Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc62.2 Carica papaya HOM05D006107 ORTHO05D007455 4.8e-307 1057.0 528 100.0
Sabra09G0076700 Salix brachista HOM05D006107 ORTHO05D007455 4.6e-249 864.4 487 87.3
Potri.009G100800 Populus trichocarpa HOM05D006107 ORTHO05D007455 5.1e-248 860.9 487 87.1
QL11p035424 Quercus lobata HOM05D006107 ORTHO05D007455 4.7e-246 854.4 488 86.5
CsaV3_7G008530 Cucumis sativus L. HOM05D006107 ORTHO05D007455 6.2e-246 854.0 492 84.3
PGR042G0079 Punica granatum HOM05D006107 ORTHO05D007455 8.1e-246 853.6 488 86.3
MELO3C018456.2 Cucumis melo HOM05D006107 ORTHO05D007455 5.2e-245 850.9 502 82.7
TWI31G1484 Tripterygium wilfordii HOM05D006107 ORTHO05D007455 1.5e-244 849.4 495 84.8
GSVIVG01031728001 Vitis vinifera HOM05D006107 ORTHO05D007455 2.0e-244 849.0 486 86.2
Hma1.2p1_0474F.1_g160480 Hydrangea macrophylla HOM05D006107 ORTHO05D007455 1.3e-243 846.3 476 86.1
Atru.chr5.2684 Acer truncatum HOM05D006107 ORTHO05D007455 3.8e-243 844.7 486 86.0
THA.LOC104807265 Tarenaya hassleriana HOM05D006107 ORTHO05D007455 3.8e-243 844.7 497 83.1
Thecc.02G102000 Theobroma cacao HOM05D006107 ORTHO05D007455 4.9e-243 844.3 491 83.7
Ciclev10028103m.g Citrus clementina HOM05D006107 ORTHO05D007455 1.4e-242 842.8 486 86.0
Duzib132G0557 Durio zibethinus HOM05D006107 ORTHO05D007455 9.3e-242 840.1 491 83.5
Rhsim05G0085900 Rhododendron simsii HOM05D006107 ORTHO05D007455 2.1e-241 839.0 494 83.6
RcHm_v2.0_Chr6g0257681 Rosa chinensis HOM05D006107 ORTHO05D007455 2.7e-241 838.6 486 85.2
Gohir.A12G023600 Gossypium hirsutum HOM05D006107 ORTHO05D007455 3.5e-241 838.2 493 83.0
Prupe.8G126800 Prunus persica HOM05D006107 ORTHO05D007455 3.5e-241 838.2 489 84.7
Sed0010263 Sechium edule HOM05D006107 ORTHO05D007455 3.5e-241 838.2 492 83.1
CSS0002619 Camellia sinensis var. sinensis HOM05D006107 ORTHO05D007455 6.0e-241 837.4 495 83.4
CSS0005791 Camellia sinensis var. sinensis HOM05D006107 ORTHO05D007455 7.8e-241 837.0 495 83.4
MD05G1082300 Malus domestica HOM05D006107 ORTHO05D007455 1.0e-240 836.6 486 84.8
AT4G34030 Arabidopsis thaliana HOM05D006107 ORTHO05D007455 1.3e-240 836.3 501 80.8
Gorai.008G024600 Gossypium raimondii HOM05D006107 ORTHO05D007455 1.3e-240 836.3 493 83.0
vmacro19505 Vaccinium macrocarpon HOM05D006107 ORTHO05D007455 1.7e-240 835.9 494 84.0
Sp7g31760 Schrenkiella parvula HOM05D006107 ORTHO05D007455 2.3e-240 835.5 501 80.6
FvH4_2g05870 Fragaria vesca HOM05D006107 ORTHO05D007455 3.0e-240 835.1 486 84.6
FAN24G1318 Fragaria x ananassa HOM05D006107 ORTHO05D007455 3.9e-240 834.7 486 84.6
Gohir.D12G024200 Gossypium hirsutum HOM05D006107 ORTHO05D007455 3.9e-240 834.7 493 82.8
AL7G17360 Arabidopsis lyrata HOM05D006107 ORTHO05D007455 6.6e-240 833.9 501 81.2
FAN15G1599 Fragaria x ananassa HOM05D006107 ORTHO05D007455 8.7e-240 833.6 486 84.4
FAN20G2345 Fragaria x ananassa HOM05D006107 ORTHO05D007455 1.9e-239 832.4 486 84.2
ClCG02G006000 Citrullus lanatus HOM05D006107 ORTHO05D007455 4.3e-239 831.2 528 78.6
MBI03_g13479_MAGBIO Magnolia biondii HOM05D006107 ORTHO05D007455 4.3e-239 831.2 489 82.4
Carub.0007s0637 Capsella rubella HOM05D006107 ORTHO05D007455 1.3e-238 829.7 501 79.8
Eucgr.G01434 Eucalyptus grandis HOM05D006107 ORTHO05D007455 4.8e-238 827.8 489 83.2
TAR376G0662 Trochodendron aralioides HOM05D006107 ORTHO05D007455 4.8e-238 827.8 486 84.2
Thhalv10024753m.g Eutrema salsugineum HOM05D006107 ORTHO05D007455 1.1e-237 826.6 501 80.0
arahy.Tifrunner.gnm1.ann1.Q9TTL4 Arachis hypogaea HOM05D006107 ORTHO05D007455 2.4e-237 825.5 460 87.8
BcaB03g11861 Brassica carinata HOM05D006107 ORTHO05D007455 3.1e-237 825.1 500 80.4
C07p60130 Brassica napus HOM05D006107 ORTHO05D007455 3.1e-237 825.1 502 79.9
BolC7t46453H Brassica oleracea HOM05D006107 ORTHO05D007455 3.1e-237 825.1 502 79.9
A03p62570 Brassica napus HOM05D006107 ORTHO05D007455 1.2e-236 823.2 500 80.4
Lj5A210T89 Lonicera japonica HOM05D006107 ORTHO05D007455 1.2e-236 823.2 494 82.6
BcaC01g00937 Brassica carinata HOM05D006107 ORTHO05D007455 2.2e-235 818.9 498 80.1
Lalb_Chr16g0384781 Lupinus albus HOM05D006107 ORTHO05D007455 4.9e-235 817.8 486 83.3
C03p86150 Brassica napus HOM05D006107 ORTHO05D007455 6.4e-235 817.4 498 79.7
BolC3t20903H Brassica oleracea HOM05D006107 ORTHO05D007455 1.1e-234 816.6 498 79.9
BraA08t33679Z Brassica rapa HOM05D006107 ORTHO05D007455 1.1e-234 816.6 500 80.0
Aa31LG2G16450 Aethionema arabicum HOM05D006107 ORTHO05D007455 3.2e-234 815.1 502 79.3
Haze_10087 Corylus avellana HOM05D006107 ORTHO05D007455 3.2e-234 815.1 487 83.8
A08p17180 Brassica napus HOM05D006107 ORTHO05D007455 4.2e-234 814.7 500 79.8
CANSAT25G2960 Cannabis sativa HOM05D006107 ORTHO05D007455 3.5e-233 811.6 489 80.6
RcHm_v2.0_Chr6g0257701 Rosa chinensis HOM05D006107 ORTHO05D007455 3.5e-233 811.6 460 84.8
SGA_v2.0_scaffold90G27632 Striga asiatica HOM05D006107 ORTHO05D007455 3.5e-233 811.6 488 82.2
Lj4g0016203 Lotus japonicus HOM05D006107 ORTHO05D007455 6.7e-232 807.4 486 82.1
Sc18g0004170 Simmondsia chinensis HOM05D006107 ORTHO05D007455 7.4e-231 803.9 508 78.1
Migut.B00356 Erythranthe guttata HOM05D006107 ORTHO05D007455 1.6e-230 802.7 491 80.2
PSO675G2583 Papaver somniferum HOM05D006107 ORTHO05D007455 2.8e-230 802.0 488 82.0
SalBow6G1673 Salvia bowleyana HOM05D006107 ORTHO05D007455 6.2e-230 800.8 495 80.0
EL10Ac1g02230 Beta vulgaris HOM05D006107 ORTHO05D007455 8.1e-230 800.4 503 78.9
Medtr4g085890 Medicago truncatula HOM05D006107 ORTHO05D007455 8.1e-230 800.4 486 81.3
Peaxi162Scf00016g01935 Petunia axillaris HOM05D006107 ORTHO05D007455 1.4e-229 799.7 488 81.1
Psat7g125400 Pisum sativum HOM05D006107 ORTHO05D007455 2.4e-229 798.9 486 81.1
Hund06173 Selenicereus undatus HOM05D006107 ORTHO05D007455 4.0e-229 798.1 490 81.2
Aqoxy6G01306 Aquilegia oxysepala HOM05D006107 ORTHO05D007455 1.2e-228 796.6 496 77.2
PSO541G4551 Papaver somniferum HOM05D006107 ORTHO05D007455 1.5e-228 796.2 489 81.4
arahy.Tifrunner.gnm1.ann1.H5D5IL Arachis hypogaea HOM05D006107 ORTHO05D007455 2.6e-228 795.4 486 81.9
Glyma.02G131500 Glycine max HOM05D006107 ORTHO05D007455 2.2e-227 792.3 434 88.5
Glyma.07G213500 Glycine max HOM05D006107 ORTHO05D007455 2.9e-227 792.0 455 84.8
VMungo0251G2128 Vigna mungo HOM05D006107 ORTHO05D007455 3.8e-227 791.6 438 87.4
COL.COLO4_32644 Corchorus olitorius HOM05D006107 ORTHO05D007455 4.9e-227 791.2 498 79.3
Phvul.003G291600 Phaseolus vulgaris HOM05D006107 ORTHO05D007455 8.4e-227 790.4 434 88.0
TPR.G12695 Trifolium pratense HOM05D006107 ORTHO05D007455 3.2e-226 788.5 460 83.7
Ca_18695_v3 Cicer arietinum L. HOM05D006107 ORTHO05D007455 4.2e-226 788.1 434 87.8
Cfa004529 Carpinus fangiana HOM05D006107 ORTHO05D007455 7.1e-226 787.3 421 91.2
ECA236G2832 Erigeron canadensis HOM05D006107 ORTHO05D007455 6.0e-225 784.3 467 81.6
AUR62035403 Chenopodium quinoa HOM05D006107 ORTHO05D007455 1.0e-224 783.5 533 73.7
Lsat_1_v5_gn_7_86820 Lactuca sativa HOM05D006107 ORTHO05D007455 1.0e-224 783.5 453 83.4
HPP92_004071 Vanilla planifolia HOM05D006107 ORTHO05D007455 3.9e-224 781.6 457 82.7
Sopen01g050230 Solanum pennellii HOM05D006107 ORTHO05D007455 6.7e-224 780.8 459 82.8
CAN.G1041.37 Capsicum annuum HOM05D006107 ORTHO05D007455 1.9e-223 779.2 459 82.6
Nitab4.5_0018866g0010 Nicotiana tabacum HOM05D006107 ORTHO05D007455 2.1e-222 775.8 502 77.9
Solyc01g108030.4 Solanum lycopersicum HOM05D006107 ORTHO05D007455 2.1e-222 775.8 490 78.8
ATR1126G046 Amborella trichopoda HOM05D006107 ORTHO05D007455 1.4e-221 773.1 475 79.4
BcaNung03357 Brassica carinata HOM05D006107 ORTHO05D007455 1.4e-221 773.1 503 76.5
Cc02_g18880 Coffea canephora HOM05D006107 ORTHO05D007455 4.0e-221 771.5 434 85.7
Dinv42164 Davidia involucrata HOM05D006107 ORTHO05D007455 6.9e-221 770.8 486 79.8
HanXRQChr11g0331361 Helianthus annuus HOM05D006107 ORTHO05D007455 6.9e-221 770.8 495 77.6
PGSC0003DMG400025888 Solanum tuberosum HOM05D006107 ORTHO05D007455 6.7e-216 754.2 436 84.4
Zm00001eb179170 Zea mays HOM05D006107 ORTHO05D007455 2.5e-215 752.3 483 75.8
DCAR_001629 Daucus carota HOM05D006107 ORTHO05D007455 1.6e-214 749.6 457 79.6
Nitab4.5_0001428g0130 Nicotiana tabacum HOM05D006107 ORTHO05D007455 4.1e-213 745.0 489 76.1
CDE10G1185 Ceratophyllum demersum HOM05D006107 ORTHO05D007455 3.6e-209 731.9 455 77.4
Pp3c3_22750 Physcomitrium patens HOM05D006107 ORTHO05D007455 5.7e-207 724.5 470 76.0
Mapoly0009s0150 Marchantia polymorpha HOM05D006107 ORTHO05D007455 5.9e-204 714.5 460 75.4
unitig_21.g20740 Utricularia gibba HOM05D006107 ORTHO05D007455 7.7e-204 714.1 486 73.9
Oeu007292.2 Olea europaea HOM05D006107 ORTHO05D007455 3.6e-201 705.3 448 79.0
CARHR242170 Cardamine hirsuta HOM05D006107 ORTHO05D007455 1.5e-199 699.9 381 87.1
FAN27G3033 Fragaria x ananassa HOM05D006107 ORTHO05D007455 1.8e-197 693.0 431 80.0
Nn5g30280 Nelumbo nucifera HOM05D006107 ORTHO05D007455 1.8e-197 693.0 381 87.4
AagrBONN_evm.TU.Sc2ySwM_368.3420 Anthoceros agrestis HOM05D006107 ORTHO05D007455 2.9e-195 685.6 456 72.8
CiPaw.05G007100 Carya illinoinensis HOM05D006107 ORTHO05D007455 1.1e-189 667.2 352 91.5
SEGI_09747 Sequoiadendron giganteum HOM05D006107 ORTHO05D007455 7.0e-189 664.5 397 81.4
Manes.07G078100 Manihot esculenta HOM05D006107 ORTHO05D007455 8.5e-187 657.5 356 89.9
HPP92_004116 Vanilla planifolia HOM05D006107 ORTHO05D007455 3.0e-184 649.0 457 71.6
SMO174G0062 Selaginella moellendorffii HOM05D006107 ORTHO05D007455 1.7e-171 606.7 455 66.2
Cre03.g181200 Chlamydomonas reinhardtii HOM05D006107 ORTHO05D007455 1.8e-168 596.7 471 62.8
Haze_27116 Corylus avellana HOM05D006107 ORTHO05D007455 3.3e-154 549.3 444 60.4
AUR62041887 Chenopodium quinoa HOM05D006107 ORTHO05D007455 2.3e-152 543.1 396 70.7
Haze_26655 Corylus avellana HOM05D006107 ORTHO05D007455 2.3e-147 526.6 477 55.3
PRCOL_00006414 Prasinoderma coloniale HOM05D006107 ORTHO05D007455 4.3e-146 522.3 443 59.6
Actinidia17868 Actinidia chinensis HOM05D006107 ORTHO05D007455 1.1e-144 517.7 493 58.4
Haze_27030 Corylus avellana HOM05D006107 ORTHO05D007455 9.9e-135 484.6 427 56.9
Hma1.2p1_0474F.1_g160470 Hydrangea macrophylla HOM05D006107 ORTHO05D007455 1.3e-134 484.2 275 85.5
Ah.00g000150 Amaranthus hybridus HOM05D006107 ORTHO05D007455 1.8e-112 410.6 248 79.8
QL11p035444 Quercus lobata HOM05D006107 ORTHO05D007455 3.5e-79 300.1 158 90.5
Haze_26656 Corylus avellana HOM05D006107 ORTHO05D007455 6.5e-62 242.7 168 68.5
CBR_g54985 Chara braunii HOM05D006107 ORTHO05D007455 1.6e-52 211.5 438 30.4
Medtr3g011860 Medicago truncatula HOM05D006107 ORTHO05D007455 1.3e-41 175.3 208 47.1
Cfa025742 Carpinus fangiana HOM05D006107 ORTHO05D007455 1.7e-30 138.3 476 25.0
QL11p035447 Quercus lobata HOM05D006107 ORTHO05D007455 5.1e-30 136.7 70 92.9
CARHR242160 Cardamine hirsuta HOM05D006107 ORTHO05D007455 4.3e-29 133.7 122 58.2
SEGI_09117 Sequoiadendron giganteum HOM05D006107 ORTHO05D007455 3.6e-20 104.0 107 51.4
QL11p035429 Quercus lobata HOM05D006107 ORTHO05D007455 9.9e-10 69.3 68 55.9
CDE05G3043 Ceratophyllum demersum HOM05D003397 ORTHO05D004390 1.9e-08 65.1 335 24.5
MCO15G166 Micromonas commoda HOM05D003397 ORTHO05D004390 4.2e-08 63.9 505 21.8
Solyc01g108060.2 Solanum lycopersicum HOM05D006107 ORTHO05D007455 2.3e-06 58.2 30 83.3
Cfa022865 Carpinus fangiana HOM05D003397 ORTHO05D004390 5.1e-06 57.0 303 23.4


User provided reference genes

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