Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc628.1 Carica papaya HOM05D000093 ORTHO05D007434 5.8e-20 99.8 45 100.0
CSS0027949 Camellia sinensis var. sinensis HOM05D000093 ORTHO05D007434 1.2e-17 92.0 45 86.7
Atru.chr9.26 Acer truncatum HOM05D000093 ORTHO05D007434 2.7e-17 90.9 43 90.7
Cfa017809 Carpinus fangiana HOM05D000093 ORTHO05D007434 2.7e-17 90.9 43 93.0
Phvul.004G136300 Phaseolus vulgaris HOM05D000093 ORTHO05D007434 2.7e-17 90.9 43 93.0
QL10p035887 Quercus lobata HOM05D000093 ORTHO05D007434 2.7e-17 90.9 43 93.0
VMungo0464G1413 Vigna mungo HOM05D000093 ORTHO05D007434 2.7e-17 90.9 43 93.0
PGR044G2160 Punica granatum HOM05D000093 ORTHO05D007434 3.5e-17 90.5 43 93.0
arahy.Tifrunner.gnm1.ann1.1R2DUV Arachis hypogaea HOM05D000093 ORTHO05D007434 6.0e-17 89.7 43 90.7
arahy.Tifrunner.gnm1.ann1.210MU5 Arachis hypogaea HOM05D000093 ORTHO05D007434 6.0e-17 89.7 43 90.7
Lalb_Chr14g0370121 Lupinus albus HOM05D000093 ORTHO05D007434 6.0e-17 89.7 43 90.7
GSVIVG01024242001 Vitis vinifera HOM05D000093 ORTHO05D007434 6.0e-17 89.7 43 93.0
Medtr6g069000 Medicago truncatula HOM05D000093 ORTHO05D007434 1.0e-16 89.0 43 90.7
Hma1.2p1_1807F.1_g303330 Hydrangea macrophylla HOM05D000093 ORTHO05D007434 1.3e-16 88.6 44 88.6
Lj5C168T7 Lonicera japonica HOM05D000093 ORTHO05D007434 1.3e-16 88.6 43 88.4
Oeu057512.1 Olea europaea HOM05D000093 ORTHO05D007434 1.3e-16 88.6 43 88.4
Ca_25285_v3 Cicer arietinum L. HOM05D000093 ORTHO05D007434 2.3e-16 87.8 43 88.4
Eucgr.K02335 Eucalyptus grandis HOM05D000093 ORTHO05D007434 2.3e-16 87.8 43 88.4
Thecc.03G073700 Theobroma cacao HOM05D000093 ORTHO05D007434 2.3e-16 87.8 43 90.7
TPR.G31354 Trifolium pratense HOM05D000093 ORTHO05D007434 2.3e-16 87.8 43 88.4
DCAR_023236 Daucus carota HOM05D000093 ORTHO05D007434 3.0e-16 87.4 42 90.5
Nn4g25058 Nelumbo nucifera HOM05D000093 ORTHO05D007434 3.0e-16 87.4 43 88.4
Lsat_1_v5_gn_8_133361 Lactuca sativa HOM05D000093 ORTHO05D007434 3.9e-16 87.0 43 86.0
THA.LOC104812188 Tarenaya hassleriana HOM05D000093 ORTHO05D007434 3.9e-16 87.0 43 86.0
BcaB03g15051 Brassica carinata HOM05D000093 ORTHO05D007434 5.1e-16 86.7 43 83.7
A07p39310 Brassica napus HOM05D000093 ORTHO05D007434 5.1e-16 86.7 43 83.7
Ciclev10023543m.g Citrus clementina HOM05D000093 ORTHO05D007434 5.1e-16 86.7 43 83.7
Glyma.16G210300 Glycine max HOM05D000093 ORTHO05D007434 5.1e-16 86.7 43 86.0
MD14G1247400 Malus domestica HOM05D000093 ORTHO05D007434 5.1e-16 86.7 43 86.0
Nitab4.5_0008182g0050 Nicotiana tabacum HOM05D000093 ORTHO05D007434 5.1e-16 86.7 43 86.0
Nitab4.5_0009307g0040 Nicotiana tabacum HOM05D000093 ORTHO05D007434 5.1e-16 86.7 43 86.0
Potri.017G154600 Populus trichocarpa HOM05D000093 ORTHO05D007434 5.1e-16 86.7 43 86.0
SalBow5G5704 Salvia bowleyana HOM05D000093 ORTHO05D007434 5.1e-16 86.7 43 86.0
TWI81G0359 Tripterygium wilfordii HOM05D000093 ORTHO05D007434 5.1e-16 86.7 43 88.4
Carub.0002s2008 Capsella rubella HOM05D000093 ORTHO05D007434 6.7e-16 86.3 43 83.7
CAN.G861.20 Capsicum annuum HOM05D000093 ORTHO05D007434 6.7e-16 86.3 43 86.0
Manes.02G213900 Manihot esculenta HOM05D000093 ORTHO05D007434 6.7e-16 86.3 43 88.4
PGSC0003DMG400015278 Solanum tuberosum HOM05D000093 ORTHO05D007434 6.7e-16 86.3 43 86.0
AL2G33110 Arabidopsis lyrata HOM05D000093 ORTHO05D007434 8.7e-16 85.9 43 83.7
AT1G73340 Arabidopsis thaliana HOM05D000093 ORTHO05D007434 8.7e-16 85.9 43 83.7
CARHR066390 Cardamine hirsuta HOM05D000093 ORTHO05D007434 8.7e-16 85.9 43 83.7
MBI03_g11901_MAGBIO Magnolia biondii HOM05D000093 ORTHO05D007434 8.7e-16 85.9 43 86.0
Sp5g28270 Schrenkiella parvula HOM05D000093 ORTHO05D007434 8.7e-16 85.9 43 83.7
Sopen03g029750 Solanum pennellii HOM05D000093 ORTHO05D007434 8.7e-16 85.9 43 83.7
BcaC08g46758 Brassica carinata HOM05D000093 ORTHO05D007434 1.5e-15 85.1 43 81.4
C06p47540 Brassica napus HOM05D000093 ORTHO05D007434 1.5e-15 85.1 43 81.4
CANSAT80G1814 Cannabis sativa HOM05D000093 ORTHO05D007434 1.5e-15 85.1 43 86.0
Glyma.09G160900 Glycine max HOM05D000093 ORTHO05D007434 1.5e-15 85.1 43 86.0
vmacro17758 Vaccinium macrocarpon HOM05D000093 ORTHO05D007434 1.9e-15 84.7 43 83.7
BraA07t31480Z Brassica rapa HOM05D000093 ORTHO05D007434 2.5e-15 84.3 43 83.7
FvH4_5g18610 Fragaria vesca HOM05D000093 ORTHO05D007434 2.5e-15 84.3 43 86.0
FAN08G2723 Fragaria x ananassa HOM05D000093 ORTHO05D007434 2.5e-15 84.3 43 86.0
FAN13G1674 Fragaria x ananassa HOM05D000093 ORTHO05D007434 2.5e-15 84.3 43 86.0
FAN18G2926 Fragaria x ananassa HOM05D000093 ORTHO05D007434 2.5e-15 84.3 43 86.0
Sabra04G0044600 Salix brachista HOM05D000093 ORTHO05D007434 2.5e-15 84.3 43 88.4
MSTRG.11568 Avicennia marina HOM05D000093 ORTHO05D007434 3.3e-15 84.0 43 81.4
PSO063G2239 Papaver somniferum HOM05D000093 ORTHO05D007434 4.3e-15 83.6 43 83.7
PSO782G3143 Papaver somniferum HOM05D000093 ORTHO05D007434 4.3e-15 83.6 43 83.7
Prupe.5G245500 Prunus persica HOM05D000093 ORTHO05D007434 4.3e-15 83.6 43 83.7
Aqoxy3G04337 Aquilegia oxysepala HOM05D000093 ORTHO05D007434 5.7e-15 83.2 43 86.0
HanXRQChr03g0087201 Helianthus annuus HOM05D000093 ORTHO05D007434 5.7e-15 83.2 43 79.1
Thhalv10018455m.g Eutrema salsugineum HOM05D000093 ORTHO05D007434 7.4e-15 82.8 43 81.4
Psat1g119000 Pisum sativum HOM05D000093 ORTHO05D007434 7.4e-15 82.8 43 83.7
ECA233G2840 Erigeron canadensis HOM05D000093 ORTHO05D007434 9.6e-15 82.4 42 85.7
Lj2g0006613 Lotus japonicus HOM05D000093 ORTHO05D007434 9.6e-15 82.4 43 83.7
RcHm_v2.0_Chr7g0176891 Rosa chinensis HOM05D000093 ORTHO05D007434 9.6e-15 82.4 43 83.7
BolC6t39792H Brassica oleracea HOM05D000093 ORTHO05D007434 1.3e-14 82.0 43 79.1
Sed0025784 Sechium edule HOM05D000093 ORTHO05D007434 1.3e-14 82.0 43 81.4
CiPaw.15G108000 Carya illinoinensis HOM05D000093 ORTHO05D007434 1.6e-14 81.6 41 87.8
Peaxi162Scf00171g00050 Petunia axillaris HOM05D000093 ORTHO05D007434 1.6e-14 81.6 43 83.7
Solyc03g019870.4 Solanum lycopersicum HOM05D000093 ORTHO05D007434 1.6e-14 81.6 43 79.1
SGA_v2.0_scaffold25G10725 Striga asiatica HOM05D000093 ORTHO05D007434 2.8e-14 80.9 43 79.1
FAN04G0630 Fragaria x ananassa HOM05D000093 ORTHO05D007434 4.8e-14 80.1 43 88.4
Aa31LG4G3610 Aethionema arabicum HOM05D000093 ORTHO05D007434 6.2e-14 79.7 43 79.1
Migut.O00285 Erythranthe guttata HOM05D000093 ORTHO05D007434 6.2e-14 79.7 43 76.7
CsaV3_6G000290 Cucumis sativus L. HOM05D000093 ORTHO05D007434 1.8e-13 78.2 43 74.4
arahy.Tifrunner.gnm1.ann1.TD0XWT Arachis hypogaea HOM05D000093 ORTHO05D007434 2.6e-12 74.3 43 76.7
Glyma.01G047300 Glycine max HOM05D003373 ORTHO05D004419 5.5e-10 66.6 30 90.0
Cc00_g04730 Coffea canephora HOM05D000093 ORTHO05D007434 2.1e-09 64.7 32 84.4
Glyma.01G122300 Glycine max HOM05D003373 ORTHO05D004419 8.7e-08 59.3 30 83.3
Sc07g0000890 Simmondsia chinensis HOM05D000093 ORTHO05D000605 2.5e-07 57.8 36 66.7
COL.COLO4_15496 Corchorus olitorius HOM05D000093 ORTHO05D001309 7.4e-07 56.2 32 68.8
SEGI_15448 Sequoiadendron giganteum HOM05D000093 ORTHO05D007434 7.4e-07 56.2 36 58.3
Dinv16175 Davidia involucrata HOM05D000093 ORTHO05D001309 1.3e-06 55.5 32 62.5
Dinv16178 Davidia involucrata HOM05D000093 ORTHO05D001309 1.3e-06 55.5 32 62.5
Dinv16182 Davidia involucrata HOM05D000093 ORTHO05D001309 1.3e-06 55.5 32 62.5
Sed0015159 Sechium edule HOM05D000093 ORTHO05D000605 1.3e-06 55.5 32 68.8
SEGI_11906 Sequoiadendron giganteum HOM05D000093 ORTHO05D007434 1.3e-06 55.5 36 58.3
SEGI_28947 Sequoiadendron giganteum HOM05D000093 ORTHO05D000605 1.3e-06 55.5 35 65.7
COL.COLO4_17078 Corchorus olitorius HOM05D000093 ORTHO05D001309 1.6e-06 55.1 32 65.6
COL.COLO4_17081 Corchorus olitorius HOM05D000093 ORTHO05D001309 1.6e-06 55.1 32 65.6
CAN.G201.14 Capsicum annuum HOM05D000093 ORTHO05D001309 2.2e-06 54.7 32 68.8
CDE04G0332 Ceratophyllum demersum HOM05D000093 ORTHO05D002784 2.2e-06 54.7 41 53.7
Ciclev10031341m.g Citrus clementina HOM05D000093 ORTHO05D001309 2.2e-06 54.7 32 62.5
Gohir.A08G158350 Gossypium hirsutum HOM05D000093 ORTHO05D001309 2.2e-06 54.7 42 52.4
AUR62007630 Chenopodium quinoa HOM05D000093 ORTHO05D000605 2.8e-06 54.3 36 61.1
Eucgr.J02384 Eucalyptus grandis HOM05D000093 ORTHO05D000605 2.8e-06 54.3 32 65.6
EL10As8g23877 Beta vulgaris HOM05D000093 ORTHO05D000605 3.7e-06 53.9 32 65.6
CAN.G845.32 Capsicum annuum HOM05D000093 ORTHO05D001309 3.7e-06 53.9 32 65.6
Cpa.g.sc133.11 Carica papaya HOM05D000093 ORTHO05D001309 3.7e-06 53.9 32 62.5
Migut.H02504 Erythranthe guttata HOM05D000093 ORTHO05D000605 3.7e-06 53.9 36 61.1
Hma1.2p1_0114F.1_g055380 Hydrangea macrophylla HOM05D000093 ORTHO05D001309 3.7e-06 53.9 32 62.5
PGR102G1321 Punica granatum HOM05D000093 ORTHO05D000605 3.7e-06 53.9 32 65.6
Sed0002600 Sechium edule HOM05D000093 ORTHO05D001309 3.7e-06 53.9 32 65.6
Solyc08g007050.2 Solanum lycopersicum HOM05D000093 ORTHO05D001309 3.7e-06 53.9 32 65.6
PGSC0003DMG400020499 Solanum tuberosum HOM05D000093 ORTHO05D001309 3.7e-06 53.9 32 65.6
Cpa.g.sc130.65 Carica papaya HOM05D000093 ORTHO05D000605 4.8e-06 53.5 31 71.0
Cfa007325 Carpinus fangiana HOM05D000093 ORTHO05D000605 4.8e-06 53.5 31 71.0
Cc07_g00100 Coffea canephora HOM05D000093 ORTHO05D000605 4.8e-06 53.5 31 67.7
Cc07_g10170 Coffea canephora HOM05D000093 ORTHO05D000605 4.8e-06 53.5 36 61.1
COL.COLO4_28433 Corchorus olitorius HOM05D000093 ORTHO05D001309 4.8e-06 53.5 32 62.5
Haze_14772 Corylus avellana HOM05D000093 ORTHO05D000605 4.8e-06 53.5 31 71.0
MELO3C031942.2 Cucumis melo HOM05D000093 ORTHO05D001309 4.8e-06 53.5 36 61.1
Duzib068G1004 Durio zibethinus HOM05D000093 ORTHO05D001309 4.8e-06 53.5 32 65.6
Nn1g08398 Nelumbo nucifera HOM05D000093 ORTHO05D000605 4.8e-06 53.5 32 65.6
Oeu020234.1 Olea europaea HOM05D000093 ORTHO05D001309 4.8e-06 53.5 32 65.6
Rhsim07G0042400 Rhododendron simsii HOM05D000093 ORTHO05D001309 4.8e-06 53.5 32 65.6
SHI03448 Sapria himalayana HOM05D000093 ORTHO05D000605 4.8e-06 53.5 32 62.5
TPR.G33361 Trifolium pratense HOM05D000093 ORTHO05D000605 4.8e-06 53.5 32 62.5
MSTRG.20644 Avicennia marina HOM05D000093 ORTHO05D001309 6.3e-06 53.1 32 62.5
MSTRG.23265 Avicennia marina HOM05D000093 ORTHO05D000605 6.3e-06 53.1 36 58.3
Cpa.g.sc6.188 Carica papaya HOM05D000093 ORTHO05D000605 6.3e-06 53.1 32 62.5
CDE07G1330 Ceratophyllum demersum HOM05D000093 ORTHO05D002784 6.3e-06 53.1 41 51.2
ClCG00G001910 Citrullus lanatus HOM05D000093 ORTHO05D000605 6.3e-06 53.1 31 71.0
ClCG01G019980 Citrullus lanatus HOM05D000093 ORTHO05D000605 6.3e-06 53.1 32 65.6
MELO3C021600.2 Cucumis melo HOM05D000093 ORTHO05D000605 6.3e-06 53.1 31 71.0
Duzib068G0597 Durio zibethinus HOM05D000093 ORTHO05D001309 6.3e-06 53.1 30 66.7
Duzib205G1568 Durio zibethinus HOM05D000093 ORTHO05D001309 6.3e-06 53.1 32 62.5
Gohir.A08G158500 Gossypium hirsutum HOM05D000093 ORTHO05D001309 6.3e-06 53.1 32 62.5
Gohir.D08G178900 Gossypium hirsutum HOM05D000093 ORTHO05D001309 6.3e-06 53.1 32 62.5
Gorai.004G187300 Gossypium raimondii HOM05D000093 ORTHO05D001309 6.3e-06 53.1 32 62.5
Lj2g0001294 Lotus japonicus HOM05D000093 ORTHO05D000605 6.3e-06 53.1 32 62.5
Medtr8g089800 Medicago truncatula HOM05D000093 ORTHO05D001309 6.3e-06 53.1 32 62.5
Nitab4.5_0007026g0070 Nicotiana tabacum HOM05D000093 ORTHO05D001309 6.3e-06 53.1 32 65.6
SEGI_04215 Sequoiadendron giganteum HOM05D000093 ORTHO05D000605 6.3e-06 53.1 32 59.4
Thecc.03G231900 Theobroma cacao HOM05D000093 ORTHO05D001309 6.3e-06 53.1 32 62.5
TAR629G0367 Trochodendron aralioides HOM05D000093 ORTHO05D000605 6.3e-06 53.1 31 71.0
MSTRG.2495 Avicennia marina HOM05D000093 ORTHO05D000605 8.2e-06 52.8 36 58.3
CAN.G1551.6 Capsicum annuum HOM05D000093 ORTHO05D001309 8.2e-06 52.8 32 62.5
Cpa.g.sc133.25 Carica papaya HOM05D000093 ORTHO05D001309 8.2e-06 52.8 32 59.4
CDE02G0792 Ceratophyllum demersum HOM05D000093 ORTHO05D001309 8.2e-06 52.8 32 62.5
ClCG10G001830 Citrullus lanatus HOM05D006861 ORTHO05D008620 8.2e-06 52.8 32 62.5
Ciclev10019986m.g Citrus clementina HOM05D000093 ORTHO05D001309 8.2e-06 52.8 32 62.5
MELO3C013867.2 Cucumis melo HOM05D000093 ORTHO05D001309 8.2e-06 52.8 32 59.4
CsaV3_3G001930 Cucumis sativus L. HOM05D000093 ORTHO05D001309 8.2e-06 52.8 32 59.4
Eucgr.D02177 Eucalyptus grandis HOM05D000093 ORTHO05D001309 8.2e-06 52.8 32 56.2
Lalb_Chr24g0403501 Lupinus albus HOM05D000093 ORTHO05D000605 8.2e-06 52.8 31 67.7
Nitab4.5_0000723g0080 Nicotiana tabacum HOM05D000093 ORTHO05D000605 8.2e-06 52.8 36 58.3
Nitab4.5_0003460g0020 Nicotiana tabacum HOM05D000093 ORTHO05D000605 8.2e-06 52.8 36 58.3
Peaxi162Scf00084g01113 Petunia axillaris HOM05D000093 ORTHO05D000605 8.2e-06 52.8 36 58.3
Peaxi162Scf00268g00310 Petunia axillaris HOM05D000093 ORTHO05D001309 8.2e-06 52.8 32 65.6
Peaxi162Scf00901g00321 Petunia axillaris HOM05D000093 ORTHO05D001309 8.2e-06 52.8 32 62.5
QL06p034805 Quercus lobata HOM05D000093 ORTHO05D000605 8.2e-06 52.8 33 60.6
QL10p007397 Quercus lobata HOM05D000093 ORTHO05D000605 8.2e-06 52.8 33 60.6
Sed0024494 Sechium edule HOM05D000093 ORTHO05D000605 8.2e-06 52.8 32 62.5
Hund14014 Selenicereus undatus HOM05D000093 ORTHO05D000605 8.2e-06 52.8 36 61.1
SEGI_32128 Sequoiadendron giganteum HOM05D000093 ORTHO05D000605 8.2e-06 52.8 36 58.3
Sopen01g032490 Solanum pennellii HOM05D000093 ORTHO05D001309 8.2e-06 52.8 32 62.5
TPR.G1127 Trifolium pratense HOM05D000093 ORTHO05D000605 8.2e-06 52.8 31 67.7
TAR629G2488 Trochodendron aralioides HOM05D000093 ORTHO05D001309 8.2e-06 52.8 32 65.6


User provided reference genes

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