ca_11105_v3 Cicer arietinum L. HOM05D004972 ORTHO05D006309 1.0e-79 300.4 196 74.0
Lalb_Chr06g0165661 Lupinus albus HOM05D004972 ORTHO05D006309 1.3e-79 300.1 196 73.5
PGR119G0027 Punica granatum HOM05D004972 ORTHO05D006309 2.9e-79 298.9 174 84.5
Glyma.20G124600 Glycine max HOM05D004972 ORTHO05D006309 5.0e-79 298.1 197 74.1
ClCG05G022260 Citrullus lanatus HOM05D004972 ORTHO05D006309 1.5e-78 296.6 174 82.8
MELO3C012297.2 Cucumis melo HOM05D004972 ORTHO05D006309 3.2e-78 295.4 178 80.3
Aa31LG3G14420 Aethionema arabicum HOM05D004972 ORTHO05D006309 9.4e-78 293.9 197 72.1
Haze_11044 Corylus avellana HOM05D004972 ORTHO05D006309 1.2e-77 293.5 197 75.1
Ah.02g128040 Amaranthus hybridus HOM05D004972 ORTHO05D006309 2.1e-77 292.7 199 73.4
Medtr1g108610 Medicago truncatula HOM05D004972 ORTHO05D006309 6.1e-77 291.2 203 69.5
unitig_0.g2334 Utricularia gibba HOM05D004972 ORTHO05D006309 8.0e-77 290.8 189 71.4
PSO782G3547 Papaver somniferum HOM05D004972 ORTHO05D006309 1.0e-76 290.4 199 70.9
PSO063G1195 Papaver somniferum HOM05D004972 ORTHO05D006309 1.8e-76 289.7 199 70.9
Nn6g34668 Nelumbo nucifera HOM05D004972 ORTHO05D006309 1.2e-75 287.0 197 73.1
arahy.Tifrunner.gnm1.ann1.DS7XTJ Arachis hypogaea HOM05D004972 ORTHO05D006309 5.7e-75 284.6 196 69.9
arahy.Tifrunner.gnm1.ann1.F2FLG1 Arachis hypogaea HOM05D004972 ORTHO05D006309 1.7e-74 283.1 196 69.9
arahy.Tifrunner.gnm1.ann1.YXX0BK Arachis hypogaea HOM05D004972 ORTHO05D006309 4.8e-74 281.6 196 69.4
Aqoxy3G04360 Aquilegia oxysepala HOM05D004972 ORTHO05D006309 1.8e-73 279.6 197 68.5
HPP92_015449 Vanilla planifolia HOM05D004972 ORTHO05D006309 4.1e-73 278.5 195 68.7
CDE09G0103 Ceratophyllum demersum HOM05D004972 ORTHO05D006309 5.3e-73 278.1 195 67.7
Os04g0662900 Oryza sativa ssp. japonica HOM05D004972 ORTHO05D006309 2.2e-71 272.7 197 67.5
Gorai.008G060200 Gossypium raimondii HOM05D004972 ORTHO05D006309 2.1e-69 266.2 174 79.3
Duzib138G1958 Durio zibethinus HOM05D004972 ORTHO05D006309 8.0e-69 264.2 252 60.7
BolC2t06543H Brassica oleracea HOM05D004972 ORTHO05D006309 4.0e-68 261.9 177 74.6
Zm00001eb246210 Zea mays HOM05D004972 ORTHO05D006309 3.4e-67 258.8 181 69.1
ATR0315G127 Amborella trichopoda HOM05D004972 ORTHO05D006309 1.1e-65 253.8 197 64.5
AUR62041239 Chenopodium quinoa HOM05D004972 ORTHO05D006309 4.2e-62 241.9 146 79.5
Migut.L00658 Erythranthe guttata HOM05D004972 ORTHO05D006309 7.2e-62 241.1 196 64.8
C02p06000 Brassica napus HOM05D004972 ORTHO05D006309 1.2e-59 233.8 169 69.8
Sabra10G0085700 Salix brachista HOM05D004972 ORTHO05D006309 9.8e-59 230.7 232 55.6
Sabra10G0087400 Salix brachista HOM05D004972 ORTHO05D006309 9.8e-59 230.7 232 55.6
arahy.Tifrunner.gnm1.ann1.UKIC3J Arachis hypogaea HOM05D004972 ORTHO05D006309 4.9e-58 228.4 214 56.1
SEGI_23519 Sequoiadendron giganteum HOM05D004972 ORTHO05D006309 1.1e-57 227.3 198 55.6
Pp3c11_22300 Physcomitrium patens HOM05D004972 ORTHO05D006309 2.6e-51 206.1 198 52.5
Mapoly0012s0169 Marchantia polymorpha HOM05D004972 ORTHO05D006309 3.2e-49 199.1 198 52.0
AagrBONN_evm.TU.Sc2ySwM_344.4231 Anthoceros agrestis HOM05D004972 ORTHO05D006309 5.6e-46 188.3 197 48.2
FAN17G1863 Fragaria x ananassa HOM05D004972 ORTHO05D006309 1.9e-41 173.3 101 78.2
PRCOL_00004209 Prasinoderma coloniale HOM05D004972 ORTHO05D006309 7.0e-41 171.4 194 46.9
Cre08.g364250 Chlamydomonas reinhardtii HOM05D004972 ORTHO05D006309 1.2e-40 170.6 194 45.4
MCO09G688 Micromonas commoda HOM05D004972 ORTHO05D006309 1.2e-37 160.6 197 44.2
BcaNung01872 Brassica carinata HOM05D004972 ORTHO05D006309 4.7e-37 158.7 101 73.3
SHI16322 Sapria himalayana HOM05D004972 ORTHO05D006309 1.3e-34 150.6 145 56.6
Pp3c7_4620 Physcomitrium patens HOM05D004972 ORTHO05D006309 6.0e-32 141.7 150 52.7
CSS0029214 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 1.3e-26 124.0 72 77.8
CSS0034104 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 1.3e-26 124.0 72 77.8
Hma1.2p1_1593F.1_g292560 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 1.2e-24 117.5 72 73.6
Zm00001eb219440 Zea mays HOM05D009386 ORTHO05D011419 9.0e-20 101.3 65 69.2
CSS0010746 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 1.9e-17 93.6 51 82.4
CSS0040756 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 1.9e-17 93.6 51 82.4
CSS0044245 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 4.2e-17 92.4 51 82.4
Hma1.2p1_0813F.1_g222490 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 1.2e-16 90.9 51 82.4
CDE02G3434 Ceratophyllum demersum HOM05D004972 ORTHO05D000215 1.6e-16 90.5 100 53.0
Zm00001eb025950 Zea mays HOM05D004972 ORTHO05D006309 1.5e-14 84.0 49 73.5
CSS0013064 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 5.3e-12 75.5 51 74.5
Cfa026650 Carpinus fangiana HOM05D004972 ORTHO05D006309 1.2e-11 74.3 224 28.1
Gohir.D11G085800 Gossypium hirsutum HOM05D001136 ORTHO05D011526 4.5e-11 72.4 37 89.2
SEGI_16480 Sequoiadendron giganteum HOM05D004972 ORTHO05D006309 4.5e-11 72.4 51 68.6
Gorai.010G145600 Gossypium raimondii HOM05D004972 ORTHO05D029864 4.9e-10 68.9 51 66.7
Gorai.001G193400 Gossypium raimondii HOM05D004972 ORTHO05D029864 1.9e-09 67.0 77 49.4
Gohir.D01G091150 Gossypium hirsutum HOM05D004972 ORTHO05D029864 1.6e-08 63.9 94 43.6
SHI16326 Sapria himalayana HOM05D004972 ORTHO05D006309 1.0e-07 61.2 56 58.9


User provided reference genes

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