Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc62.97 Carica papaya HOM05D001401 ORTHO05D006368 3.0e-166 588.6 325 100.0
Thecc.02G031200 Theobroma cacao HOM05D001401 ORTHO05D006368 9.2e-83 311.2 332 59.3
Duzib132G0928 Durio zibethinus HOM05D001401 ORTHO05D006368 1.7e-76 290.4 330 57.9
Ciclev10028944m.g Citrus clementina HOM05D001401 ORTHO05D006368 2.4e-75 286.6 327 51.4
THA.LOC104807334 Tarenaya hassleriana HOM05D001401 ORTHO05D006368 2.7e-74 283.1 324 51.2
AT2G16070 Arabidopsis thaliana HOM05D001401 ORTHO05D006368 1.5e-72 277.3 332 52.4
CiPaw.05G060100 Carya illinoinensis HOM05D001401 ORTHO05D006368 9.6e-72 274.6 328 52.1
Gorai.002G213800 Gossypium raimondii HOM05D001401 ORTHO05D006368 9.6e-72 274.6 331 51.7
Sp3g29340 Schrenkiella parvula HOM05D001401 ORTHO05D006368 9.6e-72 274.6 337 51.9
Gohir.D01G172200 Gossypium hirsutum HOM05D001401 ORTHO05D006368 3.6e-71 272.7 331 51.7
Carub.0003s2988 Capsella rubella HOM05D001401 ORTHO05D006368 6.2e-71 271.9 329 50.5
Aa31LG8G13520 Aethionema arabicum HOM05D001401 ORTHO05D006368 1.8e-70 270.4 332 50.9
Gohir.A01G181100 Gossypium hirsutum HOM05D001401 ORTHO05D006368 1.8e-70 270.4 331 51.4
Duzib248G1632 Durio zibethinus HOM05D001401 ORTHO05D006368 5.2e-70 268.9 355 49.3
Potri.004G149900 Populus trichocarpa HOM05D001401 ORTHO05D006368 5.2e-70 268.9 325 48.6
Manes.17G098401 Manihot esculenta HOM05D001401 ORTHO05D006368 1.2e-69 267.7 329 51.4
Potri.009G111000 Populus trichocarpa HOM05D001401 ORTHO05D006368 1.2e-69 267.7 325 48.9
Manes.15G147100 Manihot esculenta HOM05D001401 ORTHO05D006368 1.5e-69 267.3 332 48.5
Sabra09G0084600 Salix brachista HOM05D001401 ORTHO05D006368 9.9e-69 264.6 323 50.2
CARHR106370 Cardamine hirsuta HOM05D001401 ORTHO05D006368 1.3e-68 264.2 326 50.9
Thhalv10022794m.g Eutrema salsugineum HOM05D001401 ORTHO05D006368 2.2e-68 263.5 324 53.4
QL11p037824 Quercus lobata HOM05D001401 ORTHO05D006368 1.1e-67 261.2 365 48.5
A07p04770 Brassica napus HOM05D001401 ORTHO05D006368 1.4e-67 260.8 327 51.4
BraA07t28264Z Brassica rapa HOM05D001401 ORTHO05D006368 1.4e-67 260.8 327 51.4
C07p07640 Brassica napus HOM05D001401 ORTHO05D006368 4.2e-67 259.2 327 53.5
BolC7t41185H Brassica oleracea HOM05D001401 ORTHO05D006368 4.2e-67 259.2 327 53.5
FAN20G2914 Fragaria x ananassa HOM05D001401 ORTHO05D006368 4.2e-67 259.2 325 49.5
MD05G1071000 Malus domestica HOM05D001401 ORTHO05D006368 1.2e-66 257.7 325 52.9
Actinidia27915 Actinidia chinensis HOM05D001401 ORTHO05D006368 1.6e-66 257.3 325 52.9
Haze_02430 Corylus avellana HOM05D001401 ORTHO05D006368 2.7e-66 256.5 325 50.5
vmacro02151 Vaccinium macrocarpon HOM05D001401 ORTHO05D006368 2.7e-66 256.5 325 51.7
BcaC01g03041 Brassica carinata HOM05D001401 ORTHO05D006368 3.5e-66 256.1 336 51.5
C03p56790 Brassica napus HOM05D001401 ORTHO05D006368 3.5e-66 256.1 336 51.5
BolC3t17961H Brassica oleracea HOM05D001401 ORTHO05D006368 3.5e-66 256.1 336 51.5
RcHm_v2.0_Chr6g0262181 Rosa chinensis HOM05D001401 ORTHO05D006368 7.8e-66 255.0 325 47.4
Phvul.011G048500 Phaseolus vulgaris HOM05D001401 ORTHO05D006368 1.7e-65 253.8 330 48.8
TAR381G0019 Trochodendron aralioides HOM05D001401 ORTHO05D006368 1.9e-64 250.4 325 47.1
VMungo1127G1180 Vigna mungo HOM05D001401 ORTHO05D006368 1.9e-64 250.4 330 47.6
TAR628G1386 Trochodendron aralioides HOM05D001401 ORTHO05D006368 9.6e-64 248.1 325 48.0
Hma1.2p1_0584F.1_g183440 Hydrangea macrophylla HOM05D001401 ORTHO05D006368 1.6e-63 247.3 325 49.2
Glyma.12G046700 Glycine max HOM05D001401 ORTHO05D006368 3.6e-63 246.1 329 47.4
TWI31G0569 Tripterygium wilfordii HOM05D001401 ORTHO05D002222 3.6e-63 246.1 330 46.4
BcaB08g34633 Brassica carinata HOM05D001401 ORTHO05D006368 4.8e-63 245.7 328 51.2
Atru.chr5.2919 Acer truncatum HOM05D001401 ORTHO05D006368 8.1e-63 245.0 313 50.8
Sabra04G0099700 Salix brachista HOM05D001401 ORTHO05D006368 8.1e-63 245.0 375 42.9
BraA03t13701Z Brassica rapa HOM05D001401 ORTHO05D006368 1.8e-62 243.8 326 51.8
COL.COLO4_17797 Corchorus olitorius HOM05D000370 ORTHO05D001335 1.8e-62 243.8 296 49.7
Glyma.11G121600 Glycine max HOM05D001401 ORTHO05D006368 1.8e-62 243.8 333 47.1
MELO3C021952.2 Cucumis melo HOM05D001401 ORTHO05D002222 2.4e-62 243.4 324 46.6
A03p45690 Brassica napus HOM05D001401 ORTHO05D006368 3.1e-62 243.0 326 51.5
Prupe.8G107000 Prunus persica HOM05D001401 ORTHO05D006368 3.1e-62 243.0 325 51.4
TWI75G1696 Tripterygium wilfordii HOM05D001401 ORTHO05D006368 4.0e-62 242.7 326 47.2
PSO700G0268 Papaver somniferum HOM05D001401 ORTHO05D006368 1.5e-61 240.7 326 47.5
BcaC06g36113 Brassica carinata HOM05D001401 ORTHO05D006368 2.6e-61 240.0 327 52.9
Lj3g0025450 Lotus japonicus HOM05D001401 ORTHO05D006368 3.4e-61 239.6 334 49.7
Psat7g205720 Pisum sativum HOM05D001401 ORTHO05D006368 9.9e-61 238.0 327 46.8
Sed0001686 Sechium edule HOM05D001401 ORTHO05D006368 9.9e-61 238.0 326 44.5
Dinv42099 Davidia involucrata HOM05D001401 ORTHO05D006368 1.3e-60 237.7 325 49.8
PSO170G2675 Papaver somniferum HOM05D001401 ORTHO05D006368 1.7e-60 237.3 326 46.9
QL11p040047 Quercus lobata HOM05D001401 ORTHO05D006368 2.9e-60 236.5 217 57.6
CsaV3_2G014470 Cucumis sativus L. HOM05D001401 ORTHO05D006368 3.8e-60 236.1 327 45.3
arahy.Tifrunner.gnm1.ann1.U2ETAV Arachis hypogaea HOM05D001401 ORTHO05D006368 4.9e-60 235.7 332 44.6
TWI79G1069 Tripterygium wilfordii HOM05D001401 ORTHO05D002222 3.2e-59 233.0 323 45.8
Hund06213 Selenicereus undatus HOM05D001401 ORTHO05D006368 7.1e-59 231.9 325 45.2
Cfa021516 Carpinus fangiana HOM05D001401 ORTHO05D006368 2.1e-58 230.3 229 53.3
Rhsim11G0172600 Rhododendron simsii HOM05D000554 ORTHO05D002829 3.5e-58 229.6 367 46.6
Lsat_1_v5_gn_5_118161 Lactuca sativa HOM05D001401 ORTHO05D006368 6.0e-58 228.8 327 47.1
Lalb_Chr01g0002831 Lupinus albus HOM05D001401 ORTHO05D006368 2.3e-57 226.9 334 45.2
CANSAT25G1485 Cannabis sativa HOM05D001401 ORTHO05D006368 3.0e-57 226.5 325 47.1
Ca_20836_v3 Cicer arietinum L. HOM05D001401 ORTHO05D006368 6.7e-57 225.3 325 44.3
Nitab4.5_0003816g0020 Nicotiana tabacum HOM05D001401 ORTHO05D006368 8.7e-57 224.9 327 46.2
MSTRG.20113 Avicennia marina HOM05D001401 ORTHO05D006368 1.1e-56 224.6 327 45.9
SalBow6G2648 Salvia bowleyana HOM05D001401 ORTHO05D006368 1.1e-56 224.6 325 46.8
THA.LOC104820173 Tarenaya hassleriana HOM05D001401 ORTHO05D006368 1.1e-56 224.6 338 47.0
Aqoxy6G00969 Aquilegia oxysepala HOM05D001401 ORTHO05D006368 1.9e-56 223.8 325 44.3
Sed0023769 Sechium edule HOM05D001401 ORTHO05D006368 2.5e-56 223.4 326 44.8
Nn5g29458 Nelumbo nucifera HOM05D001401 ORTHO05D006368 1.6e-55 220.7 325 44.0
Oeu034083.1 Olea europaea HOM05D001401 ORTHO05D006368 2.8e-55 219.9 325 45.5
Actinidia00491 Actinidia chinensis HOM05D001401 ORTHO05D006368 6.2e-55 218.8 327 46.8
Cfa021524 Carpinus fangiana HOM05D001401 ORTHO05D002222 6.2e-55 218.8 222 52.3
Dinv23564 Davidia involucrata HOM05D001401 ORTHO05D006368 6.2e-55 218.8 325 47.4
Eucgr.I01238 Eucalyptus grandis HOM05D001401 ORTHO05D006368 6.2e-55 218.8 325 47.1
Lalb_Chr03g0025871 Lupinus albus HOM05D001401 ORTHO05D006368 1.4e-54 217.6 331 45.0
ATR0733G254 Amborella trichopoda HOM05D001401 ORTHO05D006368 1.8e-54 217.2 337 43.9
A09p10890 Brassica napus HOM05D001401 ORTHO05D006368 2.4e-54 216.9 333 47.1
MSTRG.5386 Avicennia marina HOM05D001401 ORTHO05D006368 3.1e-54 216.5 327 47.7
FAN24G0528 Fragaria x ananassa HOM05D001401 ORTHO05D006368 3.1e-54 216.5 325 43.4
FvH4_2g07780 Fragaria vesca HOM05D001401 ORTHO05D006368 9.0e-54 214.9 325 43.4
Medtr4g068880 Medicago truncatula HOM05D001401 ORTHO05D006368 9.0e-54 214.9 326 43.9
AUR62011378 Chenopodium quinoa HOM05D001401 ORTHO05D006368 1.2e-53 214.5 325 42.8
Nitab4.5_0004280g0010 Nicotiana tabacum HOM05D001401 ORTHO05D006368 1.5e-53 214.2 338 43.5
DCAR_029001 Daucus carota HOM05D001401 ORTHO05D006368 3.4e-53 213.0 325 43.7
Hund00301 Selenicereus undatus HOM05D001401 ORTHO05D006368 3.4e-53 213.0 325 41.5
ClCG09G017860 Citrullus lanatus HOM05D001401 ORTHO05D006368 4.5e-53 212.6 327 42.2
ECA234G2696 Erigeron canadensis HOM05D000324 ORTHO05D001014 4.5e-53 212.6 322 45.7
Sed0001319 Sechium edule HOM05D001401 ORTHO05D006368 4.5e-53 212.6 325 41.2
AUR62016681 Chenopodium quinoa HOM05D001401 ORTHO05D006368 2.2e-52 210.3 325 42.2
Cc02_g18020 Coffea canephora HOM05D001401 ORTHO05D006368 4.9e-52 209.1 325 47.7
Peaxi162Scf00016g01140 Petunia axillaris HOM05D001401 ORTHO05D006368 1.4e-51 207.6 324 42.3
FAN15G1840 Fragaria x ananassa HOM05D001401 ORTHO05D006368 3.2e-51 206.5 230 50.0
CSS0017552 Camellia sinensis var. sinensis HOM05D001401 ORTHO05D006368 4.2e-51 206.1 328 46.3
Hund00294 Selenicereus undatus HOM05D001401 ORTHO05D006368 2.1e-50 203.8 314 41.7
Migut.N01216 Erythranthe guttata HOM05D001401 ORTHO05D006368 3.5e-50 203.0 325 44.3
Solyc01g109260.3 Solanum lycopersicum HOM05D001401 ORTHO05D006368 6.7e-49 198.7 327 42.8
Sc08g0000270 Simmondsia chinensis HOM05D001401 ORTHO05D006368 1.5e-48 197.6 326 38.3
Sopen01g051420 Solanum pennellii HOM05D001401 ORTHO05D006368 1.5e-48 197.6 327 42.5
PGSC0003DMG400025176 Solanum tuberosum HOM05D001401 ORTHO05D006368 1.9e-48 197.2 327 42.8
TPR.G28096 Trifolium pratense HOM05D001401 ORTHO05D006368 3.3e-48 196.4 328 43.0
CAN.G322.101 Capsicum annuum HOM05D001401 ORTHO05D006368 4.3e-48 196.1 328 41.8
Medtr0026s0200 Medicago truncatula HOM05D001401 ORTHO05D006368 1.4e-46 191.0 228 48.7
Lj9P365T45 Lonicera japonica HOM05D001401 ORTHO05D006368 5.3e-46 189.1 219 53.0
PSO675G0936 Papaver somniferum HOM05D001401 ORTHO05D006368 9.0e-46 188.3 327 40.1
CsaV3_7G010190 Cucumis sativus L. HOM05D001401 ORTHO05D006368 1.2e-45 188.0 325 37.8
MBI16_g36202_MAGBIO Magnolia biondii HOM05D001401 ORTHO05D002222 1.2e-45 188.0 237 49.4
Oeu027593.1 Olea europaea HOM05D001574 ORTHO05D006368 2.0e-45 187.2 299 43.8
MELO3C018410.2 Cucumis melo HOM05D001401 ORTHO05D006368 2.6e-45 186.8 329 38.0
Ah.01g006390 Amaranthus hybridus HOM05D001401 ORTHO05D006368 3.4e-45 186.4 325 40.3
HanXRQChr10g0307141 Helianthus annuus HOM05D001401 ORTHO05D006368 4.5e-45 186.0 327 41.3
PSO541G5534 Papaver somniferum HOM05D001401 ORTHO05D006368 1.7e-44 184.1 327 39.1
Migut.B00279 Erythranthe guttata HOM05D001401 ORTHO05D006368 3.8e-44 183.0 329 42.6
ClCG02G005370 Citrullus lanatus HOM05D001401 ORTHO05D006368 2.5e-43 180.3 327 38.2
Os07g0123300 Oryza sativa ssp. japonica HOM05D001401 ORTHO05D006368 6.0e-42 175.6 243 43.2
PGR042G1488 Punica granatum HOM05D001401 ORTHO05D006368 1.0e-41 174.9 328 42.7
SGA_v2.0_scaffold58G20583 Striga asiatica HOM05D001401 ORTHO05D006368 4.8e-39 166.0 326 40.2
BcaNung01772 Brassica carinata HOM05D001401 ORTHO05D006368 1.4e-38 164.5 193 52.3
BraA09t36729Z Brassica rapa HOM05D001401 ORTHO05D006368 1.4e-38 164.5 175 58.9
C09p12860 Brassica napus HOM05D001401 ORTHO05D006368 1.8e-38 164.1 328 41.2
BolC9t54175H Brassica oleracea HOM05D001401 ORTHO05D006368 1.8e-38 164.1 328 41.2
CDE01G0160 Ceratophyllum demersum HOM05D001401 ORTHO05D006368 1.3e-36 157.9 328 37.2
Zm00001eb299190 Zea mays HOM05D001401 ORTHO05D006368 4.2e-35 152.9 344 36.9
Ah.01g019700 Amaranthus hybridus HOM05D001401 ORTHO05D002222 1.2e-34 151.4 399 32.6
GSVIVG01031902001 Vitis vinifera HOM05D001401 ORTHO05D006368 2.1e-34 150.6 184 53.8
Nn1g05138 Nelumbo nucifera HOM05D001401 ORTHO05D006368 1.6e-31 141.0 179 49.2
SEGI_00142 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 2.4e-30 137.1 256 39.5
EL10Ac9g21774 Beta vulgaris HOM05D001401 ORTHO05D002222 2.6e-29 133.7 296 37.2
CDE04G2456 Ceratophyllum demersum HOM05D001401 ORTHO05D006368 2.9e-28 130.2 327 33.0
Pp3c2_5300 Physcomitrium patens HOM05D001401 ORTHO05D006368 4.6e-26 122.9 365 32.6
BcaB07g31630 Brassica carinata HOM05D006912 ORTHO05D008686 1.1e-24 118.2 172 44.2
Pp3c1_32220 Physcomitrium patens HOM05D001401 ORTHO05D006368 3.3e-24 116.7 364 34.1
Mapoly0001s0328 Marchantia polymorpha HOM05D001401 ORTHO05D006368 5.7e-24 115.9 364 30.5
TAR623G1717 Trochodendron aralioides HOM05D001401 ORTHO05D006368 1.7e-23 114.4 90 62.2
Pp3c17_18860 Physcomitrium patens HOM05D001401 ORTHO05D006368 1.2e-21 108.2 377 31.3
AagrBONN_evm.TU.Sc2ySwM_228.2503 Anthoceros agrestis HOM05D001401 ORTHO05D006368 3.4e-21 106.7 336 31.8
SEGI_14403 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 4.4e-16 89.7 364 28.6
Pp3c22_17090 Physcomitrium patens HOM05D001401 ORTHO05D006368 9.7e-16 88.6 167 37.1
Lj1C312T0 Lonicera japonica HOM05D001401 ORTHO05D006368 4.8e-15 86.3 132 45.5
Pp3c19_14090 Physcomitrium patens HOM05D001401 ORTHO05D006368 1.8e-14 84.3 398 27.1
CBR_g41289 Chara braunii HOM05D004891 ORTHO05D006368 2.1e-10 70.9 194 35.1
BcaC04g23035 Brassica carinata HOM05D001401 ORTHO05D006368 3.6e-10 70.1 86 48.8
Pp3c18_7150 Physcomitrium patens HOM05D001401 ORTHO05D006368 3.6e-10 70.1 355 26.8
unitig_21.g20770 Utricularia gibba HOM05D000370 ORTHO05D001335 4.7e-10 69.7 164 35.4
SalBow1G1061 Salvia bowleyana HOM05D001999 ORTHO05D001994 6.1e-10 69.3 76 56.6
FAN15G1877 Fragaria x ananassa HOM05D001401 ORTHO05D006368 1.2e-08 65.1 56 58.9
CDE02G3784 Ceratophyllum demersum HOM05D001401 ORTHO05D002222 1.3e-07 61.6 123 38.2
BcaB07g31779 Brassica carinata HOM05D001401 ORTHO05D006368 4.8e-07 59.7 112 43.8
SEGI_34742 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 6.3e-07 59.3 177 29.4
FAN15G3283 Fragaria x ananassa HOM05D001401 ORTHO05D006368 1.1e-06 58.5 106 41.5
SEGI_09179 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 2.4e-06 57.4 291 24.4
SEGI_17958 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 3.1e-06 57.0 287 23.3
SEGI_25677 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 3.1e-06 57.0 160 30.6
TAR629G2366 Trochodendron aralioides HOM05D008545 ORTHO05D010341 3.1e-06 57.0 70 42.9
ATR1093G054 Amborella trichopoda HOM05D004891 ORTHO05D005997 5.3e-06 56.2 281 27.0
PGR142G0227 Punica granatum HOM05D004891 ORTHO05D005997 9.1e-06 55.5 181 31.5
TAR375G0232 Trochodendron aralioides HOM05D004891 ORTHO05D005997 9.1e-06 55.5 168 30.4


User provided reference genes

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