Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc62.150 Carica papaya HOM05D006766 ORTHO05D008534 8.5e-45 183.3 95 100.0
Thecc.02G085300 Theobroma cacao HOM05D006766 ORTHO05D008534 2.4e-31 138.7 96 75.0
COL.COLO4_25930 Corchorus olitorius HOM05D006766 ORTHO05D008534 2.2e-29 132.1 96 72.9
Gohir.D02G215600 Gossypium hirsutum HOM05D006766 ORTHO05D008534 1.6e-27 125.9 96 69.8
Duzib248G0712 Durio zibethinus HOM05D006766 ORTHO05D008534 2.1e-27 125.6 90 73.3
Duzib052G0491 Durio zibethinus HOM05D006766 ORTHO05D008534 6.7e-26 120.6 90 71.1
Gohir.A03G194400 Gossypium hirsutum HOM05D006766 ORTHO05D008534 2.6e-25 118.6 94 66.0
CARHR247400 Cardamine hirsuta HOM05D006766 ORTHO05D008534 3.3e-25 118.2 98 65.3
Prupe.8G097200 Prunus persica HOM05D006766 ORTHO05D008534 3.3e-25 118.2 98 64.3
Sp7g36570 Schrenkiella parvula HOM05D006766 ORTHO05D008534 9.7e-25 116.7 97 64.9
Carub.0007s0121 Capsella rubella HOM05D006766 ORTHO05D008534 2.2e-24 115.5 97 64.9
AL7G11290 Arabidopsis lyrata HOM05D006766 ORTHO05D008534 6.3e-24 114.0 97 64.9
Sabra04G0102700 Salix brachista HOM05D006766 ORTHO05D008534 8.2e-24 113.6 96 63.5
TWI31G1395 Tripterygium wilfordii HOM05D006766 ORTHO05D008534 8.2e-24 113.6 94 63.8
Thhalv10026662m.g Eutrema salsugineum HOM05D006766 ORTHO05D008534 1.8e-23 112.5 95 63.2
CiPaw.05G064400 Carya illinoinensis HOM05D006766 ORTHO05D008534 4.1e-23 111.3 94 63.8
Manes.17G101000 Manihot esculenta HOM05D006766 ORTHO05D008534 4.1e-23 111.3 94 61.7
RcHm_v2.0_Chr6g0264231 Rosa chinensis HOM05D006766 ORTHO05D008534 4.1e-23 111.3 96 62.5
GSVIVG01031965001 Vitis vinifera HOM05D006766 ORTHO05D008534 5.3e-23 110.9 95 61.1
Ciclev10029674m.g Citrus clementina HOM05D006766 ORTHO05D008534 1.2e-22 109.8 95 63.2
FvH4_2g08780 Fragaria vesca HOM05D006766 ORTHO05D008534 1.2e-22 109.8 96 61.5
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 1.2e-22 109.8 98 62.2
FAN15G0619 Fragaria x ananassa HOM05D006766 ORTHO05D008534 1.6e-22 109.4 98 62.2
MD10G1076400 Malus domestica HOM05D006766 ORTHO05D008534 1.6e-22 109.4 97 59.8
Potri.004G154800 Populus trichocarpa HOM05D006766 ORTHO05D008534 5.9e-22 107.5 94 61.7
THA.LOC104824828 Tarenaya hassleriana HOM05D006766 ORTHO05D008534 5.9e-22 107.5 95 61.1
Haze_02383 Corylus avellana HOM05D001555 ORTHO05D001616 1.0e-21 106.7 90 64.4
FAN27G0567 Fragaria x ananassa HOM05D006766 ORTHO05D008534 1.0e-21 106.7 92 63.0
Cfa005004 Carpinus fangiana HOM05D006766 ORTHO05D008534 1.7e-21 105.9 90 63.3
AT4G39300 Arabidopsis thaliana HOM05D006766 ORTHO05D008534 2.2e-21 105.5 95 61.1
Aa31LG7G14800 Aethionema arabicum HOM05D006766 ORTHO05D008534 2.9e-21 105.1 97 61.9
A01p00310 Brassica napus HOM05D006766 ORTHO05D008534 2.9e-21 105.1 98 60.2
Eucgr.I01270 Eucalyptus grandis HOM05D006766 ORTHO05D008534 3.8e-21 104.8 93 58.1
BcaNung03879 Brassica carinata HOM05D006766 ORTHO05D008534 8.5e-21 103.6 100 57.0
FAN24G2015 Fragaria x ananassa HOM05D006766 ORTHO05D008534 8.5e-21 103.6 92 62.0
PGR142G1230 Punica granatum HOM05D006766 ORTHO05D008534 1.1e-20 103.2 93 58.1
TAR625G1191 Trochodendron aralioides HOM05D006766 ORTHO05D008534 1.1e-20 103.2 98 59.2
MD10G1031700 Malus domestica HOM05D006766 ORTHO05D008534 1.5e-20 102.8 91 59.3
Actinidia27896 Actinidia chinensis HOM05D006766 ORTHO05D008534 1.9e-20 102.4 92 63.0
TAR381G1290 Trochodendron aralioides HOM05D006766 ORTHO05D008534 1.9e-20 102.4 88 59.1
Aa31LG6G15960 Aethionema arabicum HOM05D006766 ORTHO05D008534 2.5e-20 102.1 97 62.9
Nn5g30294 Nelumbo nucifera HOM05D006766 ORTHO05D008534 3.2e-20 101.7 96 58.3
Sc18g0004470 Simmondsia chinensis HOM05D006766 ORTHO05D008534 7.2e-20 100.5 94 56.4
Gohir.A12G028700 Gossypium hirsutum HOM05D006766 ORTHO05D008534 9.4e-20 100.1 95 62.1
Gohir.D12G028200 Gossypium hirsutum HOM05D006766 ORTHO05D008534 9.4e-20 100.1 95 62.1
Gorai.008G028800 Gossypium raimondii HOM05D006766 ORTHO05D008534 1.2e-19 99.8 94 61.7
BcaNung02343 Brassica carinata HOM05D006766 ORTHO05D008534 1.6e-19 99.4 95 56.8
Hma1.2p1_0066F.1_g036420 Hydrangea macrophylla HOM05D006766 ORTHO05D008534 1.6e-19 99.4 100 60.0
Sed0007595 Sechium edule HOM05D006766 ORTHO05D008534 3.6e-19 98.2 96 59.4
C01p00430 Brassica napus HOM05D006766 ORTHO05D008534 4.7e-19 97.8 93 59.1
BolC1t00048H Brassica oleracea HOM05D006766 ORTHO05D008534 1.8e-18 95.9 91 59.3
CSS0023455 Camellia sinensis var. sinensis HOM05D006766 ORTHO05D008534 2.3e-18 95.5 97 58.8
PSO541G0900 Papaver somniferum HOM05D006766 ORTHO05D008534 2.3e-18 95.5 96 56.2
BraA01t00038Z Brassica rapa HOM05D006766 ORTHO05D008534 4.0e-18 94.7 90 58.9
A06p48570 Brassica napus HOM05D006766 ORTHO05D008534 5.2e-18 94.4 92 57.6
Lsat_1_v5_gn_5_118560 Lactuca sativa HOM05D006766 ORTHO05D008534 8.8e-18 93.6 95 53.7
Gorai.005G243600 Gossypium raimondii HOM05D006766 ORTHO05D008534 1.2e-17 93.2 95 54.7
PSO144G0109 Papaver somniferum HOM05D006766 ORTHO05D008534 1.2e-17 93.2 96 54.2
PSO144G0117 Papaver somniferum HOM05D006766 ORTHO05D008534 1.2e-17 93.2 96 54.2
Nn1g04840 Nelumbo nucifera HOM05D006766 ORTHO05D008534 2.6e-17 92.0 90 57.8
PSO675G5258 Papaver somniferum HOM05D006766 ORTHO05D008534 2.6e-17 92.0 94 54.3
Atru.chr5.3014 Acer truncatum HOM05D006766 ORTHO05D008534 3.4e-17 91.7 78 61.5
CsaV3_7G023550 Cucumis sativus L. HOM05D006766 ORTHO05D008534 3.4e-17 91.7 96 54.2
QL12p018934 Quercus lobata HOM05D006766 ORTHO05D008534 4.4e-17 91.3 100 55.0
RcHm_v2.0_Chr5g0010131 Rosa chinensis HOM05D006766 ORTHO05D008534 4.4e-17 91.3 92 53.3
Lsat_1_v5_gn_7_89221 Lactuca sativa HOM05D006766 ORTHO05D008534 5.7e-17 90.9 96 53.1
Potri.009G115900 Populus trichocarpa HOM05D006766 ORTHO05D008534 9.8e-17 90.1 89 56.2
Sed0021705 Sechium edule HOM05D006766 ORTHO05D008534 9.8e-17 90.1 96 55.2
CSS0001017 Camellia sinensis var. sinensis HOM05D006766 ORTHO05D008534 1.7e-16 89.4 97 52.6
PSO675G5014 Papaver somniferum HOM05D006766 ORTHO05D008534 1.7e-16 89.4 95 53.7
HanXRQChr10g0307051 Helianthus annuus HOM05D006766 ORTHO05D008534 2.2e-16 89.0 96 52.1
C07p63250 Brassica napus HOM05D006766 ORTHO05D008534 2.8e-16 88.6 89 53.9
BolC7t46735H Brassica oleracea HOM05D006766 ORTHO05D008534 2.8e-16 88.6 89 53.9
ClCG02G005020 Citrullus lanatus HOM05D006766 ORTHO05D008534 3.7e-16 88.2 90 54.4
ECA234G2659 Erigeron canadensis HOM05D006766 ORTHO05D008534 1.1e-15 86.7 97 54.6
vmacro02108 Vaccinium macrocarpon HOM05D006766 ORTHO05D008534 1.8e-15 85.9 90 54.4
arahy.Tifrunner.gnm1.ann1.0D280N Arachis hypogaea HOM05D006766 ORTHO05D008534 3.5e-14 81.6 84 52.4
arahy.Tifrunner.gnm1.ann1.PI6USP Arachis hypogaea HOM05D006766 ORTHO05D008534 3.5e-14 81.6 84 52.4
MELO3C012523.2 Cucumis melo HOM05D006766 ORTHO05D008534 4.5e-14 81.3 90 52.2
Ca_20875_v3 Cicer arietinum L. HOM05D006766 ORTHO05D008534 7.7e-14 80.5 92 47.8
Migut.B00236 Erythranthe guttata HOM05D006766 ORTHO05D008534 1.0e-13 80.1 94 51.1
Lj3g0004404 Lotus japonicus HOM05D006766 ORTHO05D008534 1.3e-13 79.7 94 50.0
Psat7g184720 Pisum sativum HOM05D006766 ORTHO05D008534 2.3e-13 79.0 92 46.7
Hma1.2p1_0633F.1_g192560 Hydrangea macrophylla HOM05D006766 ORTHO05D008534 2.9e-13 78.6 92 53.3
Rhsim11G0177000 Rhododendron simsii HOM05D006766 ORTHO05D008534 1.1e-12 76.6 82 58.5
Lalb_Chr03g0025701 Lupinus albus HOM05D006766 ORTHO05D008534 1.9e-12 75.9 91 47.3
Cc02_g17570 Coffea canephora HOM05D006766 ORTHO05D008534 3.2e-12 75.1 92 51.1
Aqoxy5G01642 Aquilegia oxysepala HOM05D006766 ORTHO05D008534 5.5e-12 74.3 97 52.6
Dinv42065 Davidia involucrata HOM05D006766 ORTHO05D008534 5.5e-12 74.3 88 51.1
Actinidia08228 Actinidia chinensis HOM05D006766 ORTHO05D008534 7.2e-12 73.9 75 60.0
Ah.01g006260 Amaranthus hybridus HOM05D006766 ORTHO05D008534 7.2e-12 73.9 91 49.5
TPR.G19399 Trifolium pratense HOM05D006766 ORTHO05D008534 7.2e-12 73.9 93 44.1
EL10Ac9g21725 Beta vulgaris HOM05D006766 ORTHO05D008534 2.1e-11 72.4 91 49.5
SalBow6G1480 Salvia bowleyana HOM05D006766 ORTHO05D008534 2.8e-11 72.0 90 51.1
BcaNung01271 Brassica carinata HOM05D006766 ORTHO05D008534 3.6e-11 71.6 80 53.8
Lsat_1_v5_gn_9_70521 Lactuca sativa HOM05D006766 ORTHO05D008534 3.6e-11 71.6 88 50.0
Hund06233 Selenicereus undatus HOM05D006766 ORTHO05D008534 3.6e-11 71.6 85 50.6
FAN16G3600 Fragaria x ananassa HOM05D006766 ORTHO05D008534 1.4e-10 69.7 92 45.7
Sabra09G0089100 Salix brachista HOM05D006766 ORTHO05D008534 1.8e-10 69.3 49 65.3
Lj5g0021871 Lotus japonicus HOM05D006766 ORTHO05D008534 2.3e-10 68.9 90 47.8
Medtr4g070030 Medicago truncatula HOM05D006766 ORTHO05D008534 2.3e-10 68.9 94 43.6
RcHm_v2.0_Chr1g0349571 Rosa chinensis HOM05D006766 ORTHO05D008534 3.0e-10 68.6 46 73.9
DCAR_003674 Daucus carota HOM05D006766 ORTHO05D008534 4.0e-10 68.2 82 50.0
CDE04G2003 Ceratophyllum demersum HOM05D006766 ORTHO05D008534 5.2e-10 67.8 95 46.3
Ah.01g019400 Amaranthus hybridus HOM05D001555 ORTHO05D001616 1.2e-09 66.6 95 46.3
Lalb_Chr01g0002551 Lupinus albus HOM05D006766 ORTHO05D008534 2.0e-09 65.9 92 41.3
VMungo1127G0063 Vigna mungo HOM05D006766 ORTHO05D008534 1.7e-08 62.8 83 45.8
HPP92_017358 Vanilla planifolia HOM05D006766 ORTHO05D008534 2.2e-08 62.4 36 77.8
SalBow6G2329 Salvia bowleyana HOM05D006766 ORTHO05D008534 3.7e-08 61.6 40 67.5
Phvul.011G045300 Phaseolus vulgaris HOM05D006766 ORTHO05D008534 4.9e-08 61.2 83 43.4
Glyma.11G117900 Glycine max HOM05D006766 ORTHO05D008534 6.3e-08 60.8 87 41.4
AUR62016736 Chenopodium quinoa HOM05D006766 ORTHO05D008534 8.3e-08 60.5 84 46.4
Dinv36653 Davidia involucrata HOM05D007491 ORTHO05D009489 1.1e-07 60.1 75 45.3
QL05p011176 Quercus lobata HOM05D006766 ORTHO05D008534 1.1e-07 60.1 33 81.8
Zm00001eb066650 Zea mays HOM05D006766 ORTHO05D008534 1.1e-07 60.1 87 46.0
Os01g0551400 Oryza sativa ssp. japonica HOM05D006766 ORTHO05D008534 1.4e-07 59.7 89 46.1
AUR62011324 Chenopodium quinoa HOM05D006766 ORTHO05D008534 3.1e-07 58.5 82 46.3
Carub.0003s1318 Capsella rubella HOM05D007491 ORTHO05D009489 4.1e-07 58.2 82 41.5
AT3G13674 Arabidopsis thaliana HOM05D007491 ORTHO05D009489 5.4e-07 57.8 83 42.2
Os01g0738000 Oryza sativa ssp. japonica HOM05D007293 ORTHO05D009143 5.4e-07 57.8 94 44.7
Glyma.12G043301 Glycine max HOM05D006766 ORTHO05D008534 7.0e-07 57.4 95 42.1
CiPaw.03G229400 Carya illinoinensis HOM05D007491 ORTHO05D009489 9.2e-07 57.0 84 45.2
Prupe.7G233600 Prunus persica HOM05D007491 ORTHO05D009489 9.2e-07 57.0 88 42.0
Phvul.002G312200 Phaseolus vulgaris HOM05D007491 ORTHO05D009489 1.2e-06 56.6 83 44.6
PGR102G1855 Punica granatum HOM05D007491 ORTHO05D009489 1.2e-06 56.6 85 44.7
Zm00001eb433440 Zea mays HOM05D006766 ORTHO05D008534 1.2e-06 56.6 87 44.8
CANSAT78G0421 Cannabis sativa HOM05D007491 ORTHO05D009489 1.6e-06 56.2 88 43.2
Zm00001eb433450 Zea mays HOM05D006766 ORTHO05D008534 3.5e-06 55.1 90 48.9
Aqoxy3G02974 Aquilegia oxysepala HOM05D007293 ORTHO05D009143 4.5e-06 54.7 86 44.2
Cc06_g09900 Coffea canephora HOM05D007491 ORTHO05D009489 5.9e-06 54.3 88 44.3
FvH4_1g04361 Fragaria vesca HOM05D007491 ORTHO05D009489 5.9e-06 54.3 64 46.9
FAN19G0791 Fragaria x ananassa HOM05D007491 ORTHO05D009489 5.9e-06 54.3 64 46.9
Thhalv10021835m.g Eutrema salsugineum HOM05D007491 ORTHO05D009489 7.8e-06 53.9 78 39.7
FAN23G1386 Fragaria x ananassa HOM05D007491 ORTHO05D009489 7.8e-06 53.9 75 45.3
Nn3g16892 Nelumbo nucifera HOM05D007293 ORTHO05D009143 7.8e-06 53.9 42 57.1
GSVIVG01032483001 Vitis vinifera HOM05D007293 ORTHO05D009143 7.8e-06 53.9 81 43.2


User provided reference genes

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