Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc622.1 Carica papaya HOM05D006259 ORTHO05D007804 6.3e-211 737.3 394 100.0
THA.LOC104811875 Tarenaya hassleriana HOM05D006259 ORTHO05D007804 2.2e-126 456.4 399 64.9
Prupe.4G176500 Prunus persica HOM05D006259 ORTHO05D007804 2.5e-122 443.0 322 70.5
MD11G1252500 Malus domestica HOM05D006259 ORTHO05D007804 5.5e-122 441.8 319 69.6
Cfa020561 Carpinus fangiana HOM05D006259 ORTHO05D007804 1.3e-120 437.2 385 61.8
QL08p022713 Quercus lobata HOM05D006259 ORTHO05D007804 7.4e-119 431.4 388 64.2
TWI39G0898 Tripterygium wilfordii HOM05D006259 ORTHO05D007804 1.4e-117 427.2 313 69.0
CARHR267060 Cardamine hirsuta HOM05D006259 ORTHO05D007804 6.9e-117 424.9 395 57.7
Manes.15G089200 Manihot esculenta HOM05D006259 ORTHO05D007804 1.2e-116 424.1 316 69.0
FvH4_3g19490 Fragaria vesca HOM05D006259 ORTHO05D007804 4.5e-116 422.2 317 66.6
Haze_09453 Corylus avellana HOM05D006259 ORTHO05D007804 7.7e-116 421.4 377 60.2
Potri.011G116100 Populus trichocarpa HOM05D006259 ORTHO05D007804 7.7e-116 421.4 393 63.1
RcHm_v2.0_Chr5g0032751 Rosa chinensis HOM05D006259 ORTHO05D007804 2.2e-115 419.9 322 65.8
BcaB05g22091 Brassica carinata HOM05D006259 ORTHO05D007804 2.9e-115 419.5 394 55.8
Carub.0008s1423 Capsella rubella HOM05D006259 ORTHO05D007804 8.5e-115 417.9 397 56.2
Sp6g16000 Schrenkiella parvula HOM05D006259 ORTHO05D007804 1.1e-114 417.5 394 55.6
Thhalv10015851m.g Eutrema salsugineum HOM05D006259 ORTHO05D007804 3.2e-114 416.0 389 56.8
Dinv20198 Davidia involucrata HOM05D006259 ORTHO05D007804 9.4e-114 414.5 303 70.6
vmacro11886 Vaccinium macrocarpon HOM05D006259 ORTHO05D007804 9.4e-114 414.5 389 57.8
CSS0047365 Camellia sinensis var. sinensis HOM05D006259 ORTHO05D007804 1.2e-113 414.1 395 58.7
AT5G53920 Arabidopsis thaliana HOM05D006259 ORTHO05D007804 1.6e-113 413.7 393 58.5
FAN11G4033 Fragaria x ananassa HOM05D006259 ORTHO05D007804 2.1e-113 413.3 317 65.9
CSS0047678 Camellia sinensis var. sinensis HOM05D006259 ORTHO05D007804 3.6e-113 412.5 395 58.0
AL8G29030 Arabidopsis lyrata HOM05D006259 ORTHO05D007804 6.1e-113 411.8 387 57.1
CiPaw.11G171900 Carya illinoinensis HOM05D006259 ORTHO05D007804 7.9e-113 411.4 378 59.0
Ciclev10008595m.g Citrus clementina HOM05D006259 ORTHO05D007804 1.0e-112 411.0 313 67.1
Duzib268G0576 Durio zibethinus HOM05D006259 ORTHO05D007804 6.7e-112 408.3 389 58.6
Gorai.009G375900 Gossypium raimondii HOM05D006259 ORTHO05D007804 6.7e-112 408.3 313 65.8
CANSAT56G1257 Cannabis sativa HOM05D006259 ORTHO05D007804 2.0e-111 406.8 315 66.3
Sabra11G0101700 Salix brachista HOM05D006259 ORTHO05D007804 2.0e-111 406.8 420 54.0
GSVIVG01014295001 Vitis vinifera HOM05D006259 ORTHO05D007804 1.3e-110 404.1 314 66.6
Aqoxy1G02333 Aquilegia oxysepala HOM05D006259 ORTHO05D007804 1.7e-110 403.7 311 64.0
MSTRG.15241 Avicennia marina HOM05D006259 ORTHO05D007804 4.8e-110 402.1 315 62.5
BcaC03g14368 Brassica carinata HOM05D006259 ORTHO05D007804 3.1e-109 399.4 397 53.9
A02p10700 Brassica napus HOM05D006259 ORTHO05D007804 3.1e-109 399.4 397 54.9
Ciclev10010717m.g Citrus clementina HOM05D006259 ORTHO05D007804 1.3e-107 394.0 312 65.4
C02p17820 Brassica napus HOM05D006259 ORTHO05D007804 2.9e-107 392.9 410 52.7
Nitab4.5_0002330g0080 Nicotiana tabacum HOM05D006259 ORTHO05D007804 2.9e-107 392.9 395 54.9
Migut.M00783 Erythranthe guttata HOM05D006259 ORTHO05D007804 3.8e-107 392.5 317 62.1
BolC2t07911H Brassica oleracea HOM05D006259 ORTHO05D007804 5.0e-107 392.1 412 52.4
Lj8A154G76 Lonicera japonica HOM05D006259 ORTHO05D007804 5.0e-107 392.1 323 62.2
TAR629G2204 Trochodendron aralioides HOM05D006259 ORTHO05D007804 1.1e-106 391.0 302 65.9
BraA02t06133Z Brassica rapa HOM05D006259 ORTHO05D007804 1.4e-106 390.6 405 53.8
Nitab4.5_0005017g0010 Nicotiana tabacum HOM05D006259 ORTHO05D007804 2.5e-106 389.8 390 54.1
Cc05_g11780 Coffea canephora HOM05D006259 ORTHO05D007804 7.2e-106 388.3 326 62.6
Sopen07g031120 Solanum pennellii HOM05D006259 ORTHO05D007804 1.6e-105 387.1 315 63.2
Thecc.07G095600 Theobroma cacao HOM05D006259 ORTHO05D007804 2.7e-105 386.3 298 67.1
Lalb_Chr19g0134121 Lupinus albus HOM05D006259 ORTHO05D007804 8.0e-105 384.8 409 52.1
Solyc07g062930.3 Solanum lycopersicum HOM05D006259 ORTHO05D007804 1.0e-104 384.4 315 63.8
Glyma.06G237700 Glycine max HOM05D006259 ORTHO05D007804 1.1e-103 380.9 314 61.8
Duzib244G0007 Durio zibethinus HOM05D006259 ORTHO05D007804 1.5e-103 380.6 389 55.3
SGA_v2.0_scaffold73G24236 Striga asiatica HOM05D006259 ORTHO05D007804 1.5e-103 380.6 387 52.2
Sed0019446 Sechium edule HOM05D006259 ORTHO05D007804 2.6e-103 379.8 314 61.8
Phvul.011G163100 Phaseolus vulgaris HOM05D006259 ORTHO05D007804 3.7e-102 375.9 314 59.9
ClCG11G017880 Citrullus lanatus HOM05D006259 ORTHO05D007804 4.8e-102 375.6 316 61.7
Sc16g0007160 Simmondsia chinensis HOM05D006259 ORTHO05D007804 4.8e-102 375.6 319 60.5
Peaxi162Scf00069g01731 Petunia axillaris HOM05D006259 ORTHO05D007804 1.1e-101 374.4 383 53.0
CsaV3_4G033510 Cucumis sativus L. HOM05D006259 ORTHO05D007804 1.4e-101 374.0 314 61.8
HanXRQChr11g0351981 Helianthus annuus HOM05D006259 ORTHO05D007804 1.4e-101 374.0 381 53.8
FAN16G3026 Fragaria x ananassa HOM05D006259 ORTHO05D007804 1.8e-101 373.6 357 57.7
Aa31LG3G10030 Aethionema arabicum HOM05D006259 ORTHO05D007804 9.1e-101 371.3 385 51.7
FAN25G1146 Fragaria x ananassa HOM05D006259 ORTHO05D007804 1.2e-100 370.9 286 66.4
Medtr8g058780 Medicago truncatula HOM05D006259 ORTHO05D007804 1.6e-100 370.5 313 57.5
Medtr8g061260 Medicago truncatula HOM05D006259 ORTHO05D007804 1.6e-100 370.5 313 57.5
VMungo1127G0077 Vigna mungo HOM05D006259 ORTHO05D007804 1.6e-100 370.5 392 51.3
PGR083G2616 Punica granatum HOM05D006259 ORTHO05D007804 3.5e-100 369.4 360 57.5
Lj3g0016272 Lotus japonicus HOM05D006259 ORTHO05D007804 4.5e-100 369.0 405 51.9
DCAR_017124 Daucus carota HOM05D006259 ORTHO05D007804 1.7e-99 367.1 316 60.1
TPR.G32110 Trifolium pratense HOM05D006259 ORTHO05D007804 2.2e-99 366.7 316 57.0
MELO3C025605.2 Cucumis melo HOM05D006259 ORTHO05D007804 3.8e-99 365.9 314 60.8
Hund02234 Selenicereus undatus HOM05D006259 ORTHO05D007804 1.5e-98 364.0 313 59.4
ECA236G1201 Erigeron canadensis HOM05D006259 ORTHO05D007804 1.9e-98 363.6 318 59.7
Lsat_1_v5_gn_7_104661 Lactuca sativa HOM05D006259 ORTHO05D007804 2.5e-98 363.2 384 52.3
FAN21G1610 Fragaria x ananassa HOM05D006259 ORTHO05D007804 3.2e-98 362.8 388 55.9
ATR0150G016 Amborella trichopoda HOM05D006259 ORTHO05D007804 2.7e-97 359.8 313 57.2
EL10Ac4g08228 Beta vulgaris HOM05D006259 ORTHO05D007804 8.0e-97 358.2 389 51.7
arahy.Tifrunner.gnm1.ann1.KCB6L6 Arachis hypogaea HOM05D006259 ORTHO05D007804 1.8e-96 357.1 417 47.2
Eucgr.F01160 Eucalyptus grandis HOM05D006259 ORTHO05D007804 8.8e-96 354.8 280 63.2
Psat4g178120 Pisum sativum HOM05D006259 ORTHO05D007804 1.2e-95 354.4 394 49.0
arahy.Tifrunner.gnm1.ann1.J8ZMQ9 Arachis hypogaea HOM05D006259 ORTHO05D007804 2.6e-95 353.2 424 46.9
Ah.04g164700 Amaranthus hybridus HOM05D006259 ORTHO05D007804 4.4e-95 352.4 312 59.0
AUR62019461 Chenopodium quinoa HOM05D006259 ORTHO05D007804 3.7e-94 349.4 404 50.2
Rhsim06G0201700 Rhododendron simsii HOM05D006259 ORTHO05D007804 1.2e-92 344.4 329 56.8
CAN.G162.38 Capsicum annuum HOM05D006259 ORTHO05D007804 3.8e-91 339.3 296 58.8
Gohir.A04G035300 Gossypium hirsutum HOM05D006259 ORTHO05D007804 1.9e-90 337.0 313 56.9
Oeu025362.1 Olea europaea HOM05D006259 ORTHO05D007804 1.6e-89 334.0 391 48.1
HPP92_017550 Vanilla planifolia HOM05D006259 ORTHO05D007804 2.1e-89 333.6 311 56.3
PSO541G2103 Papaver somniferum HOM05D006259 ORTHO05D007804 3.6e-89 332.8 292 62.7
Atru.chr2.2422 Acer truncatum HOM05D006259 ORTHO05D007804 7.5e-87 325.1 233 70.0
CDE05G3386 Ceratophyllum demersum HOM05D006259 ORTHO05D007804 1.7e-86 323.9 298 56.0
PSO675G6900 Papaver somniferum HOM05D006259 ORTHO05D007804 2.8e-86 323.2 281 62.3
Gohir.D05G348100 Gossypium hirsutum HOM05D006259 ORTHO05D007804 1.1e-85 321.2 238 67.6
Os05g0497675 Oryza sativa ssp. japonica HOM05D006259 ORTHO05D007804 4.1e-85 319.3 321 50.2
Nn1g06450 Nelumbo nucifera HOM05D006259 ORTHO05D007804 7.7e-84 315.1 313 54.0
unitig_46.g18320 Utricularia gibba HOM05D006259 ORTHO05D007804 1.0e-83 314.7 295 56.3
Mapoly0161s0032 Marchantia polymorpha HOM05D006259 ORTHO05D007804 1.5e-82 310.8 346 49.4
Pp3c22_15620 Physcomitrium patens HOM05D006259 ORTHO05D007804 1.8e-77 293.9 331 46.5
arahy.Tifrunner.gnm1.ann1.JJTS0M Arachis hypogaea HOM05D006259 ORTHO05D007804 3.6e-73 279.6 257 56.0
arahy.Tifrunner.gnm1.ann1.IZH9YM Arachis hypogaea HOM05D006259 ORTHO05D007804 6.1e-73 278.9 220 61.4
AagrBONN_evm.TU.Sc2ySwM_362.1898 Anthoceros agrestis HOM05D006259 ORTHO05D007804 9.8e-71 271.6 342 43.3
Hma1.2p1_1411F.1_g281740 Hydrangea macrophylla HOM05D006259 ORTHO05D007804 1.2e-63 248.1 189 69.8
Actinidia09701 Actinidia chinensis HOM05D006259 ORTHO05D007804 8.1e-57 225.3 172 64.5
COL.COLO4_36712 Corchorus olitorius HOM05D006259 ORTHO05D007804 1.5e-55 221.1 251 51.0
AUR62036169 Chenopodium quinoa HOM05D006259 ORTHO05D007804 9.9e-47 191.8 245 45.7
Zm00001eb352610 Zea mays HOM05D006259 ORTHO05D007804 2.9e-46 190.3 180 51.7
Cre09.g396735 Chlamydomonas reinhardtii HOM05D006259 ORTHO05D007804 1.4e-45 188.0 320 36.9
SMO230G0105 Selaginella moellendorffii HOM05D006259 ORTHO05D007804 3.2e-45 186.8 198 49.5
MCO08G332 Micromonas commoda HOM05D006259 ORTHO05D007804 6.6e-43 179.1 311 36.7
PRCOL_00006646 Prasinoderma coloniale HOM05D006259 ORTHO05D007804 2.8e-41 173.7 333 33.3
arahy.Tifrunner.gnm1.ann1.NGC2LD Arachis hypogaea HOM05D006259 ORTHO05D007804 8.1e-41 172.2 262 37.8
arahy.Tifrunner.gnm1.ann1.Y39XKR Arachis hypogaea HOM05D006259 ORTHO05D007804 5.3e-40 169.5 189 47.6
MBI18_g48079_MAGBIO Magnolia biondii HOM05D006259 ORTHO05D007804 5.3e-40 169.5 146 58.9
arahy.Tifrunner.gnm1.ann1.N67PK3 Arachis hypogaea HOM05D006259 ORTHO05D007804 1.5e-39 167.9 298 34.9
arahy.Tifrunner.gnm1.ann1.88153A Arachis hypogaea HOM05D006259 ORTHO05D007804 8.4e-38 162.2 264 36.0
arahy.Tifrunner.gnm1.ann1.UFBT31 Arachis hypogaea HOM05D006259 ORTHO05D007804 8.4e-38 162.2 255 37.3
Thecc.02G165400 Theobroma cacao HOM05D006259 ORTHO05D007804 1.4e-37 161.4 119 69.7
PRCOL_00002790 Prasinoderma coloniale HOM05D006259 ORTHO05D007804 2.3e-35 154.1 247 36.4
arahy.Tifrunner.gnm1.ann1.SB88KA Arachis hypogaea HOM05D006259 ORTHO05D007804 4.3e-34 149.8 292 31.8
arahy.Tifrunner.gnm1.ann1.LRZU8J Arachis hypogaea HOM05D006259 ORTHO05D007804 1.3e-33 148.3 252 36.5
arahy.Tifrunner.gnm1.ann1.H7I8JY Arachis hypogaea HOM05D006259 ORTHO05D007804 6.9e-32 142.5 148 48.0
COL.COLO4_00923 Corchorus olitorius HOM05D006259 ORTHO05D007804 3.4e-31 140.2 291 30.9
arahy.Tifrunner.gnm1.ann1.5V52A0 Arachis hypogaea HOM05D006259 ORTHO05D007804 3.8e-30 136.7 136 48.5
HPP92_017577 Vanilla planifolia HOM05D006259 ORTHO05D007804 2.1e-28 131.0 194 40.7
PRCOL_00002336 Prasinoderma coloniale HOM05D006259 ORTHO05D007804 4.5e-23 113.2 207 33.3
Duzib213G0106 Durio zibethinus HOM05D006259 ORTHO05D007804 1.2e-20 105.1 111 48.6
Atru.chr2.2423 Acer truncatum HOM05D006259 ORTHO05D007804 1.3e-14 85.1 137 42.3
arahy.Tifrunner.gnm1.ann1.69KWVE Arachis hypogaea HOM05D007267 ORTHO05D009053 3.4e-07 60.5 57 50.9
arahy.Tifrunner.gnm1.ann1.BBFR3C Arachis hypogaea HOM05D003566 ORTHO05D009053 7.7e-07 59.3 59 49.2


User provided reference genes

Program Settings