Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc62.43 Carica papaya HOM05D006261 ORTHO05D007979 6.8e-171 604.0 322 100.0
Thecc.02G096300 Theobroma cacao HOM05D006261 ORTHO05D007979 9.6e-141 503.8 323 83.3
COL.COLO4_11716 Corchorus olitorius HOM05D006261 ORTHO05D007979 2.4e-139 499.2 322 82.3
Gorai.002G007100 Gossypium raimondii HOM05D006261 ORTHO05D007979 3.1e-139 498.8 322 81.1
QL11p038259 Quercus lobata HOM05D006261 ORTHO05D007979 2.9e-137 492.3 323 79.6
TWI31G0850 Tripterygium wilfordii HOM05D006261 ORTHO05D007979 2.3e-134 482.6 318 77.4
Manes.15G143000 Manihot esculenta HOM05D006261 ORTHO05D007979 6.7e-134 481.1 322 77.3
Potri.004G144100 Populus trichocarpa HOM05D006261 ORTHO05D007979 6.7e-134 481.1 322 78.0
Ciclev10028211m.g Citrus clementina HOM05D006261 ORTHO05D007979 7.4e-133 477.6 322 78.0
TAR381G0774 Trochodendron aralioides HOM05D006261 ORTHO05D007979 9.6e-133 477.2 316 77.2
GSVIVG01031798001 Vitis vinifera HOM05D006261 ORTHO05D007979 1.6e-132 476.5 322 78.0
Potri.009G106100 Populus trichocarpa HOM05D006261 ORTHO05D007979 4.8e-132 474.9 322 77.3
CANSAT25G2015 Cannabis sativa HOM05D006261 ORTHO05D007979 1.1e-131 473.8 322 76.1
Haze_01887 Corylus avellana HOM05D006261 ORTHO05D007979 1.1e-131 473.8 323 77.4
Atru.chr5.2784_Atru.chr5.2785 Acer truncatum HOM05D006261 ORTHO05D007979 2.4e-131 472.6 322 77.6
Atru.chr5.2799_Atru.chr5.2800 Acer truncatum HOM05D006261 ORTHO05D007979 2.4e-131 472.6 322 77.6
Gohir.A01G006000 Gossypium hirsutum HOM05D006261 ORTHO05D007979 2.4e-131 472.6 322 78.0
Cfa005432 Carpinus fangiana HOM05D006261 ORTHO05D007979 3.1e-131 472.2 323 77.1
Actinidia17850 Actinidia chinensis HOM05D006261 ORTHO05D007979 3.4e-130 468.8 320 75.6
Lalb_Chr10g0095461 Lupinus albus HOM05D006261 ORTHO05D007979 2.2e-129 466.1 320 74.4
MD10G1089700 Malus domestica HOM05D006261 ORTHO05D007979 2.2e-129 466.1 320 75.3
FAN15G2665 Fragaria x ananassa HOM05D006261 ORTHO05D007979 4.9e-129 464.9 320 75.3
Sabra04G0095700 Salix brachista HOM05D006261 ORTHO05D007979 8.4e-129 464.2 331 74.6
THA.LOC104807349 Tarenaya hassleriana HOM05D006261 ORTHO05D007979 1.1e-128 463.8 322 74.8
FAN20G2731 Fragaria x ananassa HOM05D006261 ORTHO05D007979 1.4e-128 463.4 320 75.0
Nn5g30173 Nelumbo nucifera HOM05D006261 ORTHO05D007979 1.9e-128 463.0 322 73.9
Prupe.8G116700 Prunus persica HOM05D006261 ORTHO05D007979 1.9e-128 463.0 320 74.4
Aqoxy6G01433 Aquilegia oxysepala HOM05D006261 ORTHO05D007979 2.5e-128 462.6 320 74.1
CiPaw.05G054700 Carya illinoinensis HOM05D006261 ORTHO05D007979 2.5e-128 462.6 351 71.2
Ca_12470_v3 Cicer arietinum L. HOM05D006261 ORTHO05D007979 4.2e-128 461.8 320 73.4
Medtr1g034000 Medicago truncatula HOM05D006261 ORTHO05D007979 5.5e-128 461.5 320 72.8
Thhalv10025131m.g Eutrema salsugineum HOM05D006261 ORTHO05D007979 7.1e-128 461.1 322 74.8
C01p04840 Brassica napus HOM05D006261 ORTHO05D007979 4.6e-127 458.4 322 73.9
Peaxi162Scf00684g00565 Petunia axillaris HOM05D006261 ORTHO05D007979 6.0e-127 458.0 322 73.3
TPR.G11138 Trifolium pratense HOM05D006261 ORTHO05D007979 6.0e-127 458.0 320 73.1
Psat6g096640 Pisum sativum HOM05D006261 ORTHO05D007979 2.3e-126 456.1 320 72.5
A01p04450 Brassica napus HOM05D006261 ORTHO05D007979 3.0e-126 455.7 322 73.6
arahy.Tifrunner.gnm1.ann1.WU5QTE Arachis hypogaea HOM05D006261 ORTHO05D007979 3.9e-126 455.3 326 71.8
FAN27G0123 Fragaria x ananassa HOM05D006261 ORTHO05D007979 5.1e-126 454.9 320 73.8
Lj2g0017302 Lotus japonicus HOM05D006261 ORTHO05D007979 5.1e-126 454.9 317 74.1
RcHm_v2.0_Chr6g0259011 Rosa chinensis HOM05D006261 ORTHO05D007979 5.1e-126 454.9 319 74.0
Sed0027300 Sechium edule HOM05D006261 ORTHO05D007979 8.7e-126 454.1 317 74.8
arahy.Tifrunner.gnm1.ann1.97F800 Arachis hypogaea HOM05D006261 ORTHO05D007979 1.5e-125 453.4 326 71.5
BraA01t00432Z Brassica rapa HOM05D006261 ORTHO05D007979 1.5e-125 453.4 322 73.3
CsaV3_7G008780 Cucumis sativus L. HOM05D006261 ORTHO05D007979 1.9e-125 453.0 319 73.7
PGR142G4090 Punica granatum HOM05D006261 ORTHO05D007979 1.9e-125 453.0 316 76.3
BolC1t00468H Brassica oleracea HOM05D006261 ORTHO05D007979 5.7e-125 451.4 320 72.8
Sp7g31680 Schrenkiella parvula HOM05D006261 ORTHO05D007979 1.3e-124 450.3 322 73.0
Glyma.07G178400 Glycine max HOM05D006261 ORTHO05D007979 1.6e-124 449.9 320 73.4
MBI02_g21208_MAGBIO Magnolia biondii HOM05D006261 ORTHO05D007979 2.1e-124 449.5 322 71.4
PSO541G6069 Papaver somniferum HOM05D006261 ORTHO05D007979 2.1e-124 449.5 322 72.0
AT4G33945 Arabidopsis thaliana HOM05D006261 ORTHO05D007979 3.7e-124 448.7 322 73.6
Rhsim05G0080700 Rhododendron simsii HOM05D006261 ORTHO05D007979 1.4e-123 446.8 341 70.7
Aa31LG2G16340 Aethionema arabicum HOM05D006261 ORTHO05D007979 1.8e-123 446.4 322 73.0
Eucgr.I01173 Eucalyptus grandis HOM05D006261 ORTHO05D007979 6.9e-123 444.5 320 73.1
VMungo1215G1075 Vigna mungo HOM05D006261 ORTHO05D007979 2.0e-122 443.0 320 72.2
PGSC0003DMG400022938 Solanum tuberosum HOM05D006261 ORTHO05D007979 2.6e-122 442.6 317 71.9
AL7G17470 Arabidopsis lyrata HOM05D006261 ORTHO05D007979 5.8e-122 441.4 322 72.4
Carub.0007s0647 Capsella rubella HOM05D006261 ORTHO05D007979 5.8e-122 441.4 322 72.4
Hma1.2p1_3161F.1_g333480 Hydrangea macrophylla HOM05D006261 ORTHO05D007979 7.6e-122 441.0 355 68.2
vmacro19482 Vaccinium macrocarpon HOM05D006261 ORTHO05D007979 2.2e-121 439.5 346 69.4
Hma1.2p1_0584F.1_g183110 Hydrangea macrophylla HOM05D006261 ORTHO05D007979 5.0e-121 438.3 354 68.1
MELO3C018434.2 Cucumis melo HOM05D006261 ORTHO05D007979 1.9e-120 436.4 319 72.4
Hund06186 Selenicereus undatus HOM05D006261 ORTHO05D007979 3.2e-120 435.6 320 69.7
Phvul.003G012500 Phaseolus vulgaris HOM05D006261 ORTHO05D007979 1.2e-119 433.7 321 71.7
Solyc11g044870.2 Solanum lycopersicum HOM05D006261 ORTHO05D007979 2.7e-119 432.6 317 70.7
Sopen11g020360 Solanum pennellii HOM05D006261 ORTHO05D007979 3.5e-119 432.2 316 70.3
EL10Ac9g21824 Beta vulgaris HOM05D006261 ORTHO05D007979 1.0e-118 430.6 320 67.8
Cc02_g18510 Coffea canephora HOM05D006261 ORTHO05D007979 1.5e-117 426.8 325 68.6
CSS0049642 Camellia sinensis var. sinensis HOM05D006261 ORTHO05D007979 1.1e-115 420.6 322 71.1
AUR62011430 Chenopodium quinoa HOM05D006261 ORTHO05D007979 1.4e-115 420.2 320 67.2
ECA236G1018 Erigeron canadensis HOM05D006261 ORTHO05D001911 9.0e-115 417.5 322 67.1
Lsat_1_v5_gn_7_87821 Lactuca sativa HOM05D006261 ORTHO05D007979 1.2e-114 417.2 322 65.8
SalBow6G7179 Salvia bowleyana HOM05D006261 ORTHO05D007979 1.0e-113 414.1 322 65.8
HanXRQChr16g0508741 Helianthus annuus HOM05D006261 ORTHO05D007979 1.1e-112 410.6 322 65.5
CSS0020679 Camellia sinensis var. sinensis HOM05D006261 ORTHO05D007979 1.4e-112 410.2 317 70.3
SGA_v2.0_scaffold58G20611 Striga asiatica HOM05D006261 ORTHO05D007979 9.4e-112 407.5 322 66.8
Gohir.D01G006100 Gossypium hirsutum HOM05D006261 ORTHO05D007979 3.6e-111 405.6 322 68.6
Migut.B00311 Erythranthe guttata HOM05D006261 ORTHO05D007979 7.9e-111 404.4 322 65.5
AUR62016631 Chenopodium quinoa HOM05D006261 ORTHO05D007979 1.4e-110 403.7 333 63.7
Zm00001eb255680 Zea mays HOM05D006261 ORTHO05D007979 1.7e-108 396.7 322 61.8
Duzib052G0221 Durio zibethinus HOM05D006261 ORTHO05D007979 2.2e-108 396.4 322 68.0
Nitab4.5_0000736g0010 Nicotiana tabacum HOM05D006261 ORTHO05D007979 2.8e-108 396.0 320 66.6
Nitab4.5_0002141g0010 Nicotiana tabacum HOM05D006261 ORTHO05D007979 6.3e-108 394.8 314 67.2
Sc08g0000100 Simmondsia chinensis HOM05D006261 ORTHO05D007979 1.8e-107 393.3 281 73.3
ClCG02G005750 Citrullus lanatus HOM05D006261 ORTHO05D007979 3.1e-107 392.5 319 66.1
unitig_21.g20756 Utricularia gibba HOM05D006261 ORTHO05D007979 2.6e-106 389.4 320 62.8
ATR0097G005 Amborella trichopoda HOM05D006261 ORTHO05D007979 5.9e-106 388.3 321 62.9
Lj9C360T7 Lonicera japonica HOM05D006261 ORTHO05D007979 2.5e-104 382.9 341 61.9
FAN24G3480 Fragaria x ananassa HOM05D006261 ORTHO05D007979 1.1e-101 374.0 288 70.8
Oeu007256.2 Olea europaea HOM05D006261 ORTHO05D007979 6.3e-100 368.2 272 72.1
Ah.01g020100 Amaranthus hybridus HOM05D006261 ORTHO05D007979 1.1e-99 367.5 320 60.6
HPP92_004238 Vanilla planifolia HOM05D006261 ORTHO05D007979 3.6e-95 352.4 319 58.6
Os02g0761200 Oryza sativa ssp. japonica HOM05D006261 ORTHO05D007979 4.7e-95 352.1 322 57.5
BcaB03g11867 Brassica carinata HOM05D006261 ORTHO05D007979 5.2e-94 348.6 267 72.7
HPP92_004260 Vanilla planifolia HOM05D006261 ORTHO05D007979 1.1e-93 347.4 319 58.6
SEGI_22642 Sequoiadendron giganteum HOM05D006261 ORTHO05D007979 1.1e-91 340.9 321 54.8
CARHR242070 Cardamine hirsuta HOM05D006261 ORTHO05D007979 8.0e-87 324.7 220 77.3
MSTRG.16765 Avicennia marina HOM05D006261 ORTHO05D007979 4.8e-84 315.5 322 54.3
FvH4_2g06790 Fragaria vesca HOM05D006261 ORTHO05D007979 2.9e-81 306.2 221 71.9
CDE10G1007 Ceratophyllum demersum HOM05D006261 ORTHO05D007979 1.2e-79 300.8 320 54.4
Dinv23589 Davidia involucrata HOM05D006261 ORTHO05D007979 1.2e-71 274.2 186 75.8
RcHm_v2.0_Chr6g0252951 Rosa chinensis HOM05D006261 ORTHO05D007979 2.7e-66 256.5 335 48.1
DCAR_000243 Daucus carota HOM05D006261 ORTHO05D007979 2.0e-61 240.4 186 67.2
CAN.G406.2 Capsicum annuum HOM05D006261 ORTHO05D007979 5.8e-61 238.8 185 65.9
Mapoly0088s0010 Marchantia polymorpha HOM05D006261 ORTHO05D007979 2.2e-60 236.9 315 41.9
SHI05382 Sapria himalayana HOM05D006261 ORTHO05D007979 5.0e-57 225.7 221 57.0
CDE10G0955 Ceratophyllum demersum HOM05D006261 ORTHO05D007979 1.9e-48 197.2 185 55.7
SMO116G0201 Selaginella moellendorffii HOM05D006261 ORTHO05D007979 1.9e-48 197.2 281 39.9
MBI02_g32602_MAGBIO Magnolia biondii HOM05D006261 ORTHO05D007979 7.3e-48 195.3 156 67.3
Haze_01888 Corylus avellana HOM05D006261 ORTHO05D007979 1.8e-46 190.7 150 69.3
Glyma.20G009900 Glycine max HOM05D006261 ORTHO05D007979 7.6e-45 185.3 196 55.6
Pp3c15_12310 Physcomitrium patens HOM05D006261 ORTHO05D007979 1.6e-39 167.5 284 36.3
MCO13G090 Micromonas commoda HOM05D006261 ORTHO05D007979 1.5e-37 161.0 304 39.5
MBI15_g16863_MAGBIO Magnolia biondii HOM05D006261 ORTHO05D007979 5.8e-29 132.5 128 60.2
CAN.G406.3 Capsicum annuum HOM05D006261 ORTHO05D007979 7.1e-27 125.6 133 54.1
BcaB01g01387 Brassica carinata HOM05D006261 ORTHO05D007979 5.1e-25 119.4 81 74.1
DCAR_022063 Daucus carota HOM05D006261 ORTHO05D007979 5.1e-25 119.4 85 71.8
BcaB01g01385 Brassica carinata HOM05D006261 ORTHO05D007979 1.9e-24 117.5 81 74.1
BcaB06g27277 Brassica carinata HOM05D006261 ORTHO05D007979 1.9e-24 117.5 82 75.6
Cre07.g343850 Chlamydomonas reinhardtii HOM05D006261 ORTHO05D007979 1.9e-24 117.5 329 29.8
Dinv42128 Davidia involucrata HOM05D006261 ORTHO05D007979 9.6e-24 115.2 224 43.3
SHI05383 Sapria himalayana HOM05D006261 ORTHO05D007979 1.6e-18 97.8 100 53.0
CBR_g53672 Chara braunii HOM05D000019 ORTHO05D000353 3.0e-17 93.6 190 34.2
CAN.G93.11 Capsicum annuum HOM05D006261 ORTHO05D007979 8.7e-17 92.0 100 52.0
PRCOL_00000949 Prasinoderma coloniale HOM05D006261 ORTHO05D007979 1.7e-12 77.8 245 26.9
Lj1g0009361 Lotus japonicus HOM05D041574 ORTHO05D236155 1.0e-09 68.6 72 48.6
Lj5g0023620 Lotus japonicus HOM05D041574 ORTHO05D236101 5.1e-09 66.2 72 47.2
SGA_v2.0_scaffold1G00677 Striga asiatica HOM05D002889 ORTHO05D003366 2.4e-06 57.4 71 46.5


User provided reference genes

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