Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc64.93 Carica papaya HOM05D006622 ORTHO05D007939 3.2e-107 391.7 191 100.0
Thecc.08G125800 Theobroma cacao HOM05D006622 ORTHO05D007939 7.8e-74 280.8 176 77.3
Ciclev10001495m.g Citrus clementina HOM05D006622 ORTHO05D007939 3.0e-73 278.9 177 77.4
Actinidia29467 Actinidia chinensis HOM05D006622 ORTHO05D007939 1.1e-72 276.9 176 77.3
Cfa016021 Carpinus fangiana HOM05D006622 ORTHO05D007939 1.1e-72 276.9 176 78.4
Atru.chr13.1464 Acer truncatum HOM05D006622 ORTHO05D007939 5.6e-72 274.6 176 76.7
Prupe.1G495500 Prunus persica HOM05D006622 ORTHO05D007939 5.6e-72 274.6 176 76.1
vmacro00835 Vaccinium macrocarpon HOM05D006622 ORTHO05D007939 5.6e-72 274.6 176 75.0
RhsimUnG0092500 Rhododendron simsii HOM05D006622 ORTHO05D007939 2.1e-71 272.7 176 75.0
CSS0023480 Camellia sinensis var. sinensis HOM05D006622 ORTHO05D007939 2.8e-71 272.3 176 75.0
CSS0048522 Camellia sinensis var. sinensis HOM05D006622 ORTHO05D007939 2.8e-71 272.3 176 75.0
Dinv27309 Davidia involucrata HOM05D006622 ORTHO05D007939 6.2e-71 271.2 176 76.7
CiPaw.06G031300 Carya illinoinensis HOM05D006622 ORTHO05D007939 1.1e-70 270.4 169 75.1
FAN15G0029 Fragaria x ananassa HOM05D006622 ORTHO05D007939 1.1e-70 270.4 168 76.8
MD15G1347700 Malus domestica HOM05D006622 ORTHO05D007939 3.1e-70 268.9 176 74.4
TAR628G0332 Trochodendron aralioides HOM05D006622 ORTHO05D007939 9.0e-70 267.3 176 77.8
Sabra05G0134700 Salix brachista HOM05D006622 ORTHO05D007939 2.0e-69 266.2 178 75.3
FvH4_2g26990 Fragaria vesca HOM05D006622 ORTHO05D007939 3.4e-69 265.4 168 76.2
FAN24G2914 Fragaria x ananassa HOM05D006622 ORTHO05D007939 3.4e-69 265.4 168 76.2
Atru.chr13.1486 Acer truncatum HOM05D006622 ORTHO05D007939 4.5e-69 265.0 161 78.9
QL09p034510 Quercus lobata HOM05D006622 ORTHO05D007939 4.5e-69 265.0 176 74.4
RcHm_v2.0_Chr6g0295871 Rosa chinensis HOM05D006622 ORTHO05D007939 5.8e-69 264.6 176 74.4
Eucgr.F04350 Eucalyptus grandis HOM05D006622 ORTHO05D007939 7.6e-69 264.2 177 73.4
Potri.002G083300 Populus trichocarpa HOM05D006622 ORTHO05D007939 7.6e-69 264.2 175 75.4
Potri.005G178200 Populus trichocarpa HOM05D006622 ORTHO05D007939 3.8e-68 261.9 178 74.2
ClCG08G005670 Citrullus lanatus HOM05D006622 ORTHO05D007939 4.9e-68 261.5 176 73.9
Duzib093G0047 Durio zibethinus HOM05D006622 ORTHO05D007939 4.9e-68 261.5 169 73.4
CARHR022170 Cardamine hirsuta HOM05D006622 ORTHO05D007939 6.4e-68 261.2 178 73.6
Thhalv10008385m.g Eutrema salsugineum HOM05D006622 ORTHO05D007939 6.4e-68 261.2 179 73.7
AL1G34990 Arabidopsis lyrata HOM05D006622 ORTHO05D007939 1.1e-67 260.4 164 77.4
AT1G21790 Arabidopsis thaliana HOM05D006622 ORTHO05D007939 1.1e-67 260.4 179 73.2
Aqoxy5G02345 Aquilegia oxysepala HOM05D006622 ORTHO05D007939 1.9e-67 259.6 177 72.9
TWI60G0608 Tripterygium wilfordii HOM05D006622 ORTHO05D007939 1.9e-67 259.6 177 74.6
Carub.0001s2125 Capsella rubella HOM05D006622 ORTHO05D007939 5.4e-67 258.1 164 76.8
Aa31LG7G5770 Aethionema arabicum HOM05D006622 ORTHO05D007939 1.2e-66 256.9 178 73.6
DCAR_003552 Daucus carota HOM05D006622 ORTHO05D007939 1.2e-66 256.9 174 71.8
Oeu040412.1 Olea europaea HOM05D006622 ORTHO05D007939 1.2e-66 256.9 180 70.6
Oeu040413.1 Olea europaea HOM05D006622 ORTHO05D007939 1.2e-66 256.9 180 70.6
BcaB07g32178 Brassica carinata HOM05D006622 ORTHO05D007939 1.6e-66 256.5 176 73.3
COL.COLO4_20860 Corchorus olitorius HOM05D006622 ORTHO05D007939 2.7e-66 255.8 194 67.0
Manes.18G077500 Manihot esculenta HOM05D006622 ORTHO05D007939 3.5e-66 255.4 174 72.4
C05p20800 Brassica napus HOM05D006622 ORTHO05D007939 6.0e-66 254.6 176 73.3
Gohir.A05G268900 Gossypium hirsutum HOM05D006622 ORTHO05D007939 7.9e-66 254.2 176 69.9
PGR044G1562 Punica granatum HOM05D006622 ORTHO05D007939 7.9e-66 254.2 176 71.6
THA.LOC104800197 Tarenaya hassleriana HOM05D006622 ORTHO05D007939 1.8e-65 253.1 176 73.3
Gohir.D05G270800 Gossypium hirsutum HOM05D006622 ORTHO05D007939 2.3e-65 252.7 176 69.9
BcaC05g26102 Brassica carinata HOM05D006622 ORTHO05D007939 5.1e-65 251.5 176 72.7
BolC5t30779H Brassica oleracea HOM05D006622 ORTHO05D007939 5.1e-65 251.5 176 72.7
A06p17900 Brassica napus HOM05D006622 ORTHO05D007939 1.1e-64 250.4 176 71.6
BraA06t24880Z Brassica rapa HOM05D006622 ORTHO05D007939 1.1e-64 250.4 176 71.6
Hund26807 Selenicereus undatus HOM05D006622 ORTHO05D007939 1.1e-64 250.4 176 71.6
Gorai.009G283400 Gossypium raimondii HOM05D006622 ORTHO05D007939 3.3e-64 248.8 176 69.3
GSVIVG01008863001 Vitis vinifera HOM05D006622 ORTHO05D007939 3.3e-64 248.8 151 79.5
MELO3C010612.2 Cucumis melo HOM05D006622 ORTHO05D007939 5.6e-64 248.1 178 70.8
Haze_00437 Corylus avellana HOM05D006622 ORTHO05D007939 1.6e-63 246.5 245 55.9
Ca_16559_v3 Cicer arietinum L. HOM05D006622 ORTHO05D007939 2.1e-63 246.1 170 71.8
EL10Ac1g01019 Beta vulgaris HOM05D006622 ORTHO05D007939 2.8e-63 245.7 179 70.4
CsaV3_6G034460 Cucumis sativus L. HOM05D006622 ORTHO05D007939 1.8e-62 243.0 178 69.7
TPR.G21062 Trifolium pratense HOM05D006622 ORTHO05D007939 2.4e-62 242.7 161 72.0
Lj1g0017707 Lotus japonicus HOM05D006622 ORTHO05D007939 1.2e-61 240.4 168 71.4
MSTRG.24172 Avicennia marina HOM05D006622 ORTHO05D007939 7.6e-61 237.7 170 71.2
PSO017G0487 Papaver somniferum HOM05D006622 ORTHO05D007939 4.9e-60 235.0 161 73.3
Psat5g087320 Pisum sativum HOM05D006622 ORTHO05D007939 4.9e-60 235.0 182 65.4
Medtr3g088060 Medicago truncatula HOM05D006622 ORTHO05D007939 3.2e-59 232.3 165 67.3
arahy.Tifrunner.gnm1.ann1.29UIE3 Arachis hypogaea HOM05D006622 ORTHO05D007939 4.2e-59 231.9 171 68.4
ATR0584G160 Amborella trichopoda HOM05D006622 ORTHO05D007939 7.1e-59 231.1 169 68.6
arahy.Tifrunner.gnm1.ann1.9BP3HC Arachis hypogaea HOM05D006622 ORTHO05D007939 7.1e-59 231.1 182 64.8
Migut.N03281 Erythranthe guttata HOM05D006622 ORTHO05D007939 4.6e-58 228.4 170 67.6
Lalb_Chr11g0065931 Lupinus albus HOM05D006622 ORTHO05D007939 4.6e-58 228.4 170 64.7
Cc10_g11940 Coffea canephora HOM05D006622 ORTHO05D007939 1.8e-57 226.5 166 69.3
PSO478G0228 Papaver somniferum HOM05D006622 ORTHO05D007939 3.9e-57 225.3 161 72.0
Phvul.009G125300 Phaseolus vulgaris HOM05D006622 ORTHO05D007939 5.1e-57 224.9 163 69.3
VMungo1309G2133 Vigna mungo HOM05D006622 ORTHO05D007939 5.1e-57 224.9 163 69.3
HPP92_013761 Vanilla planifolia HOM05D006622 ORTHO05D007939 8.7e-57 224.2 176 63.1
CAN.G69.14 Capsicum annuum HOM05D006622 ORTHO05D007939 1.5e-56 223.4 177 66.7
Lsat_1_v5_gn_4_135580 Lactuca sativa HOM05D006622 ORTHO05D007939 1.5e-56 223.4 161 70.8
HanXRQChr09g0260611 Helianthus annuus HOM05D006622 ORTHO05D007939 2.5e-56 222.6 174 65.5
CANSAT35G0359 Cannabis sativa HOM05D006622 ORTHO05D007939 1.3e-55 220.3 185 67.6
CDE06G0548 Ceratophyllum demersum HOM05D006622 ORTHO05D007939 1.3e-55 220.3 158 67.7
Glyma.06G113400 Glycine max HOM05D006622 ORTHO05D007939 1.6e-55 219.9 163 69.9
ECA232G1829 Erigeron canadensis HOM05D006622 ORTHO05D007939 2.8e-55 219.2 169 67.5
CANSAT35G1811 Cannabis sativa HOM05D006622 ORTHO05D007939 6.2e-55 218.0 185 66.5
Glyma.04G249500 Glycine max HOM05D006622 ORTHO05D007939 1.1e-54 217.2 164 67.1
PGSC0003DMG400044436 Solanum tuberosum HOM05D006622 ORTHO05D007939 1.1e-54 217.2 180 65.6
PGSC0003DMG402008996 Solanum tuberosum HOM05D006622 ORTHO05D007939 1.1e-54 217.2 180 65.6
Zm00001eb366620 Zea mays HOM05D006622 ORTHO05D007939 1.1e-54 217.2 174 63.2
Os01g0869600 Oryza sativa ssp. japonica HOM05D006622 ORTHO05D007939 6.9e-54 214.5 162 67.3
Zm00001eb146520 Zea mays HOM05D006622 ORTHO05D007939 6.9e-54 214.5 174 63.2
SGA_v2.0_scaffold24G10458 Striga asiatica HOM05D006622 ORTHO05D007939 3.4e-53 212.2 170 65.9
Nitab4.5_0000630g0130 Nicotiana tabacum HOM05D006622 ORTHO05D007939 1.3e-52 210.3 170 67.6
Solyc01g079770.2 Solanum lycopersicum HOM05D006622 ORTHO05D007939 8.4e-52 207.6 180 63.3
Sopen01g031530 Solanum pennellii HOM05D006622 ORTHO05D007939 1.6e-50 203.4 180 62.8
Sc15g0002770 Simmondsia chinensis HOM05D006622 ORTHO05D007939 7.9e-50 201.1 176 60.2
AUR62014332 Chenopodium quinoa HOM05D006622 ORTHO05D007939 3.0e-41 172.6 167 56.9
AagrBONN_evm.TU.Sc2ySwM_117.1000 Anthoceros agrestis HOM05D006622 ORTHO05D007939 5.5e-35 151.8 190 46.8
PGSC0003DMG400007898 Solanum tuberosum HOM05D006622 ORTHO05D007939 2.7e-34 149.4 141 58.2
FAN20G1317 Fragaria x ananassa HOM05D006622 ORTHO05D007939 7.9e-34 147.9 77 89.6
AUR62019075 Chenopodium quinoa HOM05D006622 ORTHO05D007939 1.0e-33 147.5 92 77.2
Sed0026599 Sechium edule HOM05D006622 ORTHO05D007939 2.6e-32 142.9 77 84.4
Sp1g19350 Schrenkiella parvula HOM05D006622 ORTHO05D007939 3.3e-32 142.5 77 85.7
Peaxi162Scf01270g00111 Petunia axillaris HOM05D006622 ORTHO05D007939 9.7e-32 141.0 110 65.5
Mapoly0055s0084 Marchantia polymorpha HOM05D006622 ORTHO05D007939 8.2e-31 137.9 180 43.3
MD08G1162300 Malus domestica HOM05D006622 ORTHO05D007939 5.3e-30 135.2 76 81.6
Aa31LG4G7650 Aethionema arabicum HOM05D006622 ORTHO05D007939 3.4e-29 132.5 77 81.8
Nitab4.5_0000968g0040 Nicotiana tabacum HOM05D006622 ORTHO05D007939 5.9e-29 131.7 116 63.8
SMO351G0129 Selaginella moellendorffii HOM05D006622 ORTHO05D007939 3.6e-26 122.5 175 43.4
Pp3c12_11900 Physcomitrium patens HOM05D006622 ORTHO05D007939 2.8e-23 112.8 186 38.7
Lj7C341T14 Lonicera japonica HOM05D006622 ORTHO05D007939 1.6e-21 107.1 73 69.9
Actinidia03468 Actinidia chinensis HOM05D006622 ORTHO05D007939 1.0e-20 104.4 88 62.5
CDE08G0135 Ceratophyllum demersum HOM05D006622 ORTHO05D007939 1.3e-20 104.0 88 59.1
Nn5g28301 Nelumbo nucifera HOM05D006622 ORTHO05D007939 6.5e-20 101.7 84 64.3
HPP92_013753 Vanilla planifolia HOM05D006622 ORTHO05D007939 2.0e-13 80.1 77 54.5
CBR_g40088 Chara braunii HOM05D006622 ORTHO05D007939 3.2e-11 72.8 64 57.8
AagrBONN_evm.TU.Sc2ySwM_117.993 Anthoceros agrestis HOM05D006622 ORTHO05D007939 3.6e-10 69.3 112 41.1
unitig_748.g7104 Utricularia gibba HOM05D006622 ORTHO05D007939 1.4e-09 67.4 71 50.7
AagrBONN_evm.TU.Sc2ySwM_117.972 Anthoceros agrestis HOM05D006622 ORTHO05D007939 1.3e-07 60.8 121 38.8


User provided reference genes

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