Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc64.169 Carica papaya HOM05D003077 ORTHO05D003354 3.7e-88 328.2 167 100.0
Duzib093G0755 Durio zibethinus HOM05D003077 ORTHO05D003354 3.0e-61 238.8 155 76.8
Thecc.08G132900 Theobroma cacao HOM05D003077 ORTHO05D003354 3.0e-61 238.8 162 75.3
Dinv14687 Davidia involucrata HOM05D003077 ORTHO05D003354 6.7e-61 237.7 166 74.1
Cfa018128 Carpinus fangiana HOM05D003077 ORTHO05D003354 7.4e-60 234.2 168 75.0
Gohir.D02G078300 Gossypium hirsutum HOM05D003077 ORTHO05D003354 9.6e-60 233.8 164 73.8
Gorai.005G087800 Gossypium raimondii HOM05D003077 ORTHO05D003354 9.6e-60 233.8 164 73.8
Sp1g19140 Schrenkiella parvula HOM05D003077 ORTHO05D003354 4.8e-59 231.5 159 72.3
THA.LOC104813681 Tarenaya hassleriana HOM05D003077 ORTHO05D003354 6.2e-59 231.1 167 75.4
Gohir.A02G110500 Gossypium hirsutum HOM05D003077 ORTHO05D003354 8.1e-59 230.7 173 69.4
Gohir.A02G071200 Gossypium hirsutum HOM05D003077 ORTHO05D003354 1.1e-58 230.3 164 73.2
Gohir.D03G069004 Gossypium hirsutum HOM05D003077 ORTHO05D003354 1.1e-58 230.3 176 69.3
Gorai.013G107800 Gossypium raimondii HOM05D003077 ORTHO05D003354 1.1e-58 230.3 169 72.2
CiPaw.16G022800 Carya illinoinensis HOM05D003077 ORTHO05D003354 1.4e-58 229.9 168 74.4
AT1G21610 Arabidopsis thaliana HOM05D003077 ORTHO05D003354 1.8e-58 229.6 164 71.3
Carub.0001s2104 Capsella rubella HOM05D003077 ORTHO05D003354 1.8e-58 229.6 167 71.3
Aa31LG4G7340 Aethionema arabicum HOM05D003077 ORTHO05D003354 2.4e-58 229.2 167 70.1
Sp5g32490 Schrenkiella parvula HOM05D003077 ORTHO05D003354 2.4e-58 229.2 167 70.7
AL1G34750 Arabidopsis lyrata HOM05D003077 ORTHO05D003354 6.9e-58 227.6 167 70.1
COL.COLO4_08846 Corchorus olitorius HOM05D003077 ORTHO05D003354 9.0e-58 227.3 162 73.5
Thhalv10018217m.g Eutrema salsugineum HOM05D003077 ORTHO05D003354 1.2e-57 226.9 167 70.7
Manes.02G168300 Manihot esculenta HOM05D003077 ORTHO05D003354 2.6e-57 225.7 166 72.9
Potri.002G078800 Populus trichocarpa HOM05D003077 ORTHO05D003354 2.6e-57 225.7 169 71.0
CARHR021970 Cardamine hirsuta HOM05D003077 ORTHO05D003354 4.5e-57 224.9 167 70.1
Sabra05G0138200 Salix brachista HOM05D003077 ORTHO05D003354 5.8e-57 224.6 166 71.1
Aa31LG7G5590 Aethionema arabicum HOM05D003077 ORTHO05D003354 4.9e-56 221.5 167 71.9
Sabra02G0061700 Salix brachista HOM05D003077 ORTHO05D003354 1.1e-55 220.3 152 74.3
Prupe.1G489600 Prunus persica HOM05D003077 ORTHO05D003354 1.4e-55 219.9 170 71.8
Potri.005G182300 Populus trichocarpa HOM05D003077 ORTHO05D003354 1.6e-54 216.5 171 68.4
Manes.18G082300 Manihot esculenta HOM05D003077 ORTHO05D003354 2.7e-54 215.7 165 69.7
Actinidia15214 Actinidia chinensis HOM05D003077 ORTHO05D003354 4.6e-54 214.9 156 69.9
CiPaw.15G031400 Carya illinoinensis HOM05D003077 ORTHO05D003354 4.6e-54 214.9 144 77.8
Ciclev10000343m.g Citrus clementina HOM05D003077 ORTHO05D003354 4.6e-54 214.9 168 67.9
THA.LOC104812084 Tarenaya hassleriana HOM05D003077 ORTHO05D003354 4.6e-54 214.9 177 68.9
C06p51470 Brassica napus HOM05D003077 ORTHO05D003354 6.0e-54 214.5 168 66.7
BolC6t40165H Brassica oleracea HOM05D003077 ORTHO05D003354 6.0e-54 214.5 168 66.7
BraA07t31806Z Brassica rapa HOM05D003077 ORTHO05D003354 6.0e-54 214.5 168 66.7
A07p42850 Brassica napus HOM05D003077 ORTHO05D003354 1.3e-53 213.4 168 66.7
Rhsim11G0071700 Rhododendron simsii HOM05D003077 ORTHO05D003354 1.3e-53 213.4 149 73.8
TWI34G0175 Tripterygium wilfordii HOM05D003077 ORTHO05D003354 1.8e-53 213.0 153 71.2
CsaV3_6G034070 Cucumis sativus L. HOM05D003077 ORTHO05D003354 3.9e-53 211.8 173 64.7
Atru.chr13.1565 Acer truncatum HOM05D003077 ORTHO05D003354 6.7e-53 211.1 169 66.9
MD08G1159200 Malus domestica HOM05D003077 ORTHO05D003354 8.7e-53 210.7 174 69.0
GSVIVG01008808001 Vitis vinifera HOM05D003077 ORTHO05D003354 8.7e-53 210.7 152 71.7
MELO3C010653.2 Cucumis melo HOM05D003077 ORTHO05D003354 1.1e-52 210.3 160 67.5
Actinidia21280 Actinidia chinensis HOM05D003077 ORTHO05D003354 1.9e-52 209.5 166 66.9
ClCG08G006020 Citrullus lanatus HOM05D003077 ORTHO05D003354 1.9e-52 209.5 173 64.7
Phvul.001G070500 Phaseolus vulgaris HOM05D003077 ORTHO05D003354 3.3e-52 208.8 165 69.1
BcaC08g47619 Brassica carinata HOM05D003077 ORTHO05D003354 5.6e-52 208.0 163 66.9
A07p28050 Brassica napus HOM05D003077 ORTHO05D003354 7.4e-52 207.6 166 65.1
BraA07t30449Z Brassica rapa HOM05D003077 ORTHO05D003354 7.4e-52 207.6 166 65.1
Sed0016256 Sechium edule HOM05D003077 ORTHO05D003354 4.8e-51 204.9 173 65.3
TWI32G1117 Tripterygium wilfordii HOM05D003077 ORTHO05D003354 4.8e-51 204.9 153 70.6
BolC6t38271H Brassica oleracea HOM05D003077 ORTHO05D003354 6.2e-51 204.5 152 67.8
CANSAT25G3561 Cannabis sativa HOM05D003077 ORTHO05D003354 6.2e-51 204.5 170 67.6
Glyma.14G154900 Glycine max HOM05D003077 ORTHO05D003354 8.2e-51 204.1 161 70.2
TAR625G0294 Trochodendron aralioides HOM05D003077 ORTHO05D003354 8.2e-51 204.1 169 65.1
C06p31320 Brassica napus HOM05D003077 ORTHO05D003354 1.8e-50 203.0 153 66.7
FAN15G0848 Fragaria x ananassa HOM05D003077 ORTHO05D003354 1.8e-50 203.0 155 69.7
Sc15g0007510 Simmondsia chinensis HOM05D003077 ORTHO05D003354 2.4e-50 202.6 168 66.1
BcaB02g07101 Brassica carinata HOM05D003077 ORTHO05D003354 4.0e-50 201.8 151 67.5
BcaC08g45481 Brassica carinata HOM05D003077 ORTHO05D003354 4.0e-50 201.8 151 67.5
FAN20G3132 Fragaria x ananassa HOM05D003077 ORTHO05D003354 4.0e-50 201.8 144 75.0
vmacro00865 Vaccinium macrocarpon HOM05D003077 ORTHO05D003354 1.5e-49 199.9 176 61.9
Hma1.2p1_0014F.1_g010220 Hydrangea macrophylla HOM05D003077 ORTHO05D003354 2.0e-49 199.5 169 65.1
C02p34450 Brassica napus HOM05D003077 ORTHO05D003354 2.6e-49 199.1 167 64.7
FvH4_2g27830 Fragaria vesca HOM05D003077 ORTHO05D003354 3.4e-49 198.7 159 67.3
FAN24G2697 Fragaria x ananassa HOM05D003077 ORTHO05D003354 3.4e-49 198.7 159 67.3
BraA02t07140Z Brassica rapa HOM05D003077 ORTHO05D003354 4.5e-49 198.4 154 68.2
BcaB05g25039 Brassica carinata HOM05D003077 ORTHO05D003354 5.8e-49 198.0 169 63.3
VMungo0647G0503 Vigna mungo HOM05D003077 ORTHO05D003354 5.8e-49 198.0 165 66.1
Glyma.13G032500 Glycine max HOM05D003077 ORTHO05D003354 1.0e-48 197.2 144 73.6
SHI09202 Sapria himalayana HOM05D003077 ORTHO05D003354 1.0e-48 197.2 168 64.3
Nn1g08962 Nelumbo nucifera HOM05D003077 ORTHO05D003354 1.7e-48 196.4 134 75.4
Nn5g28434 Nelumbo nucifera HOM05D003077 ORTHO05D003354 2.2e-48 196.1 161 65.8
BcaC03g15730 Brassica carinata HOM05D003077 ORTHO05D003354 3.8e-48 195.3 167 64.1
BolC2t09477H Brassica oleracea HOM05D003077 ORTHO05D003354 3.8e-48 195.3 167 64.1
DCAR_014371 Daucus carota HOM05D003077 ORTHO05D003354 3.8e-48 195.3 162 63.0
FAN27G2585 Fragaria x ananassa HOM05D003077 ORTHO05D003354 4.9e-48 194.9 162 66.0
Sc02g0004730 Simmondsia chinensis HOM05D003077 ORTHO05D003354 4.9e-48 194.9 158 65.8
CSS0035070 Camellia sinensis var. sinensis HOM05D003077 ORTHO05D003354 8.4e-48 194.1 172 62.8
A02p21210 Brassica napus HOM05D003077 ORTHO05D003354 1.1e-47 193.7 146 68.5
AL2G37510 Arabidopsis lyrata HOM05D003077 ORTHO05D003354 1.4e-47 193.4 166 62.7
PGR042G0595 Punica granatum HOM05D003077 ORTHO05D003354 1.4e-47 193.4 170 64.7
Solyc11g005130.2 Solanum lycopersicum HOM05D003077 ORTHO05D003354 2.5e-47 192.6 170 61.8
Sopen11g001130 Solanum pennellii HOM05D003077 ORTHO05D003354 2.5e-47 192.6 170 61.8
TAR628G1099 Trochodendron aralioides HOM05D003077 ORTHO05D003354 2.5e-47 192.6 177 61.0
Glyma.06G117400 Glycine max HOM05D003077 ORTHO05D003354 5.5e-47 191.4 142 71.1
Lalb_Chr10g0101491 Lupinus albus HOM05D003077 ORTHO05D003354 5.5e-47 191.4 172 63.4
Aqoxy5G02381 Aquilegia oxysepala HOM05D003077 ORTHO05D003354 2.1e-46 189.5 156 62.8
Ca_12646_v3 Cicer arietinum L. HOM05D003077 ORTHO05D003354 2.7e-46 189.1 167 64.1
AT1G77310 Arabidopsis thaliana HOM05D003077 ORTHO05D003354 2.3e-45 186.0 167 61.1
Glyma.04G245700 Glycine max HOM05D003077 ORTHO05D003354 3.0e-45 185.7 151 65.6
VMungo1309G2236 Vigna mungo HOM05D003077 ORTHO05D003354 3.0e-45 185.7 160 61.2
Carub.0002s2419 Capsella rubella HOM05D003077 ORTHO05D003354 6.7e-45 184.5 167 58.7
Phvul.009G129800 Phaseolus vulgaris HOM05D003077 ORTHO05D003354 1.1e-44 183.7 151 64.2
arahy.Tifrunner.gnm1.ann1.PT3H3P Arachis hypogaea HOM05D003077 ORTHO05D003354 1.9e-44 183.0 151 63.6
Ah.05g169130 Amaranthus hybridus HOM05D003077 ORTHO05D003354 2.5e-44 182.6 155 64.5
arahy.Tifrunner.gnm1.ann1.RUFP3A Arachis hypogaea HOM05D003077 ORTHO05D003354 2.5e-44 182.6 151 63.6
Nitab4.5_0001168g0100 Nicotiana tabacum HOM05D003077 ORTHO05D003354 2.5e-44 182.6 174 58.0
Lalb_Chr11g0066171 Lupinus albus HOM05D003077 ORTHO05D003354 3.3e-44 182.2 162 61.1
Nitab4.5_0003863g0040 Nicotiana tabacum HOM05D003077 ORTHO05D003354 4.3e-44 181.8 174 58.0
MBI03_g39653_MAGBIO Magnolia biondii HOM05D003077 ORTHO05D003354 5.7e-44 181.4 153 66.0
Ca_16606_v3 Cicer arietinum L. HOM05D003077 ORTHO05D005230 2.2e-43 179.5 150 64.7
EL10Ac1g01345 Beta vulgaris HOM05D003077 ORTHO05D003354 3.7e-43 178.7 183 56.8
Lj1g0006258 Lotus japonicus HOM05D003077 ORTHO05D003354 3.7e-43 178.7 146 67.1
TPR.G28812 Trifolium pratense HOM05D003077 ORTHO05D003354 3.7e-43 178.7 166 62.0
CAN.G716.6 Capsicum annuum HOM05D003077 ORTHO05D003354 4.8e-43 178.3 154 63.0
DCAR_016656 Daucus carota HOM05D003077 ORTHO05D003354 6.3e-43 177.9 162 61.7
Medtr1g029680 Medicago truncatula HOM05D003077 ORTHO05D003354 6.3e-43 177.9 165 61.2
Psat5g084800 Pisum sativum HOM05D003077 ORTHO05D003354 6.3e-43 177.9 150 65.3
Peaxi162Scf00066g00134 Petunia axillaris HOM05D003077 ORTHO05D003354 8.2e-43 177.6 178 55.1
CANSAT11G0740 Cannabis sativa HOM05D003077 ORTHO05D003354 1.1e-42 177.2 139 68.3
ATR0584G207 Amborella trichopoda HOM05D003077 ORTHO05D003354 1.4e-42 176.8 137 65.7
Lj1g0018738 Lotus japonicus HOM05D003077 ORTHO05D003354 1.4e-42 176.8 151 65.6
Psat6g040480 Pisum sativum HOM05D003077 ORTHO05D003354 1.4e-42 176.8 144 69.4
CDE02G1774 Ceratophyllum demersum HOM05D003077 ORTHO05D003354 4.1e-42 175.3 177 58.8
MBI06_g35211_MAGBIO Magnolia biondii HOM05D003077 ORTHO05D003354 4.1e-42 175.3 142 65.5
Medtr3g088585 Medicago truncatula HOM05D003077 ORTHO05D003354 2.6e-41 172.6 155 61.9
Lsat_1_v5_gn_6_110261 Lactuca sativa HOM05D003077 ORTHO05D003354 7.6e-41 171.0 148 64.2
VMungo1215G2387 Vigna mungo HOM05D003077 ORTHO05D003354 1.7e-40 169.9 139 64.7
Lalb_Chr23g0271171 Lupinus albus HOM05D003077 ORTHO05D003354 2.2e-40 169.5 149 63.8
RcHm_v2.0_Chr6g0296701 Rosa chinensis HOM05D003077 ORTHO05D003354 2.2e-40 169.5 166 59.0
HanXRQChr05g0149791 Helianthus annuus HOM05D003077 ORTHO05D003354 3.8e-40 168.7 155 61.3
PSO528G0274 Papaver somniferum HOM05D003077 ORTHO05D003354 5.5e-39 164.9 151 60.9
Aqoxy2G02388 Aquilegia oxysepala HOM05D003077 ORTHO05D003354 7.2e-39 164.5 138 63.0
Lsat_1_v5_gn_1_7800 Lactuca sativa HOM05D003077 ORTHO05D003354 7.2e-39 164.5 165 57.6
SEGI_13465 Sequoiadendron giganteum HOM05D003077 ORTHO05D003354 3.6e-38 162.2 139 63.3
PSO170G0953 Papaver somniferum HOM05D003077 ORTHO05D003354 1.8e-37 159.8 151 59.6
ECA246G2541 Erigeron canadensis HOM05D003077 ORTHO05D003354 3.3e-36 155.6 176 52.3
Sed0001846 Sechium edule HOM05D003077 ORTHO05D003354 9.7e-36 154.1 175 53.7
SGA_v2.0_scaffold28G11976 Striga asiatica HOM05D003077 ORTHO05D003354 1.7e-32 143.3 180 50.0
Migut.N03265 Erythranthe guttata HOM05D003077 ORTHO05D003354 8.5e-32 141.0 156 53.8
CSS0012408 Camellia sinensis var. sinensis HOM05D003077 ORTHO05D003354 1.9e-31 139.8 93 74.2
CSS0038864 Camellia sinensis var. sinensis HOM05D003077 ORTHO05D003354 1.9e-31 139.8 93 74.2
SalBow2G2699 Salvia bowleyana HOM05D003077 ORTHO05D003354 4.2e-31 138.7 176 48.9
MSTRG.25361 Avicennia marina HOM05D003077 ORTHO05D003354 2.7e-30 136.0 176 49.4
Pp3c3_8000 Physcomitrium patens HOM05D003077 ORTHO05D003354 2.7e-30 136.0 141 52.5
Zm00001eb145640 Zea mays HOM05D003077 ORTHO05D003354 2.7e-30 136.0 144 55.6
CSS0019818 Camellia sinensis var. sinensis HOM05D003077 ORTHO05D003354 3.6e-30 135.6 85 77.6
Mapoly0042s0059 Marchantia polymorpha HOM05D003077 ORTHO05D003354 6.1e-30 134.8 143 56.6
Cc10_g12800 Coffea canephora HOM05D003077 ORTHO05D003354 1.0e-29 134.0 193 45.6
MSTRG.1414 Avicennia marina HOM05D003077 ORTHO05D003354 2.3e-29 132.9 179 48.6
unitig_0.g901 Utricularia gibba HOM05D003077 ORTHO05D003354 8.8e-29 131.0 167 49.7
Pp3c13_4490 Physcomitrium patens HOM05D003077 ORTHO05D003354 2.6e-28 129.4 141 51.1
HanXRQChr16g0503811 Helianthus annuus HOM05D005364 ORTHO05D006554 3.3e-28 129.0 77 80.5
RcHm_v2.0_Chr6g0293421 Rosa chinensis HOM05D003077 ORTHO05D003354 7.4e-28 127.9 78 83.3
Oeu040401.1 Olea europaea HOM05D003077 ORTHO05D003354 9.7e-28 127.5 182 46.2
AUR62007718 Chenopodium quinoa HOM05D001245 ORTHO05D004475 1.3e-27 127.1 161 50.3
TPR.G30547 Trifolium pratense HOM05D003077 ORTHO05D003354 2.8e-27 125.9 83 78.3
unitig_744.g24563 Utricularia gibba HOM05D005356 ORTHO05D006596 2.8e-27 125.9 171 47.4
AUR62013425 Chenopodium quinoa HOM05D003077 ORTHO05D003354 8.2e-27 124.4 167 47.9
TAR229G0004 Trochodendron aralioides HOM05D003077 ORTHO05D003354 1.4e-26 123.6 169 46.7
unitig_61.g26062 Utricularia gibba HOM05D003077 ORTHO05D003354 1.4e-26 123.6 158 48.7
SMO116G0073 Selaginella moellendorffii HOM05D003077 ORTHO05D003354 9.1e-26 120.9 149 51.7
Migut.C01065 Erythranthe guttata HOM05D003077 ORTHO05D003354 1.5e-25 120.2 176 46.6
AagrBONN_evm.TU.Sc2ySwM_344.3402__3403 Anthoceros agrestis HOM05D003077 ORTHO05D003354 3.4e-25 119.0 139 48.9
SGA_v2.0_scaffold24G10423 Striga asiatica HOM05D003077 ORTHO05D003354 1.0e-24 117.5 176 46.6
Oeu033990.1 Olea europaea HOM05D003077 ORTHO05D003354 6.5e-24 114.8 175 46.9
SalBow7G0800 Salvia bowleyana HOM05D003077 ORTHO05D003354 1.1e-23 114.0 176 43.2
SalBow7G2753 Salvia bowleyana HOM05D003077 ORTHO05D003354 9.4e-23 110.9 176 41.5
CDE08G0053 Ceratophyllum demersum HOM05D003077 ORTHO05D003354 1.2e-22 110.5 175 42.9
SGA_v2.0_scaffold81G26136 Striga asiatica HOM05D003077 ORTHO05D003354 3.6e-22 109.0 173 43.4
Duzib041G0777 Durio zibethinus HOM05D003077 ORTHO05D003354 5.2e-21 105.1 58 87.9
SGA_v2.0_scaffold25G11135 Striga asiatica HOM05D003077 ORTHO05D003354 5.2e-21 105.1 179 43.6
CBR_g45850 Chara braunii HOM05D003077 ORTHO05D003354 3.7e-19 99.0 179 41.3
SMO367G1174 Selaginella moellendorffii HOM05D003077 ORTHO05D003354 3.8e-16 89.0 143 44.1
Potri.007G101201 Populus trichocarpa HOM05D003077 ORTHO05D003354 1.5e-15 87.0 149 38.3
HPP92_025168 Vanilla planifolia HOM05D003077 ORTHO05D003354 9.4e-15 84.3 110 49.1
HanXRQChr12g0380661 Helianthus annuus HOM05D003077 ORTHO05D003354 2.1e-14 83.2 51 80.4
SEGI_22624 Sequoiadendron giganteum HOM05D003077 ORTHO05D003354 1.4e-13 80.5 106 49.1
SGA_v2.0_scaffold52G18922 Striga asiatica HOM05D003077 ORTHO05D003354 5.7e-12 75.1 176 38.1
TPR.G39636 Trifolium pratense HOM05D003077 ORTHO05D003354 2.2e-11 73.2 57 66.7
Sabra07G0083500 Salix brachista HOM05D003077 ORTHO05D003354 1.1e-10 70.9 50 66.0
CSS0008649 Camellia sinensis var. sinensis HOM05D003077 ORTHO05D003354 1.6e-09 67.0 97 45.4
Ca_13271_v3 Cicer arietinum L. HOM05D002258 ORTHO05D002539 2.7e-06 56.2 77 48.1


User provided reference genes

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