Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc64.166 Carica papaya HOM05D005179 ORTHO05D006225 3.5e-64 248.4 154 100.0
Thecc.01G282700 Theobroma cacao HOM05D005179 ORTHO05D006225 3.9e-23 112.1 139 54.0
Nitab4.5_0001028g0210 Nicotiana tabacum HOM05D005179 ORTHO05D006225 1.1e-22 110.5 147 43.5
CANSAT25G0479 Cannabis sativa HOM05D005179 ORTHO05D006225 3.3e-22 109.0 152 46.1
Atru.chr5.1383 Acer truncatum HOM05D005179 ORTHO05D006225 5.6e-22 108.2 165 50.9
Gohir.A11G121400 Gossypium hirsutum HOM05D005179 ORTHO05D006225 2.4e-20 102.8 146 45.2
Oeu015958.1 Olea europaea HOM05D005179 ORTHO05D006225 2.4e-20 102.8 142 47.9
Sc05g0004870 Simmondsia chinensis HOM05D005179 ORTHO05D006225 3.1e-20 102.4 144 50.7
Gohir.D11G126500 Gossypium hirsutum HOM05D005179 ORTHO05D006225 4.0e-20 102.1 148 48.0
Gorai.007G135300 Gossypium raimondii HOM05D005179 ORTHO05D006225 4.0e-20 102.1 148 46.6
Lj5g0012316 Lotus japonicus HOM05D005179 ORTHO05D006225 3.4e-19 99.0 148 43.9
MSTRG.21570 Avicennia marina HOM05D005179 ORTHO05D006225 4.4e-19 98.6 144 49.3
Ciclev10024447m.g Citrus clementina HOM05D005179 ORTHO05D006225 5.8e-19 98.2 118 48.3
Dinv11251 Davidia involucrata HOM05D005179 ORTHO05D006225 5.8e-19 98.2 125 52.0
THA.LOC104817549 Tarenaya hassleriana HOM05D005179 ORTHO05D006225 7.6e-19 97.8 178 42.7
Ah.08g213000 Amaranthus hybridus HOM05D005179 ORTHO05D006225 9.9e-19 97.4 127 44.1
THA.LOC104802228 Tarenaya hassleriana HOM05D005179 ORTHO05D006225 1.3e-18 97.1 188 40.4
Ah.15g091740 Amaranthus hybridus HOM05D005179 ORTHO05D006225 1.7e-18 96.7 168 43.5
Solyc09g064900.1 Solanum lycopersicum HOM05D005179 ORTHO05D006225 2.2e-18 96.3 141 56.7
Dinv32955 Davidia involucrata HOM05D005179 ORTHO05D006225 2.9e-18 95.9 147 54.4
TPR.G1598 Trifolium pratense HOM05D005179 ORTHO05D006225 2.9e-18 95.9 150 50.7
Sc24g0004150 Simmondsia chinensis HOM05D005179 ORTHO05D006225 8.4e-18 94.4 155 47.1
COL.COLO4_09131 Corchorus olitorius HOM05D005179 ORTHO05D006225 1.1e-17 94.0 134 50.7
unitig_8.g3720 Utricularia gibba HOM05D005179 ORTHO05D006225 1.1e-17 94.0 154 48.7
Hma1.2p1_0628F.1_g191965 Hydrangea macrophylla HOM05D005179 ORTHO05D006225 1.4e-17 93.6 175 44.0
Lalb_Chr21g0306521 Lupinus albus HOM05D005179 ORTHO05D006225 1.4e-17 93.6 149 48.3
Phvul.001G149300 Phaseolus vulgaris HOM05D005179 ORTHO05D006225 1.4e-17 93.6 149 48.3
SalBow6G3683 Salvia bowleyana HOM05D005179 ORTHO05D006225 1.4e-17 93.6 157 40.8
TWI59G1208 Tripterygium wilfordii HOM05D005179 ORTHO05D006225 1.9e-17 93.2 143 35.0
Glyma.03G151700 Glycine max HOM05D005179 ORTHO05D006225 2.4e-17 92.8 141 51.1
DCAR_018411 Daucus carota HOM05D005179 ORTHO05D006225 3.2e-17 92.4 159 44.7
Lj1g0021337 Lotus japonicus HOM05D005179 ORTHO05D006225 3.2e-17 92.4 155 45.2
PGR044G1538 Punica granatum HOM05D005179 ORTHO05D006225 3.2e-17 92.4 161 46.0
VMungo1383G3409 Vigna mungo HOM05D005179 ORTHO05D006225 3.2e-17 92.4 150 46.7
Aa31LG10G16940 Aethionema arabicum HOM05D005179 ORTHO05D006225 7.1e-17 91.3 133 51.9
SalBow4G1980 Salvia bowleyana HOM05D005179 ORTHO05D006225 7.1e-17 91.3 145 49.0
ClCG07G000210 Citrullus lanatus HOM05D005179 ORTHO05D006225 9.3e-17 90.9 143 46.9
arahy.Tifrunner.gnm1.ann1.AZF37F Arachis hypogaea HOM05D000257 ORTHO05D009070 1.2e-16 90.5 152 47.4
arahy.Tifrunner.gnm1.ann1.YN028F Arachis hypogaea HOM05D000257 ORTHO05D009070 1.2e-16 90.5 152 47.4
Migut.D00272 Erythranthe guttata HOM05D005179 ORTHO05D006225 1.2e-16 90.5 171 43.9
Sopen09g026600 Solanum pennellii HOM05D005179 ORTHO05D006225 3.5e-16 89.0 142 52.8
Duzib138G1054 Durio zibethinus HOM05D005179 ORTHO05D006225 6.0e-16 88.2 156 42.9
MSTRG.18220 Avicennia marina HOM05D005179 ORTHO05D006225 1.0e-15 87.4 154 33.8
Glyma.19G154300 Glycine max HOM05D005179 ORTHO05D006225 1.0e-15 87.4 148 48.0
Potri.002G215200 Populus trichocarpa HOM05D005179 ORTHO05D006225 1.0e-15 87.4 142 38.0
Prupe.8G243700 Prunus persica HOM05D005179 ORTHO05D006225 1.3e-15 87.0 163 45.4
DCAR_002746 Daucus carota HOM05D005179 ORTHO05D006225 1.7e-15 86.7 148 45.3
SGA_v2.0_scaffold80G25940 Striga asiatica HOM05D005179 ORTHO05D006225 1.7e-15 86.7 149 43.0
VMungo0720G0860 Vigna mungo HOM05D005179 ORTHO05D006225 1.7e-15 86.7 145 31.7
Ca_08572_v3 Cicer arietinum L. HOM05D005179 ORTHO05D006225 3.0e-15 85.9 158 39.2
MD03G1268100 Malus domestica HOM05D005179 ORTHO05D006225 3.9e-15 85.5 132 43.2
CAN.G609.9 Capsicum annuum HOM05D005179 ORTHO05D006225 5.1e-15 85.1 141 46.8
Gohir.D08G077500 Gossypium hirsutum HOM05D005179 ORTHO05D006225 6.6e-15 84.7 157 50.3
Medtr1g032050 Medicago truncatula HOM05D005179 ORTHO05D006225 1.1e-14 84.0 153 40.5
Medtr1g032400 Medicago truncatula HOM05D005179 ORTHO05D006225 1.1e-14 84.0 153 40.5
Psat6g061040 Pisum sativum HOM05D005179 ORTHO05D006225 1.1e-14 84.0 123 47.2
Sed0008870 Sechium edule HOM05D005179 ORTHO05D006225 1.1e-14 84.0 113 39.8
Manes.01G209200 Manihot esculenta HOM05D005179 ORTHO05D006225 1.5e-14 83.6 119 50.4
Sed0002169 Sechium edule HOM05D005179 ORTHO05D006225 1.5e-14 83.6 151 44.4
Gohir.A12G005800 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.9e-14 83.2 144 43.1
Rhsim13G0023300 Rhododendron simsii HOM05D005179 ORTHO05D006225 1.9e-14 83.2 182 37.9
GSVIVG01011106001 Vitis vinifera HOM05D005179 ORTHO05D006225 1.9e-14 83.2 49 71.4
CiPaw.08G103900 Carya illinoinensis HOM05D005179 ORTHO05D006225 2.5e-14 82.8 167 43.7
SGA_v2.0_scaffold11G05800 Striga asiatica HOM05D005179 ORTHO05D006225 2.5e-14 82.8 140 36.4
Ca_09769_v3 Cicer arietinum L. HOM05D005179 ORTHO05D006225 3.3e-14 82.4 150 49.3
Potri.014G139200 Populus trichocarpa HOM05D005179 ORTHO05D006225 3.3e-14 82.4 151 41.1
A09p54910 Brassica napus HOM05D000257 ORTHO05D009070 4.3e-14 82.0 51 62.7
BraA09t40901Z Brassica rapa HOM05D000257 ORTHO05D009070 4.3e-14 82.0 51 62.7
Gorai.004G082400 Gossypium raimondii HOM05D005179 ORTHO05D006225 4.3e-14 82.0 163 48.5
MD11G1289000 Malus domestica HOM05D000257 ORTHO05D009070 4.3e-14 82.0 138 44.9
Manes.05G074200 Manihot esculenta HOM05D005179 ORTHO05D006225 4.3e-14 82.0 143 42.7
CARHR173410 Cardamine hirsuta HOM05D005179 ORTHO05D006225 5.6e-14 81.6 51 62.7
Gorai.009G014800 Gossypium raimondii HOM05D005179 ORTHO05D006225 5.6e-14 81.6 140 43.6
Sabra14G0104900 Salix brachista HOM05D005179 ORTHO05D006225 5.6e-14 81.6 146 45.2
Gohir.D12G005300 Gossypium hirsutum HOM05D005179 ORTHO05D006225 7.3e-14 81.3 140 43.6
Gorai.008G005200 Gossypium raimondii HOM05D005179 ORTHO05D006225 7.3e-14 81.3 140 43.6
Sabra02G0167400 Salix brachista HOM05D005179 ORTHO05D006225 7.3e-14 81.3 141 37.6
Sopen02g023170 Solanum pennellii HOM05D005179 ORTHO05D006225 7.3e-14 81.3 150 42.0
AL5G45930 Arabidopsis lyrata HOM05D005179 ORTHO05D006225 1.6e-13 80.1 51 62.7
AT3G63095 Arabidopsis thaliana HOM05D005179 ORTHO05D006225 1.6e-13 80.1 51 62.7
C08p37810 Brassica napus HOM05D000257 ORTHO05D009070 1.6e-13 80.1 51 60.8
BolC8t51360H Brassica oleracea HOM05D000257 ORTHO05D009070 1.6e-13 80.1 51 60.8
Carub.0005s2976 Capsella rubella HOM05D005179 ORTHO05D006225 1.6e-13 80.1 51 62.7
TWI59G0379 Tripterygium wilfordii HOM05D005179 ORTHO05D006225 1.6e-13 80.1 206 38.8
Glyma.10G025200 Glycine max HOM05D005179 ORTHO05D006225 2.1e-13 79.7 149 46.3
CsaV3_7G028640 Cucumis sativus L. HOM05D005179 ORTHO05D006225 2.8e-13 79.3 145 40.0
A07p26240 Brassica napus HOM05D005179 ORTHO05D006225 3.6e-13 79.0 51 58.8
C06p28620 Brassica napus HOM05D005179 ORTHO05D006225 3.6e-13 79.0 51 58.8
BolC6t38030H Brassica oleracea HOM05D005179 ORTHO05D006225 3.6e-13 79.0 51 58.8
BraA07t30267Z Brassica rapa HOM05D005179 ORTHO05D006225 3.6e-13 79.0 51 58.8
Gohir.D08G077600 Gossypium hirsutum HOM05D005179 ORTHO05D006225 3.6e-13 79.0 163 37.4
Nitab4.5_0002386g0020 Nicotiana tabacum HOM05D005179 ORTHO05D006225 3.6e-13 79.0 54 53.7
Actinidia21103 Actinidia chinensis HOM05D000756 ORTHO05D000604 4.8e-13 78.6 113 54.0
Aqoxy2G03259 Aquilegia oxysepala HOM05D005179 ORTHO05D006225 4.8e-13 78.6 166 47.6
Medtr7g094650 Medicago truncatula HOM05D005179 ORTHO05D006225 4.8e-13 78.6 165 40.6
TAR636G3147 Trochodendron aralioides HOM05D005179 ORTHO05D006225 4.8e-13 78.6 163 41.1
Phvul.007G170000 Phaseolus vulgaris HOM05D005179 ORTHO05D006225 6.2e-13 78.2 151 28.5
CSS0035012 Camellia sinensis var. sinensis HOM05D005179 ORTHO05D006225 8.1e-13 77.8 168 41.1
A04p00290 Brassica napus HOM05D005179 ORTHO05D006225 1.1e-12 77.4 51 56.9
C04p30120 Brassica napus HOM05D005179 ORTHO05D006225 1.1e-12 77.4 51 56.9
BolC4t24544H Brassica oleracea HOM05D005179 ORTHO05D006225 1.1e-12 77.4 51 56.9
BraA04t15748Z Brassica rapa HOM05D005179 ORTHO05D006225 1.1e-12 77.4 51 56.9
Glyma.02G148700 Glycine max HOM05D005179 ORTHO05D006225 1.1e-12 77.4 149 45.6
Lalb_Chr01g0020211 Lupinus albus HOM05D005179 ORTHO05D006225 1.1e-12 77.4 161 37.9
Manes.01G209300 Manihot esculenta HOM05D005179 ORTHO05D006225 1.1e-12 77.4 50 60.0
PGSC0003DMG400020123 Solanum tuberosum HOM05D005179 ORTHO05D006225 1.4e-12 77.0 147 40.8
Eucgr.K03387 Eucalyptus grandis HOM05D005179 ORTHO05D006225 4.0e-12 75.5 50 60.0
Manes.05G074000 Manihot esculenta HOM05D005179 ORTHO05D006225 4.0e-12 75.5 51 56.9
Sed0008634 Sechium edule HOM05D005179 ORTHO05D006225 4.0e-12 75.5 144 36.1
MELO3C015854.2 Cucumis melo HOM05D005179 ORTHO05D006225 5.3e-12 75.1 147 40.1
Nn1g02158 Nelumbo nucifera HOM05D005179 ORTHO05D006225 5.3e-12 75.1 150 43.3
PSO832G0665 Papaver somniferum HOM05D005179 ORTHO05D006225 5.3e-12 75.1 158 43.7
Psat3g065120 Pisum sativum HOM05D005179 ORTHO05D006225 6.9e-12 74.7 168 39.3
Potri.004G022700 Populus trichocarpa HOM05D005179 ORTHO05D006225 6.9e-12 74.7 146 35.6
Haze_04736 Corylus avellana HOM05D005179 ORTHO05D006225 9.0e-12 74.3 151 44.4
Gohir.A08G069300 Gossypium hirsutum HOM05D005179 ORTHO05D006225 9.0e-12 74.3 167 46.1
PSO210G7214 Papaver somniferum HOM05D005179 ORTHO05D006225 1.2e-11 73.9 50 56.0
Gorai.004G082500 Gossypium raimondii HOM05D005179 ORTHO05D006225 1.5e-11 73.6 155 34.8
Nn4g26188 Nelumbo nucifera HOM05D005179 ORTHO05D006225 1.5e-11 73.6 49 57.1
Aqoxy5G00531 Aquilegia oxysepala HOM05D001530 ORTHO05D003676 4.5e-11 72.0 51 56.9
Cc01_g19710 Coffea canephora HOM05D005179 ORTHO05D006225 1.3e-10 70.5 179 38.0
Rhsim01G0275800 Rhododendron simsii HOM05D000756 ORTHO05D000604 1.3e-10 70.5 48 54.2
Actinidia00740 Actinidia chinensis HOM05D005179 ORTHO05D006225 3.8e-10 68.9 44 59.1
Migut.N02158 Erythranthe guttata HOM05D005179 ORTHO05D006225 3.8e-10 68.9 156 50.0
SGA_v2.0_scaffold258G45766 Striga asiatica HOM05D005179 ORTHO05D006225 3.8e-10 68.9 155 31.6
vmacro14931 Vaccinium macrocarpon HOM05D001530 ORTHO05D003676 3.8e-10 68.9 125 37.6
FAN20G2888 Fragaria x ananassa HOM05D005179 ORTHO05D006225 4.9e-10 68.6 159 38.4
Lsat_1_v5_gn_1_29921 Lactuca sativa HOM05D005179 ORTHO05D006225 4.9e-10 68.6 49 57.1
CiPaw.07G093600 Carya illinoinensis HOM05D005179 ORTHO05D006225 6.4e-10 68.2 160 33.1
Potri.014G139100 Populus trichocarpa HOM05D005179 ORTHO05D006225 6.4e-10 68.2 148 41.9
Lalb_Chr25g0290231 Lupinus albus HOM05D005179 ORTHO05D006225 1.1e-09 67.4 177 37.9
ClCG09G006920 Citrullus lanatus HOM05D000257 ORTHO05D009070 3.2e-09 65.9 163 39.9
ECA247G2094 Erigeron canadensis HOM05D005179 ORTHO05D006225 5.5e-09 65.1 50 48.0
PSO210G2426 Papaver somniferum HOM05D005179 ORTHO05D006225 5.5e-09 65.1 49 46.9
PSO447G0321 Papaver somniferum HOM05D005179 ORTHO05D006225 5.5e-09 65.1 49 46.9
Os03g0357500 Oryza sativa ssp. japonica HOM05D005179 ORTHO05D006225 9.3e-09 64.3 48 52.1
FAN27G1844 Fragaria x ananassa HOM05D005179 ORTHO05D006225 1.2e-08 63.9 46 50.0
Os07g0655800 Oryza sativa ssp. japonica HOM05D005179 ORTHO05D006225 1.2e-08 63.9 48 52.1
Gohir.A08G069200 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.6e-08 63.5 48 52.1
Zm00001eb329500 Zea mays HOM05D005179 ORTHO05D006225 1.6e-08 63.5 48 50.0
Cpa.g.sc52.6 Carica papaya HOM05D005179 ORTHO05D006225 2.1e-08 63.2 71 50.7
Cfa006114 Carpinus fangiana HOM05D005179 ORTHO05D006225 2.7e-08 62.8 116 46.6
FvH4_2g23841 Fragaria vesca HOM05D005179 ORTHO05D006225 2.7e-08 62.8 46 47.8
Zm00001eb017420 Zea mays HOM05D005179 ORTHO05D006225 2.7e-08 62.8 48 50.0
ATR0626G310 Amborella trichopoda HOM05D005179 ORTHO05D006225 3.5e-08 62.4 115 47.8
FAN24G3244 Fragaria x ananassa HOM05D005179 ORTHO05D006225 3.5e-08 62.4 46 47.8
FAN15G0349 Fragaria x ananassa HOM05D005179 ORTHO05D006225 4.6e-08 62.0 46 47.8
FAN15G1538 Fragaria x ananassa HOM05D005179 ORTHO05D006225 4.6e-08 62.0 46 47.8
Zm00001eb394420 Zea mays HOM05D005179 ORTHO05D006225 4.6e-08 62.0 48 47.9
HanXRQChr15g0466391 Helianthus annuus HOM05D005179 ORTHO05D006225 6.0e-08 61.6 46 47.8
ECA236G2709 Erigeron canadensis HOM05D005179 ORTHO05D006225 1.0e-07 60.8 46 52.2
Oeu028081.1 Olea europaea HOM05D005179 ORTHO05D006225 1.5e-06 57.0 46 47.8
RcHm_v2.0_Chr6g0291441 Rosa chinensis HOM05D005179 ORTHO05D006225 1.5e-06 57.0 45 42.2


User provided reference genes

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