Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc64.47 Carica papaya HOM05D003945 ORTHO05D004625 0.0e+00 1693.3 844 100.0
Duzib093G0983 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1437.2 833 86.6
Thecc.08G022100 Theobroma cacao HOM05D003945 ORTHO05D004625 0.0e+00 1428.3 839 85.5
QL02p007358 Quercus lobata HOM05D003945 ORTHO05D004625 0.0e+00 1427.5 838 85.1
Cfa018443 Carpinus fangiana HOM05D003945 ORTHO05D004625 0.0e+00 1425.2 838 85.7
Ciclev10000250m.g Citrus clementina HOM05D003945 ORTHO05D004625 0.0e+00 1424.5 821 86.4
Duzib116G0373 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1424.1 832 85.9
Potri.014G040800 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1423.7 838 85.4
CANSAT25G0653 Cannabis sativa HOM05D003945 ORTHO05D004625 0.0e+00 1422.5 827 85.4
CiPaw.15G072600 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1416.7 839 84.4
Duzib041G0798 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1415.6 833 85.0
Potri.002G133300 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1415.2 837 84.6
Psat5g018920 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1413.7 831 84.8
Haze_17624 Corylus avellana HOM05D003945 ORTHO05D004625 0.0e+00 1412.1 823 86.1
Glyma.14G077200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1412.1 837 83.9
GSVIVG01009647001 Vitis vinifera HOM05D003945 ORTHO05D004625 0.0e+00 1412.1 828 84.8
Gohir.A06G012000 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1407.1 824 85.8
arahy.Tifrunner.gnm1.ann1.6F7CQG Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1404.4 841 83.6
Gohir.D06G009400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1402.9 824 85.7
Gorai.010G012200 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1402.9 824 85.7
TWI56G0898 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1402.5 836 84.0
CsaV3_2G028440 Cucumis sativus L. HOM05D003945 ORTHO05D004625 0.0e+00 1400.2 824 84.7
Gorai.009G205100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1398.6 839 83.4
Lalb_Chr24g0399061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1394.8 820 84.5
Gohir.D05G199800 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1392.9 839 83.3
FvH4_2g40290 Fragaria vesca HOM05D003945 ORTHO05D004625 0.0e+00 1392.5 837 83.5
Prupe.1G383600 Prunus persica HOM05D003945 ORTHO05D004625 0.0e+00 1392.1 838 82.7
Manes.18G029900 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1391.3 812 85.2
Sed0018308 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1391.3 829 84.0
FAN27G0143 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1390.9 837 83.3
Manes.05G163500 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1390.2 837 83.3
THA.LOC104809128 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1388.6 828 84.1
AUR62033857 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1387.9 840 82.5
Glyma.06G034400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1387.9 837 83.6
Lj5g0000532 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1387.9 832 83.4
Gorai.009G274100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1385.5 833 83.2
FAN20G0651 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1383.6 837 82.8
CiPaw.16G054000 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1382.9 832 83.2
Gohir.D05G262200 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1382.9 833 83.1
Medtr3g111630 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1382.9 831 83.4
CSS0008782 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 0.0e+00 1381.7 829 83.2
THA.LOC104806880 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1379.4 833 82.7
RcHm_v2.0_Chr6g0300451 Rosa chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1377.8 837 82.9
Sed0019202 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1377.1 812 84.4
Lalb_Chr14g0369061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1376.7 820 84.1
VMungo0647G1838 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1376.7 809 84.7
arahy.Tifrunner.gnm1.ann1.SKM2GN Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1375.9 876 75.9
Aqoxy6G01012 Aquilegia oxysepala HOM05D003945 ORTHO05D004625 0.0e+00 1375.1 814 83.3
Sabra02G0104100 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1375.1 824 83.6
Glyma.04G034200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1374.4 837 82.8
FAN15G1095 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1374.0 844 82.2
Carub.0008s0641 Capsella rubella HOM05D003945 ORTHO05D004625 0.0e+00 1373.6 831 82.2
Sabra14G0029800 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1373.2 887 79.5
Phvul.009G055900 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1372.5 838 83.2
Thhalv10022547m.g Eutrema salsugineum HOM05D003945 ORTHO05D004625 0.0e+00 1371.7 817 82.9
Lalb_Chr22g0355401 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1370.1 821 83.6
AUR62041666 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1369.4 865 79.8
Nn5g29493 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1366.3 819 82.9
Lj4A44G44 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1365.9 810 84.2
Dinv39382 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1364.7 867 79.9
TAR381G0557 Trochodendron aralioides HOM05D003945 ORTHO05D004625 0.0e+00 1363.6 819 83.3
TPR.G12378 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1360.5 839 82.0
MD08G1036300 Malus domestica HOM05D003945 ORTHO05D004625 0.0e+00 1357.4 800 84.0
Gohir.A05G260400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1356.7 833 82.0
VMungo1309G1712 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1355.9 837 81.7
PSO675G7084 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1354.0 814 82.3
Lj1g0024333 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1352.4 837 81.4
MBI16_g13147_MAGBIO Magnolia biondii HOM05D003945 ORTHO05D004625 0.0e+00 1350.5 822 81.5
Aa31LG9G12670 Aethionema arabicum HOM05D003945 ORTHO05D004625 0.0e+00 1350.1 819 81.6
Actinidia22566 Actinidia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1349.7 827 81.6
PSO541G5148 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1349.7 814 82.2
PGR031G2694 Punica granatum HOM05D003945 ORTHO05D004625 0.0e+00 1347.4 813 83.0
EL10Ac1g01765 Beta vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1346.3 831 80.9
BcaC02g10772 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1346.3 816 82.7
C04p25260 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1346.3 816 82.7
BolC4t24032H Brassica oleracea HOM05D003945 ORTHO05D004625 0.0e+00 1346.3 816 82.7
TWI12G1285 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1346.3 823 83.0
BcaC06g31752 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1342.0 816 82.6
AL8G18650 Arabidopsis lyrata HOM05D003945 ORTHO05D004625 0.0e+00 1339.7 820 81.0
Cc10_g03360 Coffea canephora HOM05D003945 ORTHO05D004625 0.0e+00 1339.7 821 82.1
Psat6g032680 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1338.2 835 80.8
AT5G42620 Arabidopsis thaliana HOM05D003945 ORTHO05D004625 0.0e+00 1335.5 824 80.5
CARHR181510 Cardamine hirsuta HOM05D003945 ORTHO05D004625 0.0e+00 1330.9 813 81.2
Ah.11g043210 Amaranthus hybridus HOM05D003945 ORTHO05D004625 0.0e+00 1330.5 830 80.4
SalBow8G1011 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1328.2 818 81.9
PGSC0003DMG400016879 Solanum tuberosum HOM05D003945 ORTHO05D004625 0.0e+00 1328.2 818 81.1
Sp2g07000 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1326.6 816 81.1
SpUn0022_0010 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1326.6 816 81.1
SpUn0026_0070 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1326.6 816 81.1
SpUn0029_0030 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1326.6 816 81.1
ATR0733G077 Amborella trichopoda HOM05D003945 ORTHO05D004625 0.0e+00 1317.8 822 80.3
BraA06t27697Z Brassica rapa HOM05D003945 ORTHO05D004625 0.0e+00 1317.8 816 81.9
A06p48280 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1317.0 816 81.7
DCAR_012756 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1315.4 811 80.5
DCAR_019505 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1315.1 810 80.9
Lsat_1_v5_gn_1_18561 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1308.5 812 80.8
vmacro21611 Vaccinium macrocarpon HOM05D003945 ORTHO05D004625 0.0e+00 1308.1 829 80.2
Eucgr.A00488 Eucalyptus grandis HOM05D003945 ORTHO05D004625 0.0e+00 1307.7 812 81.4
MSTRG.24306 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1306.6 812 80.9
Atru.chr13.549 Acer truncatum HOM05D003945 ORTHO05D004625 0.0e+00 1304.7 871 78.1
Nn1g05109 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1303.1 813 79.8
Sopen04g033470 Solanum pennellii HOM05D003945 ORTHO05D004625 0.0e+00 1300.8 818 80.0
CAN.G371.130 Capsicum annuum HOM05D003945 ORTHO05D004625 0.0e+00 1300.0 818 79.7
MSTRG.1299 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1297.3 808 79.7
Oeu009604.1 Olea europaea HOM05D003945 ORTHO05D004625 0.0e+00 1297.0 852 78.1
HanXRQChr04g0104741 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1296.6 815 80.9
Solyc04g079900.3 Solanum lycopersicum HOM05D003945 ORTHO05D004625 0.0e+00 1296.6 818 79.7
Glyma.17G248400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1293.1 757 85.3
HanXRQChr00c0117g0571731 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1289.6 815 80.6
Nitab4.5_0000110g0200 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1289.6 811 79.9
Nitab4.5_0003588g0030 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1288.9 827 79.0
CDE07G1908 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1280.8 817 78.6
CDE04G0514 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1280.4 817 78.7
MELO3C010920.2 Cucumis melo HOM05D003945 ORTHO05D004625 0.0e+00 1276.2 865 74.7
Peaxi162Scf00057g01112 Petunia axillaris HOM05D003945 ORTHO05D004625 0.0e+00 1275.0 835 78.1
Gohir.A05G196700 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1274.2 839 77.2
Dinv36042 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1271.9 768 82.9
Os03g0731500 Oryza sativa ssp. japonica HOM05D003945 ORTHO05D004625 0.0e+00 1269.2 820 78.2
HanXRQChr09g0268441 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1266.9 813 78.2
Zm00001eb056220 Zea mays HOM05D003945 ORTHO05D004625 0.0e+00 1259.6 815 77.9
Ca_13337_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1259.2 833 77.6
Hund17646 Selenicereus undatus HOM05D003945 ORTHO05D004625 0.0e+00 1259.2 810 77.7
Medtr1g021950 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1258.8 808 78.5
ECA247G1056 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1257.7 820 78.4
Phvul.001G016500 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1255.7 711 87.2
ECA232G0159 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1252.7 815 79.0
SGA_v2.0_scaffold48G18049 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1247.6 825 73.2
Lj4C783T17 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1244.2 864 75.0
Sc02g0006540 Simmondsia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1244.2 755 82.8
Lsat_1_v5_gn_4_119740 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1235.7 821 77.1
Migut.C00687 Erythranthe guttata HOM05D003945 ORTHO05D004625 0.0e+00 1231.5 815 77.9
Ca_15527_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1222.6 822 77.6
SEGI_23274 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1221.8 817 75.4
SalBow8G4281 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1219.5 816 76.7
Mapoly0001s0355 Marchantia polymorpha HOM05D003945 ORTHO05D004625 0.0e+00 1201.8 815 73.1
SEGI_40605 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1190.3 820 73.0
TPR.G15756 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1188.7 763 76.8
SGA_v2.0_scaffold24G10266 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1188.3 871 70.7
Pp3c15_10300 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1175.2 813 72.6
Pp3c9_8900 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1159.8 818 71.3
Rhsim06G0036600 Rhododendron simsii HOM05D003945 ORTHO05D004625 0.0e+00 1144.4 731 80.6
Oeu019083.2 Olea europaea HOM05D003945 ORTHO05D004625 0.0e+00 1080.1 810 71.2
CSS0002441 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 5.5e-289 997.7 581 82.1
AagrBONN_evm.TU.Sc2ySwM_228.1369 Anthoceros agrestis HOM05D003945 ORTHO05D004625 4.3e-281 971.5 638 71.0
TAR625G1327 Trochodendron aralioides HOM05D003945 ORTHO05D004625 2.2e-277 959.1 814 64.9
COL.COLO4_26375 Corchorus olitorius HOM05D003945 ORTHO05D004625 4.9e-269 931.4 518 86.3
ClCG08G015350 Citrullus lanatus HOM05D003945 ORTHO05D004625 2.4e-268 929.1 550 86.4
SHI08218 Sapria himalayana HOM05D003945 ORTHO05D004625 3.9e-266 921.8 579 76.5
TAR625G0556 Trochodendron aralioides HOM05D003945 ORTHO05D004625 2.0e-198 696.8 717 55.5
unitig_899.g15618 Utricularia gibba HOM05D003945 ORTHO05D004625 6.8e-154 548.9 461 60.5
Actinidia15303 Actinidia chinensis HOM05D003945 ORTHO05D004625 2.1e-139 500.7 311 78.1
Actinidia15302 Actinidia chinensis HOM05D003945 ORTHO05D004625 1.4e-138 498.0 354 78.0
unitig_899.g15619 Utricularia gibba HOM05D003945 ORTHO05D004625 8.7e-109 399.1 317 71.6
TAR625G0675 Trochodendron aralioides HOM05D003945 ORTHO05D004625 1.9e-103 381.3 397 54.7
HanXRQChr02g0037151 Helianthus annuus HOM05D003945 ORTHO05D004625 3.3e-100 370.5 261 70.5
TAR625G1534 Trochodendron aralioides HOM05D003945 ORTHO05D004625 4.2e-95 353.6 581 46.6
arahy.Tifrunner.gnm1.ann1.URD35Y Arachis hypogaea HOM05D003945 ORTHO05D004625 2.2e-67 261.5 152 82.9
Pp3c1_5980 Physcomitrium patens HOM05D003945 ORTHO05D004625 1.2e-60 239.2 156 78.2
SGA_v2.0_scaffold18G08518 Striga asiatica HOM05D003945 ORTHO05D004625 2.3e-45 188.3 163 58.3
CBR_g2789 Chara braunii HOM05D003945 ORTHO05D004625 9.5e-39 166.4 517 30.0
PRCOL_00006675 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 5.4e-34 150.6 462 29.2
DCAR_031552 Daucus carota HOM05D003945 ORTHO05D004625 1.5e-31 142.5 76 86.8
PRCOL_00003766 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 4.0e-29 134.4 475 27.4
TAR625G0971 Trochodendron aralioides HOM05D003945 ORTHO05D004625 5.8e-28 130.6 100 60.0
CiPaw.15G072700 Carya illinoinensis HOM05D003945 ORTHO05D004625 2.9e-27 128.3 68 89.7
PRCOL_00001495 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 6.4e-27 127.1 472 27.8
Cre01.g001400 Chlamydomonas reinhardtii HOM05D003945 ORTHO05D004625 1.2e-25 122.9 441 26.8
Pp3c1_5940 Physcomitrium patens HOM05D003945 ORTHO05D004625 2.1e-25 122.1 96 66.7
TPR.G27891 Trifolium pratense HOM05D003945 ORTHO05D004625 1.5e-20 105.9 74 70.3
SGA_v2.0_scaffold210G42079 Striga asiatica HOM05D003945 ORTHO05D004625 6.0e-17 94.0 163 36.8
CBR_g38919 Chara braunii HOM05D000019 ORTHO05D000353 8.7e-16 90.1 220 31.8
CBR_g32472 Chara braunii HOM05D000019 ORTHO05D000002 2.5e-15 88.6 266 27.8
arahy.Tifrunner.gnm1.ann1.4NEG3Q Arachis hypogaea HOM05D003945 ORTHO05D004625 2.1e-14 85.5 83 51.8
CBR_g38920 Chara braunii HOM05D003945 ORTHO05D004625 1.3e-08 66.2 138 31.9
CBR_g37162 Chara braunii HOM05D000019 ORTHO05D000048 5.1e-08 64.3 102 39.2
Lsat_1_v5_gn_5_96440 Lactuca sativa HOM05D003945 ORTHO05D004625 9.6e-07 60.1 38 76.3


User provided reference genes

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