Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc64.17 Carica papaya HOM05D004388 ORTHO05D005106 1.9e-57 225.7 123 100.0
ClCG02G005540 Citrullus lanatus HOM05D004388 ORTHO05D005106 6.0e-35 151.0 127 69.3
GSVIVG01009587001 Vitis vinifera HOM05D004388 ORTHO05D005106 8.7e-34 147.1 125 69.6
TAR376G0986 Trochodendron aralioides HOM05D004388 ORTHO05D005106 1.1e-33 146.7 129 68.2
MELO3C018419.2 Cucumis melo HOM05D004388 ORTHO05D005106 2.5e-33 145.6 128 69.5
Nn6g32144 Nelumbo nucifera HOM05D004388 ORTHO05D005106 3.3e-33 145.2 133 68.4
Gohir.D02G236000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 4.3e-33 144.8 128 71.1
Gorai.005G264100 Gossypium raimondii HOM05D004388 ORTHO05D005106 4.3e-33 144.8 128 71.1
Thecc.02G028000 Theobroma cacao HOM05D004388 ORTHO05D005106 5.6e-33 144.4 123 65.9
COL.COLO4_26416 Corchorus olitorius HOM05D004388 ORTHO05D005106 7.4e-33 144.1 128 67.2
CiPaw.16G051700 Carya illinoinensis HOM05D004388 ORTHO05D005106 9.6e-33 143.7 124 69.4
CsaV3_7G010090 Cucumis sativus L. HOM05D004388 ORTHO05D005106 9.6e-33 143.7 128 68.8
Gohir.A03G214500 Gossypium hirsutum HOM05D004388 ORTHO05D005106 1.3e-32 143.3 128 70.3
Ah.09g229630 Amaranthus hybridus HOM05D004388 ORTHO05D005106 1.6e-32 142.9 124 69.4
CiPaw.05G058500 Carya illinoinensis HOM05D004388 ORTHO05D005106 6.2e-32 141.0 122 71.3
Nn5g29406 Nelumbo nucifera HOM05D004388 ORTHO05D005106 8.2e-32 140.6 131 66.4
Thecc.08G017000 Theobroma cacao HOM05D004388 ORTHO05D005106 1.8e-31 139.4 128 65.6
TWI56G1138 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 2.4e-31 139.0 128 65.6
EL10Ac1g01755 Beta vulgaris HOM05D004388 ORTHO05D005106 3.1e-31 138.7 128 67.2
CSS0016442 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 6.9e-31 137.5 124 66.1
CSS0020304 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 6.9e-31 137.5 124 66.1
Duzib052G1120 Durio zibethinus HOM05D004388 ORTHO05D005106 6.9e-31 137.5 126 65.9
ECA236G2461 Erigeron canadensis HOM05D004388 ORTHO05D005106 6.9e-31 137.5 128 61.7
Prupe.8G112900 Prunus persica HOM05D004388 ORTHO05D005106 6.9e-31 137.5 124 66.1
Gorai.002G214600 Gossypium raimondii HOM05D004388 ORTHO05D005106 1.2e-30 136.7 123 66.7
Cfa004944 Carpinus fangiana HOM05D004388 ORTHO05D005106 1.5e-30 136.3 101 76.2
FvH4_7g04430 Fragaria vesca HOM05D004388 ORTHO05D005106 1.5e-30 136.3 126 64.3
FAN06G3575 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.5e-30 136.3 126 64.3
Manes.15G145400 Manihot esculenta HOM05D004388 ORTHO05D005106 2.0e-30 136.0 127 66.1
RcHm_v2.0_Chr3g0487591 Rosa chinensis HOM05D004388 ORTHO05D005106 2.0e-30 136.0 126 64.3
Sp4g07480 Schrenkiella parvula HOM05D004388 ORTHO05D005106 2.0e-30 136.0 124 66.1
FAN06G4461 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.6e-30 135.6 126 64.3
PGR042G3241 Punica granatum HOM05D004388 ORTHO05D005106 2.6e-30 135.6 124 68.5
Gohir.D01G173000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 3.4e-30 135.2 123 65.9
MBI16_g31481_MAGBIO Magnolia biondii HOM05D004388 ORTHO05D005106 3.4e-30 135.2 128 64.1
Peaxi162Scf00684g00563 Petunia axillaris HOM05D004388 ORTHO05D005106 3.4e-30 135.2 122 66.4
Potri.009G108700 Populus trichocarpa HOM05D004388 ORTHO05D005106 3.4e-30 135.2 126 65.1
Sed0011034 Sechium edule HOM05D004388 ORTHO05D005106 3.4e-30 135.2 126 62.7
FAN10G0172 Fragaria x ananassa HOM05D004388 ORTHO05D005106 4.5e-30 134.8 126 65.1
QL03p018404 Quercus lobata HOM05D004388 ORTHO05D005106 4.5e-30 134.8 122 66.4
Sabra09G0082900 Salix brachista HOM05D004388 ORTHO05D005106 4.5e-30 134.8 126 66.7
FAN26G1198 Fragaria x ananassa HOM05D004388 ORTHO05D005106 5.8e-30 134.4 125 66.4
FAN28G0470 Fragaria x ananassa HOM05D004388 ORTHO05D005106 5.8e-30 134.4 125 66.4
Manes.05G168800 Manihot esculenta HOM05D004388 ORTHO05D005106 5.8e-30 134.4 128 63.3
FvH4_1g27200 Fragaria vesca HOM05D004388 ORTHO05D005106 7.6e-30 134.0 125 65.6
Gohir.A01G181900 Gossypium hirsutum HOM05D004388 ORTHO05D005106 7.6e-30 134.0 122 64.8
FAN27G3490 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.0e-29 133.7 125 64.8
Hma1.2p1_1527F.1_g289065 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 1.0e-29 133.7 126 65.1
AUR62040093 Chenopodium quinoa HOM05D004388 ORTHO05D005106 1.3e-29 133.3 126 64.3
FAN03G2535 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.3e-29 133.3 125 64.0
THA.LOC104803691 Tarenaya hassleriana HOM05D004388 ORTHO05D005106 1.3e-29 133.3 126 64.3
AUR62033874 Chenopodium quinoa HOM05D004388 ORTHO05D005106 1.7e-29 132.9 124 64.5
QL11p039202 Quercus lobata HOM05D004388 ORTHO05D005106 1.7e-29 132.9 122 64.8
CANSAT25G3863 Cannabis sativa HOM05D004388 ORTHO05D005106 2.2e-29 132.5 125 61.6
Dinv36015 Davidia involucrata HOM05D004388 ORTHO05D005106 2.2e-29 132.5 127 63.0
Thhalv10001257m.g Eutrema salsugineum HOM05D004388 ORTHO05D005106 2.9e-29 132.1 124 63.7
FvH4_2g07330 Fragaria vesca HOM05D004388 ORTHO05D005106 2.9e-29 132.1 125 64.0
FAN19G2330 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.9e-29 132.1 125 64.8
FAN24G3543 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.9e-29 132.1 125 64.0
FAN23G2994 Fragaria x ananassa HOM05D004388 ORTHO05D005106 3.8e-29 131.7 125 65.6
Glyma.07G163600 Glycine max HOM05D004388 ORTHO05D005106 3.8e-29 131.7 128 64.8
TAR625G0696 Trochodendron aralioides HOM05D004388 ORTHO05D005106 3.8e-29 131.7 128 63.3
BcaC07g40816 Brassica carinata HOM05D004388 ORTHO05D005106 4.9e-29 131.3 124 66.1
C08p38090 Brassica napus HOM05D004388 ORTHO05D005106 4.9e-29 131.3 124 66.1
BolC8t51384H Brassica oleracea HOM05D004388 ORTHO05D005106 4.9e-29 131.3 124 66.1
Carub.0004s0666 Capsella rubella HOM05D004388 ORTHO05D005106 4.9e-29 131.3 122 63.1
COL.COLO4_17768 Corchorus olitorius HOM05D004388 ORTHO05D005106 4.9e-29 131.3 122 62.3
Duzib248G0675 Durio zibethinus HOM05D004388 ORTHO05D005106 4.9e-29 131.3 122 66.4
Hma1.2p1_0584F.1_g183220 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 4.9e-29 131.3 128 62.5
Oeu034076.1 Olea europaea HOM05D004388 ORTHO05D005106 4.9e-29 131.3 125 62.4
AL4G19340 Arabidopsis lyrata HOM05D004388 ORTHO05D005106 6.5e-29 131.0 122 63.1
A09p55160 Brassica napus HOM05D004388 ORTHO05D005106 6.5e-29 131.0 124 66.1
BraA09t40924Z Brassica rapa HOM05D004388 ORTHO05D005106 6.5e-29 131.0 124 66.1
FAN15G0910 Fragaria x ananassa HOM05D004388 ORTHO05D005106 6.5e-29 131.0 125 64.0
FAN28G0922 Fragaria x ananassa HOM05D004388 ORTHO05D005106 6.5e-29 131.0 125 64.8
arahy.Tifrunner.gnm1.ann1.2I4SWN Arachis hypogaea HOM05D004388 ORTHO05D005106 8.4e-29 130.6 130 61.5
Cc02_g18220 Coffea canephora HOM05D004388 ORTHO05D005106 8.4e-29 130.6 128 64.1
DCAR_001610 Daucus carota HOM05D004388 ORTHO05D005106 1.1e-28 130.2 129 65.1
VMungo1309G1869 Vigna mungo HOM05D004388 ORTHO05D005106 1.1e-28 130.2 126 61.9
AT2G26500 Arabidopsis thaliana HOM05D004388 ORTHO05D005106 1.4e-28 129.8 122 62.3
Phvul.009G061900 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 1.4e-28 129.8 129 62.8
CSS0032006 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 1.9e-28 129.4 106 68.9
CARHR118500 Cardamine hirsuta HOM05D004388 ORTHO05D005106 2.5e-28 129.0 126 64.3
Ciclev10030439m.g Citrus clementina HOM05D004388 ORTHO05D005106 2.5e-28 129.0 128 62.5
Glyma.06G035900 Glycine max HOM05D004388 ORTHO05D005106 4.2e-28 128.3 126 63.5
Gorai.010G015700 Gossypium raimondii HOM05D004388 ORTHO05D005106 4.2e-28 128.3 126 62.7
Lalb_Chr11g0062471 Lupinus albus HOM05D004388 ORTHO05D005106 5.5e-28 127.9 126 59.5
PSO170G0356 Papaver somniferum HOM05D004388 ORTHO05D005106 5.5e-28 127.9 125 60.8
Eucgr.G01518 Eucalyptus grandis HOM05D004388 ORTHO05D005106 7.1e-28 127.5 125 61.6
Duzib248G0127 Durio zibethinus HOM05D004388 ORTHO05D005106 9.3e-28 127.1 126 63.5
Potri.014G037000 Populus trichocarpa HOM05D004388 ORTHO05D005106 9.3e-28 127.1 128 62.5
Sc15g0006590 Simmondsia chinensis HOM05D004388 ORTHO05D005106 9.3e-28 127.1 128 62.5
Cfa018482 Carpinus fangiana HOM05D004388 ORTHO05D005106 1.2e-27 126.7 126 63.5
Duzib132G0841 Durio zibethinus HOM05D004388 ORTHO05D005106 1.2e-27 126.7 128 63.3
Glyma.04G035900 Glycine max HOM05D004388 ORTHO05D005106 1.2e-27 126.7 124 60.5
Atru.BG.71.p Acer truncatum HOM05D004388 ORTHO05D005106 1.6e-27 126.3 95 71.6
Medtr1g034260 Medicago truncatula HOM05D004388 ORTHO05D005106 1.6e-27 126.3 123 61.8
Duzib248G1645 Durio zibethinus HOM05D004388 ORTHO05D005106 2.7e-27 125.6 126 61.9
Potri.004G147300 Populus trichocarpa HOM05D004388 ORTHO05D005106 2.7e-27 125.6 126 62.7
Lsat_1_v5_gn_7_88020 Lactuca sativa HOM05D004388 ORTHO05D005106 3.5e-27 125.2 126 58.7
Aa31LG5G9370 Aethionema arabicum HOM05D004388 ORTHO05D005106 4.6e-27 124.8 126 65.1
Peaxi162Scf00016g01338 Petunia axillaris HOM05D004388 ORTHO05D005106 4.6e-27 124.8 116 63.8
Lalb_Chr08g0245721 Lupinus albus HOM05D004388 ORTHO05D005106 6.0e-27 124.4 126 57.9
DCAR_000094 Daucus carota HOM05D004388 ORTHO05D005106 7.9e-27 124.0 117 63.2
DCAR_029046 Daucus carota HOM05D004388 ORTHO05D005106 7.9e-27 124.0 117 63.2
PSO541G0781 Papaver somniferum HOM05D004388 ORTHO05D005106 7.9e-27 124.0 121 60.3
Glyma.20G008600 Glycine max HOM05D004388 ORTHO05D005106 1.3e-26 123.2 128 60.2
Aqoxy6G00936 Aquilegia oxysepala HOM05D004388 ORTHO05D005106 2.3e-26 122.5 118 60.2
Ca_12477_v3 Cicer arietinum L. HOM05D004388 ORTHO05D005106 2.3e-26 122.5 126 57.9
MSTRG.20123 Avicennia marina HOM05D004388 ORTHO05D005106 3.0e-26 122.1 118 61.0
HanXRQChr16g0506081 Helianthus annuus HOM05D004388 ORTHO05D005106 3.9e-26 121.7 124 58.1
BcaB01g03018 Brassica carinata HOM05D004388 ORTHO05D005106 5.1e-26 121.3 124 63.7
Lalb_Chr01g0003011 Lupinus albus HOM05D004388 ORTHO05D005106 5.1e-26 121.3 104 68.3
HanXRQChr04g0128391 Helianthus annuus HOM05D004388 ORTHO05D005106 6.7e-26 120.9 123 56.9
Sabra14G0026600 Salix brachista HOM05D004388 ORTHO05D005106 6.7e-26 120.9 128 60.9
TWI12G0249 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 6.7e-26 120.9 131 61.1
FAN20G1062 Fragaria x ananassa HOM05D004388 ORTHO05D005106 8.7e-26 120.6 99 69.7
Nitab4.5_0001401g0180 Nicotiana tabacum HOM05D004388 ORTHO05D005106 8.7e-26 120.6 121 61.2
MD05G1072400 Malus domestica HOM05D004388 ORTHO05D005106 1.1e-25 120.2 126 58.7
Nitab4.5_0008194g0060 Nicotiana tabacum HOM05D004388 ORTHO05D005106 1.5e-25 119.8 121 60.3
VMungo1215G1405 Vigna mungo HOM05D004388 ORTHO05D005106 1.5e-25 119.8 123 61.8
CAN.G322.84 Capsicum annuum HOM05D004388 ORTHO05D005106 3.3e-25 118.6 125 58.4
Phvul.003G011200 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 4.3e-25 118.2 122 60.7
Lalb_Chr10g0095391 Lupinus albus HOM05D004388 ORTHO05D005106 7.4e-25 117.5 122 62.3
PGSC0003DMG400006208 Solanum tuberosum HOM05D004388 ORTHO05D005106 7.4e-25 117.5 126 57.9
Sopen10g022090 Solanum pennellii HOM05D004388 ORTHO05D005106 1.3e-24 116.7 127 56.7
TWI36G1636 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 1.3e-24 116.7 133 56.4
SalBow6G5992 Salvia bowleyana HOM05D004388 ORTHO05D005106 1.6e-24 116.3 120 57.5
arahy.Tifrunner.gnm1.ann1.RG9LRA Arachis hypogaea HOM05D004388 ORTHO05D005106 2.2e-24 115.9 124 57.3
ATR0733G197 Amborella trichopoda HOM05D004388 ORTHO05D005106 2.8e-24 115.5 126 57.9
Sopen01g051240 Solanum pennellii HOM05D004388 ORTHO05D005106 2.8e-24 115.5 103 63.1
Solyc01g109040.4 Solanum lycopersicum HOM05D004388 ORTHO05D005106 4.8e-24 114.8 125 57.6
PGSC0003DMG402025831 Solanum tuberosum HOM05D004388 ORTHO05D005106 1.1e-23 113.6 124 56.5
Migut.B00292 Erythranthe guttata HOM05D004388 ORTHO05D005106 1.8e-23 112.8 116 57.8
MD10G1086700 Malus domestica HOM05D004388 ORTHO05D005106 1.8e-23 112.8 99 66.7
Lj1g0026402 Lotus japonicus HOM05D004388 ORTHO05D005106 4.1e-23 111.7 129 55.0
Eucgr.I01216 Eucalyptus grandis HOM05D004388 ORTHO05D005106 6.9e-23 110.9 108 58.3
Actinidia00479 Actinidia chinensis HOM05D000395 ORTHO05D005106 1.5e-22 109.8 127 55.9
arahy.Tifrunner.gnm1.ann1.ISKM3Z Arachis hypogaea HOM05D004388 ORTHO05D005106 2.0e-22 109.4 126 56.3
Psat6g097040 Pisum sativum HOM05D004388 ORTHO05D005106 4.5e-22 108.2 126 54.8
HPP92_017776 Vanilla planifolia HOM05D004388 ORTHO05D005106 7.6e-22 107.5 128 57.8
Os03g0765900 Oryza sativa ssp. japonica HOM05D004388 ORTHO05D005106 1.0e-21 107.1 104 57.7
unitig_21.g20762 Utricularia gibba HOM05D004388 ORTHO05D005106 5.0e-21 104.8 95 62.1
unitig_0.g849 Utricularia gibba HOM05D004388 ORTHO05D005106 5.5e-20 101.3 119 50.4
unitig_744.g24243 Utricularia gibba HOM05D004388 ORTHO05D005106 3.0e-18 95.5 104 54.8
SGA_v2.0_scaffold58G20597 Striga asiatica HOM05D004388 ORTHO05D005106 8.8e-18 94.0 127 47.2
Potri.002G130000 Populus trichocarpa HOM05D004388 ORTHO05D005106 3.3e-17 92.0 106 54.7
Zm00001eb214080 Zea mays HOM05D004388 ORTHO05D005106 1.3e-16 90.1 118 48.3
Pp3c6_20300 Physcomitrium patens HOM05D004388 ORTHO05D005106 1.7e-16 89.7 123 47.2
Zm00001eb058590 Zea mays HOM05D004388 ORTHO05D005106 2.2e-16 89.4 123 47.2
Rhsim05G0079000 Rhododendron simsii HOM05D004388 ORTHO05D005106 2.8e-16 89.0 130 52.3
Pp3c5_10730 Physcomitrium patens HOM05D004388 ORTHO05D005106 1.1e-15 87.0 123 43.1
AagrBONN_evm.TU.Sc2ySwM_228.5818 Anthoceros agrestis HOM05D004388 ORTHO05D005106 1.8e-15 86.3 132 43.2
TPR.G40836 Trifolium pratense HOM05D004388 ORTHO05D005106 1.8e-15 86.3 73 67.1
BcaB08g35304 Brassica carinata HOM05D004388 ORTHO05D005106 2.6e-14 82.4 53 86.8
CDE01G0191 Ceratophyllum demersum HOM05D004388 ORTHO05D005106 7.7e-14 80.9 56 80.4
Mapoly0043s0110 Marchantia polymorpha HOM05D004388 ORTHO05D005106 1.1e-12 77.0 123 44.7
SMO361G0239 Selaginella moellendorffii HOM05D004388 ORTHO05D005106 1.9e-12 76.3 115 41.7
Oeu010570.1 Olea europaea HOM05D000395 ORTHO05D000088 9.4e-12 73.9 82 54.9
CBR_g48936 Chara braunii HOM05D004388 ORTHO05D005106 1.6e-11 73.2 90 46.7
GSVIVG01031853001 Vitis vinifera HOM05D008110 ORTHO05D005106 2.2e-08 62.8 72 51.4
Psat4g068600 Pisum sativum HOM05D004388 ORTHO05D005106 3.7e-08 62.0 105 43.8


User provided reference genes

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