Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc64.85 Carica papaya HOM05D004006 ORTHO05D004585 2.2e-131 472.2 234 100.0
Duzib093G0488 Durio zibethinus HOM05D004006 ORTHO05D004585 2.2e-30 136.7 127 62.2
COL.COLO4_35922 Corchorus olitorius HOM05D004006 ORTHO05D004585 3.8e-30 136.0 131 63.4
Thecc.08G124900 Theobroma cacao HOM05D004006 ORTHO05D004585 8.5e-30 134.8 146 56.2
TWI36G0058 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 2.5e-29 133.3 129 61.2
Gohir.A05G235000 Gossypium hirsutum HOM05D004006 ORTHO05D004585 3.2e-29 132.9 130 60.0
Gorai.009G245700 Gossypium raimondii HOM05D004006 ORTHO05D004585 3.2e-29 132.9 130 60.0
TWI56G0850 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 5.5e-29 132.1 121 62.0
Duzib116G0782 Durio zibethinus HOM05D004006 ORTHO05D004585 1.2e-28 131.0 151 54.3
Gohir.D01G180600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.6e-28 130.6 124 59.7
Gorai.002G222000 Gossypium raimondii HOM05D004006 ORTHO05D004585 1.6e-28 130.6 124 59.7
Gohir.D05G237300 Gossypium hirsutum HOM05D004006 ORTHO05D004585 2.1e-28 130.2 130 59.2
Gohir.A01G188900 Gossypium hirsutum HOM05D004006 ORTHO05D004585 2.7e-28 129.8 126 59.5
Prupe.1G498100 Prunus persica HOM05D004006 ORTHO05D004585 1.0e-27 127.9 139 54.0
MD15G1349700 Malus domestica HOM05D004006 ORTHO05D004585 1.4e-27 127.5 129 58.9
GSVIVG01008871001 Vitis vinifera HOM05D004006 ORTHO05D004585 1.4e-27 127.5 121 59.5
Duzib041G0805 Durio zibethinus HOM05D004006 ORTHO05D004585 2.3e-27 126.7 128 57.8
Manes.18G077000 Manihot esculenta HOM05D004006 ORTHO05D004585 4.0e-27 125.9 126 61.9
Manes.02G162900 Manihot esculenta HOM05D004006 ORTHO05D004585 5.2e-27 125.6 121 57.9
Potri.005G177600 Populus trichocarpa HOM05D004006 ORTHO05D004585 1.2e-26 124.4 125 57.6
Dinv27317 Davidia involucrata HOM05D004006 ORTHO05D004585 7.5e-26 121.7 133 48.1
Lj1g0016270 Lotus japonicus HOM05D004006 ORTHO05D004585 1.3e-25 120.9 119 58.0
CSS0040709 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 1.7e-25 120.6 115 58.3
FAN24G3177 Fragaria x ananassa HOM05D004006 ORTHO05D004585 1.7e-25 120.6 141 53.2
FvH4_2g26860 Fragaria vesca HOM05D004006 ORTHO05D004585 3.7e-25 119.4 141 51.8
CSS0019596 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 6.3e-25 118.6 128 51.6
FAN27G3464 Fragaria x ananassa HOM05D004006 ORTHO05D004585 1.1e-24 117.9 141 52.5
RcHm_v2.0_Chr6g0295711 Rosa chinensis HOM05D004006 ORTHO05D004585 1.4e-24 117.5 120 59.2
Nn5g28281 Nelumbo nucifera HOM05D004006 ORTHO05D004585 1.8e-24 117.1 115 56.5
Sabra05G0134100 Salix brachista HOM05D004006 ORTHO05D004585 1.8e-24 117.1 191 40.3
Haze_00445 Corylus avellana HOM05D004006 ORTHO05D004585 2.4e-24 116.7 129 62.0
FAN20G2831 Fragaria x ananassa HOM05D004006 ORTHO05D004585 2.4e-24 116.7 141 51.8
MD08G1163000 Malus domestica HOM05D004006 ORTHO05D004585 4.1e-24 115.9 126 54.8
TAR628G0258 Trochodendron aralioides HOM05D004006 ORTHO05D004585 4.1e-24 115.9 129 52.7
CiPaw.06G030700 Carya illinoinensis HOM05D004006 ORTHO05D004585 5.3e-24 115.5 142 53.5
Ciclev10002301m.g Citrus clementina HOM05D004006 ORTHO05D004585 7.0e-24 115.2 127 52.8
Glyma.04G249900 Glycine max HOM05D004006 ORTHO05D004585 9.1e-24 114.8 122 59.0
Hma1.2p1_0186F.1_g081800 Hydrangea macrophylla HOM05D004006 ORTHO05D004585 9.1e-24 114.8 117 53.0
Cfa016015 Carpinus fangiana HOM05D004006 ORTHO05D004585 1.2e-23 114.4 128 60.2
Nn1g08787 Nelumbo nucifera HOM05D004006 ORTHO05D004585 1.6e-23 114.0 123 56.1
Phvul.009G124900 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 1.6e-23 114.0 137 54.0
MSTRG.1442 Avicennia marina HOM05D004006 ORTHO05D004585 2.7e-23 113.2 121 52.9
Eucgr.F04353 Eucalyptus grandis HOM05D004006 ORTHO05D004585 3.5e-23 112.8 133 51.9
Potri.002G083900 Populus trichocarpa HOM05D004006 ORTHO05D004585 7.7e-23 111.7 120 51.7
TAR376G1087 Trochodendron aralioides HOM05D004006 ORTHO05D004585 1.0e-22 111.3 129 52.7
Actinidia21321 Actinidia chinensis HOM05D004006 ORTHO05D004585 1.7e-22 110.5 131 50.4
Aqoxy6G00215 Aquilegia oxysepala HOM05D004006 ORTHO05D004585 2.2e-22 110.2 117 53.8
Sed0014468 Sechium edule HOM05D004006 ORTHO05D004585 8.5e-22 108.2 123 52.0
vmacro00834 Vaccinium macrocarpon HOM05D004006 ORTHO05D004585 1.1e-21 107.8 118 52.5
Gorai.005G089800 Gossypium raimondii HOM05D004006 ORTHO05D004585 1.5e-21 107.5 130 51.5
Lalb_Chr23g0271011 Lupinus albus HOM05D004006 ORTHO05D004585 3.2e-21 106.3 120 52.5
THA.LOC104800196 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 3.2e-21 106.3 122 54.9
Glyma.14G150000 Glycine max HOM05D004006 ORTHO05D004585 5.5e-21 105.5 117 49.6
Gohir.A02G073100 Gossypium hirsutum HOM05D004006 ORTHO05D004585 9.4e-21 104.8 130 50.0
Oeu050916.1 Olea europaea HOM05D004006 ORTHO05D004585 1.2e-20 104.4 123 47.2
Atru.chr13.1448 Acer truncatum HOM05D004006 ORTHO05D004585 2.1e-20 103.6 126 48.4
Atru.chr13.1472 Acer truncatum HOM05D004006 ORTHO05D004585 2.1e-20 103.6 126 48.4
Glyma.06G113000 Glycine max HOM05D004006 ORTHO05D004585 3.6e-20 102.8 122 53.3
Lalb_Chr08g0241451 Lupinus albus HOM05D004006 ORTHO05D004585 3.6e-20 102.8 124 48.4
Oeu050917.2 Olea europaea HOM05D004006 ORTHO05D004585 3.6e-20 102.8 123 46.3
Lj7P340T24 Lonicera japonica HOM05D004006 ORTHO05D004585 4.7e-20 102.4 124 46.8
CARHR022190 Cardamine hirsuta HOM05D004006 ORTHO05D004585 6.1e-20 102.1 118 53.4
ClCG08G005630 Citrullus lanatus HOM05D004006 ORTHO05D004585 8.0e-20 101.7 120 51.7
Glyma.13G079800 Glycine max HOM05D004006 ORTHO05D004585 1.0e-19 101.3 115 51.3
Gohir.D02G080400 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.0e-19 101.3 130 49.2
Actinidia29465 Actinidia chinensis HOM05D004006 ORTHO05D004585 1.8e-19 100.5 120 53.3
MSTRG.25384 Avicennia marina HOM05D004006 ORTHO05D004585 1.8e-19 100.5 130 49.2
PGR044G2543 Punica granatum HOM05D004006 ORTHO05D004585 1.8e-19 100.5 132 47.0
A06p17910 Brassica napus HOM05D004006 ORTHO05D004585 2.3e-19 100.1 119 52.1
BraA06t24881Z Brassica rapa HOM05D004006 ORTHO05D004585 2.3e-19 100.1 119 52.1
Sp1g19380 Schrenkiella parvula HOM05D004006 ORTHO05D004585 2.3e-19 100.1 119 52.1
BcaC07g39124 Brassica carinata HOM05D004006 ORTHO05D004585 3.0e-19 99.8 122 50.8
C08p21130 Brassica napus HOM05D004006 ORTHO05D004585 3.0e-19 99.8 122 50.8
BolC8t49750H Brassica oleracea HOM05D004006 ORTHO05D004585 3.0e-19 99.8 122 50.8
CsaV3_6G034510 Cucumis sativus L. HOM05D004006 ORTHO05D004585 3.0e-19 99.8 120 50.8
Thhalv10008805m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 3.0e-19 99.8 119 52.1
SGA_v2.0_scaffold52G18967 Striga asiatica HOM05D004006 ORTHO05D004585 3.0e-19 99.8 125 47.2
Ca_16556_v3 Cicer arietinum L. HOM05D004006 ORTHO05D004585 4.0e-19 99.4 137 47.4
MSTRG.22410 Avicennia marina HOM05D004006 ORTHO05D004585 5.2e-19 99.0 129 47.3
BcaB07g32181 Brassica carinata HOM05D004006 ORTHO05D004585 5.2e-19 99.0 119 51.3
BcaC05g26103 Brassica carinata HOM05D004006 ORTHO05D004585 5.2e-19 99.0 119 51.3
C05p20810 Brassica napus HOM05D004006 ORTHO05D004585 5.2e-19 99.0 119 51.3
Cc10_g11860 Coffea canephora HOM05D004006 ORTHO05D004585 6.8e-19 98.6 113 49.6
Rhsim06G0103600 Rhododendron simsii HOM05D004006 ORTHO05D004585 8.8e-19 98.2 123 48.0
MELO3C010605.2 Cucumis melo HOM05D004006 ORTHO05D004585 1.2e-18 97.8 120 50.0
Lalb_Chr10g0101721 Lupinus albus HOM05D004006 ORTHO05D004585 1.2e-18 97.8 132 47.7
BolC5t30780H Brassica oleracea HOM05D004006 ORTHO05D004585 1.5e-18 97.4 119 50.4
VMungo1309G2318 Vigna mungo HOM05D004006 ORTHO05D004585 1.5e-18 97.4 133 45.1
A08p28790 Brassica napus HOM05D004006 ORTHO05D004585 2.0e-18 97.1 122 50.0
BraA08t34808Z Brassica rapa HOM05D004006 ORTHO05D004585 2.0e-18 97.1 122 50.0
Actinidia03470 Actinidia chinensis HOM05D004006 ORTHO05D004585 2.6e-18 96.7 120 50.8
AL1G35020 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 2.6e-18 96.7 116 51.7
AT1G21830 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 2.6e-18 96.7 116 51.7
Carub.0001s2127 Capsella rubella HOM05D004006 ORTHO05D004585 2.6e-18 96.7 116 51.7
Migut.C01125 Erythranthe guttata HOM05D004006 ORTHO05D004585 2.6e-18 96.7 104 51.0
MBI09_g12159_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 3.4e-18 96.3 116 47.4
BcaB03g11881 Brassica carinata HOM05D004006 ORTHO05D004585 4.4e-18 95.9 119 49.6
Peaxi162Scf00018g00027 Petunia axillaris HOM05D004006 ORTHO05D004585 4.4e-18 95.9 142 45.1
EL10Ac1g01007 Beta vulgaris HOM05D004006 ORTHO05D004585 5.7e-18 95.5 156 41.0
BcaB03g14254 Brassica carinata HOM05D004006 ORTHO05D004585 5.7e-18 95.5 117 50.4
Sabra02G0065700 Salix brachista HOM05D004006 ORTHO05D004585 5.7e-18 95.5 214 36.0
THA.LOC104813655 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 5.7e-18 95.5 123 49.6
TPR.G21067 Trifolium pratense HOM05D004006 ORTHO05D004585 5.7e-18 95.5 132 47.0
A07p14920 Brassica napus HOM05D004006 ORTHO05D004585 7.5e-18 95.1 123 48.8
BcaB07g32179 Brassica carinata HOM05D004006 ORTHO05D004585 9.8e-18 94.7 117 50.4
BraA07t29235Z Brassica rapa HOM05D004006 ORTHO05D004585 9.8e-18 94.7 122 49.2
Nitab4.5_0016080g0010 Nicotiana tabacum HOM05D004006 ORTHO05D004585 1.3e-17 94.4 139 45.3
Oeu059434.1 Olea europaea HOM05D004006 ORTHO05D004585 1.7e-17 94.0 110 48.2
PGSC0003DMG400027788 Solanum tuberosum HOM05D004006 ORTHO05D004585 2.2e-17 93.6 125 44.8
BcaC06g34904 Brassica carinata HOM05D004006 ORTHO05D004585 2.8e-17 93.2 119 49.6
C07p21950 Brassica napus HOM05D004006 ORTHO05D004585 2.8e-17 93.2 119 49.6
BolC7t42725H Brassica oleracea HOM05D004006 ORTHO05D004585 2.8e-17 93.2 119 49.6
Gohir.D05G270600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 4.8e-17 92.4 116 50.0
Psat5g087920 Pisum sativum HOM05D004006 ORTHO05D004585 4.8e-17 92.4 122 47.5
Gorai.009G283200 Gossypium raimondii HOM05D004006 ORTHO05D004585 8.3e-17 91.7 116 50.9
Oeu047951.1 Olea europaea HOM05D004006 ORTHO05D004585 8.3e-17 91.7 108 45.4
SalBow7G3581 Salvia bowleyana HOM05D004006 ORTHO05D004585 8.3e-17 91.7 117 46.2
SGA_v2.0_scaffold24G10460 Striga asiatica HOM05D004006 ORTHO05D004585 8.3e-17 91.7 119 46.2
CDE02G3357 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 1.8e-16 90.5 118 43.2
Oeu026152.1 Olea europaea HOM05D004006 ORTHO05D004585 1.8e-16 90.5 103 49.5
Solyc11g013450.2 Solanum lycopersicum HOM05D004006 ORTHO05D004585 1.8e-16 90.5 127 43.3
CDE06G0283 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 3.1e-16 89.7 115 43.5
PSO528G0204 Papaver somniferum HOM05D004006 ORTHO05D004585 7.0e-16 88.6 144 42.4
SGA_v2.0_scaffold25G11123 Striga asiatica HOM05D004006 ORTHO05D004585 9.1e-16 88.2 142 38.0
arahy.Tifrunner.gnm1.ann1.J26PKP Arachis hypogaea HOM05D004006 ORTHO05D004585 1.2e-15 87.8 139 41.0
Hund17292 Selenicereus undatus HOM05D004006 ORTHO05D004585 1.6e-15 87.4 135 43.0
CANSAT25G0779 Cannabis sativa HOM05D004006 ORTHO05D004585 3.5e-15 86.3 140 41.4
Gohir.A05G268750 Gossypium hirsutum HOM05D004006 ORTHO05D004585 4.5e-15 85.9 142 45.1
Medtr3g088010 Medicago truncatula HOM05D004006 ORTHO05D004585 4.5e-15 85.9 149 42.3
CDE08G0380 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 7.7e-15 85.1 118 41.5
arahy.Tifrunner.gnm1.ann1.CFE04G Arachis hypogaea HOM05D004006 ORTHO05D004585 1.3e-14 84.3 137 40.1
CDE08G1629 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 1.7e-14 84.0 116 41.4
Migut.N03284 Erythranthe guttata HOM05D004006 ORTHO05D004585 3.8e-14 82.8 123 42.3
PSO170G2295 Papaver somniferum HOM05D004006 ORTHO05D004585 3.8e-14 82.8 145 39.3
SalBow6G7056 Salvia bowleyana HOM05D004006 ORTHO05D004585 6.5e-14 82.0 118 43.2
Nitab4.5_0000051g0220 Nicotiana tabacum HOM05D004006 ORTHO05D004585 8.6e-14 81.6 124 42.7
Lsat_1_v5_gn_5_101481 Lactuca sativa HOM05D004006 ORTHO05D004585 1.1e-13 81.3 110 42.7
RhsimUnG0092700 Rhododendron simsii HOM05D004006 ORTHO05D004585 4.2e-13 79.3 119 42.0
AL1G52380 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 3.6e-12 76.3 137 39.4
HanXRQChr04g0125261 Helianthus annuus HOM05D004006 ORTHO05D004585 3.6e-12 76.3 115 45.2
Phvul.008G163001 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 6.1e-12 75.5 84 51.2
ATR0584G004 Amborella trichopoda HOM05D004006 ORTHO05D004585 1.0e-11 74.7 107 39.3
Hund26811 Selenicereus undatus HOM05D004006 ORTHO05D004585 1.0e-11 74.7 131 42.0
THA.LOC104806821 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 1.8e-11 73.9 125 39.2
BcaC08g42859 Brassica carinata HOM05D004006 ORTHO05D004585 4.0e-11 72.8 143 39.2
C06p00700 Brassica napus HOM05D004006 ORTHO05D004585 4.0e-11 72.8 143 39.2
BolC6t35208H Brassica oleracea HOM05D004006 ORTHO05D004585 4.0e-11 72.8 143 39.2
MBI16_g07656_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 5.2e-11 72.4 98 45.9
A10p07490 Brassica napus HOM05D004006 ORTHO05D004585 8.8e-11 71.6 143 39.2
BraSC36t46058Z Brassica rapa HOM05D004006 ORTHO05D004585 8.8e-11 71.6 143 39.2
Thhalv10011817m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 8.8e-11 71.6 125 40.0
CARHR035970 Cardamine hirsuta HOM05D004006 ORTHO05D004585 1.5e-10 70.9 128 40.6
AT1G44608 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 2.0e-10 70.5 150 36.7
Os04g0690500 Oryza sativa ssp. japonica HOM05D004006 ORTHO05D004585 2.6e-10 70.1 113 39.8
VMungo0647G1885 Vigna mungo HOM05D004006 ORTHO05D004585 4.4e-10 69.3 84 46.4
Carub.0001s3524 Capsella rubella HOM05D004006 ORTHO05D004585 5.7e-10 68.9 139 33.8
HPP92_011945 Vanilla planifolia HOM05D004006 ORTHO05D004585 7.5e-10 68.6 138 36.2
DCAR_014087 Daucus carota HOM05D004006 ORTHO05D004585 1.3e-09 67.8 104 46.2
THA.LOC104817318 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 1.7e-09 67.4 126 37.3
unitig_46.g18107 Utricularia gibba HOM05D004006 ORTHO05D004585 6.3e-09 65.5 117 36.8
CDE12G0877 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 2.0e-07 60.5 108 38.9
Sp1g33590 Schrenkiella parvula HOM05D004006 ORTHO05D004585 1.0e-06 58.2 117 36.8
PSO017G3194 Papaver somniferum HOM05D004006 ORTHO05D004585 1.7e-06 57.4 124 34.7


User provided reference genes

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