Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc64.158 Carica papaya HOM05D006959 ORTHO05D008808 7.7e-115 417.2 210 100.0
Thecc.08G134700 Theobroma cacao HOM05D006959 ORTHO05D008808 8.9e-71 270.8 206 68.9
Duzib093G2176 Durio zibethinus HOM05D006959 ORTHO05D008808 7.5e-70 267.7 208 71.6
Manes.18G084200 Manihot esculenta HOM05D006959 ORTHO05D008808 2.4e-68 262.7 208 70.2
Gohir.A05G238900 Gossypium hirsutum HOM05D006959 ORTHO05D008808 2.1e-67 259.6 209 67.9
TWI32G1355 Tripterygium wilfordii HOM05D006959 ORTHO05D008808 3.5e-67 258.8 213 66.7
CiPaw.16G022000 Carya illinoinensis HOM05D006959 ORTHO05D008808 4.6e-67 258.5 211 64.5
THA.LOC104813687 Tarenaya hassleriana HOM05D006959 ORTHO05D008808 1.0e-66 257.3 214 64.0
Potri.002G076700 Populus trichocarpa HOM05D006959 ORTHO05D008808 5.1e-66 255.0 203 68.0
Nn1g08935 Nelumbo nucifera HOM05D006959 ORTHO05D008808 8.6e-66 254.2 212 67.0
Atru.chr13.1599 Acer truncatum HOM05D006959 ORTHO05D008808 1.9e-65 253.1 206 68.0
Gohir.D05G240800 Gossypium hirsutum HOM05D006959 ORTHO05D008808 1.9e-65 253.1 209 66.5
Gorai.009G249600 Gossypium raimondii HOM05D006959 ORTHO05D008808 3.3e-65 252.3 209 66.5
Ciclev10002542m.g Citrus clementina HOM05D006959 ORTHO05D008808 1.2e-64 250.4 204 68.6
Cfa018414 Carpinus fangiana HOM05D006959 ORTHO05D008808 2.8e-64 249.2 214 64.5
RcHm_v2.0_Chr6g0297021 Rosa chinensis HOM05D006959 ORTHO05D008808 1.1e-63 247.3 214 62.1
FvH4_2g28060 Fragaria vesca HOM05D006959 ORTHO05D008808 1.8e-63 246.5 218 61.0
TAR381G0659 Trochodendron aralioides HOM05D006959 ORTHO05D008808 1.8e-63 246.5 207 64.3
FAN24G0315 Fragaria x ananassa HOM05D006959 ORTHO05D008808 4.0e-63 245.4 218 61.0
FAN27G3284 Fragaria x ananassa HOM05D006959 ORTHO05D008808 6.8e-63 244.6 218 60.1
Hma1.2p1_0159F.1_g070330 Hydrangea macrophylla HOM05D006959 ORTHO05D008808 1.5e-62 243.4 217 63.1
QL09p031824 Quercus lobata HOM05D006959 ORTHO05D008808 4.4e-62 241.9 220 63.2
COL.COLO4_32963 Corchorus olitorius HOM05D006959 ORTHO05D008808 1.3e-61 240.4 213 61.5
MD15G1131600 Malus domestica HOM05D006959 ORTHO05D008808 2.2e-61 239.6 213 63.4
QL09p031413 Quercus lobata HOM05D006959 ORTHO05D008808 2.9e-61 239.2 220 62.7
PGR042G0886 Punica granatum HOM05D006959 ORTHO05D008808 3.8e-61 238.8 225 59.1
VMungo0647G0259 Vigna mungo HOM05D006959 ORTHO05D008808 1.9e-60 236.5 202 62.9
Sp5g32400 Schrenkiella parvula HOM05D006959 ORTHO05D008808 3.2e-60 235.7 218 59.6
CARHR070700 Cardamine hirsuta HOM05D006959 ORTHO05D008808 5.4e-60 235.0 207 59.9
Haze_17647 Corylus avellana HOM05D006959 ORTHO05D008808 7.1e-60 234.6 229 59.4
Glyma.13G035500 Glycine max HOM05D006959 ORTHO05D008808 1.6e-59 233.4 202 63.9
Sed0020251 Sechium edule HOM05D006959 ORTHO05D008808 2.7e-59 232.6 210 62.9
Thhalv10019109m.g Eutrema salsugineum HOM05D006959 ORTHO05D008808 4.6e-59 231.9 222 56.3
Phvul.001G066600 Phaseolus vulgaris HOM05D006959 ORTHO05D008808 1.0e-58 230.7 203 62.1
Oeu026374.1 Olea europaea HOM05D006959 ORTHO05D008808 2.3e-58 229.6 218 57.8
AL2G37400 Arabidopsis lyrata HOM05D006959 ORTHO05D008808 5.1e-58 228.4 213 58.2
CsaV3_6G033990 Cucumis sativus L. HOM05D006959 ORTHO05D008808 5.1e-58 228.4 216 61.6
HanXRQChr02g0045531 Helianthus annuus HOM05D006959 ORTHO05D008808 5.1e-58 228.4 202 62.9
AT1G77230 Arabidopsis thaliana HOM05D006959 ORTHO05D008808 6.6e-58 228.0 217 57.6
ClCG08G006070 Citrullus lanatus HOM05D006959 ORTHO05D008808 6.6e-58 228.0 243 54.7
Eucgr.F03861 Eucalyptus grandis HOM05D006959 ORTHO05D008808 1.1e-57 227.3 224 57.6
Lsat_1_v5_gn_1_10340 Lactuca sativa HOM05D006959 ORTHO05D008808 1.1e-57 227.3 211 61.1
Lj4A666T17 Lonicera japonica HOM05D006959 ORTHO05D008808 2.5e-57 226.1 210 61.4
BcaC08g45484 Brassica carinata HOM05D006959 ORTHO05D008808 5.6e-57 224.9 202 57.9
Lj4A663T33 Lonicera japonica HOM05D006959 ORTHO05D008808 7.3e-57 224.6 206 62.1
Cc10_g14010 Coffea canephora HOM05D006959 ORTHO05D008808 9.6e-57 224.2 206 59.7
Hund17359 Selenicereus undatus HOM05D006959 ORTHO05D008808 6.2e-56 221.5 208 62.5
Aa31LG4G7230 Aethionema arabicum HOM05D006959 ORTHO05D008808 8.1e-56 221.1 233 53.6
Sabra02G0060200 Salix brachista HOM05D006959 ORTHO05D008808 1.8e-55 219.9 271 50.9
GSVIVG01008793001 Vitis vinifera HOM05D006959 ORTHO05D008808 4.0e-55 218.8 146 77.4
Carub.0002s2410 Capsella rubella HOM05D006959 ORTHO05D008808 9.0e-55 217.6 218 56.0
A08p07140 Brassica napus HOM05D006959 ORTHO05D008808 1.5e-54 216.9 205 57.1
C06p31380 Brassica napus HOM05D006959 ORTHO05D008808 1.5e-54 216.9 204 56.9
BraA08t32726Z Brassica rapa HOM05D006959 ORTHO05D008808 1.5e-54 216.9 205 57.1
Aqoxy6G00289 Aquilegia oxysepala HOM05D006959 ORTHO05D008808 2.6e-54 216.1 143 77.6
Migut.C01073 Erythranthe guttata HOM05D006959 ORTHO05D008808 2.6e-54 216.1 215 58.6
BolC6t38274H Brassica oleracea HOM05D006959 ORTHO05D008808 4.4e-54 215.3 204 56.9
MELO3C008461.2 Cucumis melo HOM05D006959 ORTHO05D008808 4.4e-54 215.3 223 57.4
Peaxi162Scf00066g00072 Petunia axillaris HOM05D006959 ORTHO05D008808 4.4e-54 215.3 202 58.4
PGSC0003DMG402018005 Solanum tuberosum HOM05D006959 ORTHO05D008808 4.4e-54 215.3 207 58.5
CAN.G46.11 Capsicum annuum HOM05D006959 ORTHO05D008808 9.9e-54 214.2 202 58.9
arahy.Tifrunner.gnm1.ann1.P1MCWD Arachis hypogaea HOM05D006959 ORTHO05D008808 1.3e-53 213.8 203 60.1
Sopen04g026100 Solanum pennellii HOM05D006959 ORTHO05D008808 1.3e-53 213.8 203 58.1
PGSC0003DMG403018005 Solanum tuberosum HOM05D006959 ORTHO05D008808 1.3e-53 213.8 207 58.5
FAN20G3215 Fragaria x ananassa HOM05D006959 ORTHO05D008808 1.7e-53 213.4 218 56.0
AUR62007695 Chenopodium quinoa HOM05D006959 ORTHO05D008808 2.9e-53 212.6 215 56.7
CDE06G1932 Ceratophyllum demersum HOM05D006959 ORTHO05D008808 6.4e-53 211.5 195 61.5
AUR62013448 Chenopodium quinoa HOM05D006959 ORTHO05D008808 1.1e-52 210.7 215 56.3
MSTRG.1406 Avicennia marina HOM05D006959 ORTHO05D008808 2.4e-52 209.5 219 55.7
Os02g0553500 Oryza sativa ssp. japonica HOM05D006959 ORTHO05D008808 4.2e-52 208.8 204 56.9
Nitab4.5_0002625g0010 Nicotiana tabacum HOM05D006959 ORTHO05D008808 7.1e-52 208.0 207 57.5
MBI03_g13506_MAGBIO Magnolia biondii HOM05D006959 ORTHO05D008808 2.7e-51 206.1 223 57.0
Zm00001eb181980 Zea mays HOM05D006959 ORTHO05D008808 4.6e-51 205.3 210 55.2
Actinidia24726 Actinidia chinensis HOM05D006959 ORTHO05D008808 1.3e-50 203.8 180 63.3
SalBow7G4180 Salvia bowleyana HOM05D006959 ORTHO05D008808 8.7e-50 201.1 235 51.9
Hma1.2p1_0159F.1_g070340 Hydrangea macrophylla HOM05D006959 ORTHO05D008808 4.3e-49 198.7 198 58.1
PSO170G0856 Papaver somniferum HOM05D006959 ORTHO05D008808 4.3e-49 198.7 143 69.2
PSO528G0249 Papaver somniferum HOM05D006959 ORTHO05D008808 4.3e-49 198.7 232 51.7
CANSAT64G0796 Cannabis sativa HOM05D006959 ORTHO05D008808 5.6e-49 198.4 209 55.5
BcaB02g07099 Brassica carinata HOM05D006959 ORTHO05D008808 7.3e-49 198.0 213 52.1
Nitab4.5_0008327g0010 Nicotiana tabacum HOM05D006959 ORTHO05D008808 9.6e-49 197.6 233 52.4
Lj1g0023549 Lotus japonicus HOM05D006959 ORTHO05D008808 2.1e-48 196.4 208 55.3
Actinidia15201 Actinidia chinensis HOM05D006959 ORTHO05D008808 6.2e-48 194.9 211 55.5
EL10Ac1g01371 Beta vulgaris HOM05D006959 ORTHO05D008808 4.0e-47 192.2 244 48.8
HPP92_016131 Vanilla planifolia HOM05D006959 ORTHO05D008808 5.3e-47 191.8 209 51.2
Medtr1g029720 Medicago truncatula HOM05D006959 ORTHO05D008808 4.9e-45 185.3 204 52.9
arahy.Tifrunner.gnm1.ann1.84IAJ5 Arachis hypogaea HOM05D006959 ORTHO05D008808 3.5e-43 179.1 180 57.8
CSS0019542 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 5.1e-42 175.3 206 51.9
Lalb_Chr04g0253591 Lupinus albus HOM05D006959 ORTHO05D008808 8.7e-42 174.5 202 51.5
Glyma.14G156700 Glycine max HOM05D006959 ORTHO05D008808 2.1e-40 169.9 214 48.6
Ca_12642_v3 Cicer arietinum L. HOM05D006959 ORTHO05D008808 1.4e-39 167.2 222 48.6
Solyc04g058200.3 Solanum lycopersicum HOM05D006959 ORTHO05D008808 3.8e-37 159.1 112 71.4
ATR0584G163 Amborella trichopoda HOM05D006959 ORTHO05D008808 2.5e-36 156.4 156 54.5
Dinv27258 Davidia involucrata HOM05D006959 ORTHO05D008808 3.3e-33 146.0 127 64.6
DCAR_028201 Daucus carota HOM05D006959 ORTHO05D008808 1.1e-31 141.0 203 44.3
Prupe.1G487500 Prunus persica HOM05D006959 ORTHO05D008808 6.9e-31 138.3 217 42.4
Psat6g040840 Pisum sativum HOM05D006959 ORTHO05D008808 1.7e-29 133.7 146 54.1
TPR.G879 Trifolium pratense HOM05D006959 ORTHO05D008808 9.3e-28 127.9 82 76.8
RcHm_v2.0_Chr6g0296961 Rosa chinensis HOM05D006959 ORTHO05D008808 6.7e-26 121.7 69 82.6
CSS0009415 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 1.8e-23 113.6 135 50.4
CSS0036249 Camellia sinensis var. sinensis HOM05D006959 ORTHO05D008808 4.5e-22 109.0 131 49.6
Sc26g0002850 Simmondsia chinensis HOM05D006959 ORTHO05D008808 4.2e-20 102.4 206 35.4
SGA_v2.0_scaffold52G18911 Striga asiatica HOM05D006959 ORTHO05D008808 4.2e-20 102.4 129 48.8
Mapoly0050s0106 Marchantia polymorpha HOM05D006959 ORTHO05D008808 7.9e-19 98.2 87 56.3
Cre12.g510034 Chlamydomonas reinhardtii HOM05D006959 ORTHO05D008808 2.6e-14 83.2 101 46.5
SEGI_05118 Sequoiadendron giganteum HOM05D006959 ORTHO05D008808 2.6e-14 83.2 82 47.6
RcHm_v2.0_Chr6g0296981 Rosa chinensis HOM05D006959 ORTHO05D008808 3.4e-14 82.8 57 73.7
SEGI_04582 Sequoiadendron giganteum HOM05D006959 ORTHO05D008808 1.7e-13 80.5 82 47.6
FAN24G1784 Fragaria x ananassa HOM05D006959 ORTHO05D008808 1.5e-09 67.4 47 68.1
FAN27G2285 Fragaria x ananassa HOM05D006959 ORTHO05D008808 2.6e-09 66.6 98 40.8
RcHm_v2.0_Chr7g0202131 Rosa chinensis HOM05D002462 ORTHO05D002893 2.6e-06 56.6 166 26.5
Carub.0006s2688 Capsella rubella HOM05D005920 ORTHO05D007211 4.5e-06 55.8 129 29.5
Cre03.g189950 Chlamydomonas reinhardtii HOM05D002462 ORTHO05D002893 4.5e-06 55.8 134 29.9
Os02g0644100 Oryza sativa ssp. japonica HOM05D002462 ORTHO05D002893 5.9e-06 55.5 111 29.7


User provided reference genes

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