Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc62.15 Carica papaya HOM05D007022 ORTHO05D008868 1.0e-119 433.3 208 100.0
Manes.07G082700 Manihot esculenta HOM05D007022 ORTHO05D008868 1.8e-79 299.7 210 67.6
GSVIVG01031751001 Vitis vinifera HOM05D007022 ORTHO05D008868 2.0e-75 286.2 209 67.9
CiPaw.06G172800 Carya illinoinensis HOM05D007022 ORTHO05D008868 9.4e-73 277.3 207 68.1
PGR042G2146 Punica granatum HOM05D007022 ORTHO05D008868 6.8e-71 271.2 214 65.4
Rhsim11G0166300 Rhododendron simsii HOM05D007022 ORTHO05D008868 7.5e-70 267.7 205 66.8
Dinv23619 Davidia involucrata HOM05D007022 ORTHO05D008868 9.8e-70 267.3 211 66.8
Haze_10076 Corylus avellana HOM05D007022 ORTHO05D008868 3.7e-69 265.4 239 59.4
Potri.009G102400 Populus trichocarpa HOM05D007022 ORTHO05D008868 4.8e-69 265.0 211 64.0
MBI06_g36648_MAGBIO Magnolia biondii HOM05D007022 ORTHO05D008868 1.6e-67 260.0 200 68.0
vmacro02203 Vaccinium macrocarpon HOM05D007022 ORTHO05D008868 2.0e-67 259.6 205 65.9
TWI75G1380 Tripterygium wilfordii HOM05D007022 ORTHO05D008868 7.7e-67 257.7 210 66.7
Nn1g04883 Nelumbo nucifera HOM05D007022 ORTHO05D008868 2.3e-66 256.1 209 64.1
Actinidia12953 Actinidia chinensis HOM05D007022 ORTHO05D008868 6.6e-66 254.6 213 62.9
Ciclev10029362m.g Citrus clementina HOM05D007022 ORTHO05D008868 1.5e-65 253.4 203 63.1
Hma1.2p1_0370F.1_g137830 Hydrangea macrophylla HOM05D007022 ORTHO05D008868 1.9e-65 253.1 213 62.4
QL11p035981 Quercus lobata HOM05D007022 ORTHO05D008868 3.3e-65 252.3 212 65.1
Dinv42154 Davidia involucrata HOM05D007022 ORTHO05D008868 5.5e-65 251.5 204 63.7
CSS0015269 Camellia sinensis var. sinensis HOM05D007022 ORTHO05D008868 8.0e-64 247.7 223 61.9
TAR381G0954 Trochodendron aralioides HOM05D007022 ORTHO05D008868 5.2e-63 245.0 210 61.4
ClCG05G010000 Citrullus lanatus HOM05D007022 ORTHO05D008868 6.8e-63 244.6 211 63.5
COL.COLO4_32660 Corchorus olitorius HOM05D007022 ORTHO05D003154 6.8e-63 244.6 211 58.8
MD10G1094200 Malus domestica HOM05D007022 ORTHO05D008868 1.2e-62 243.8 209 63.2
Thecc.02G100400 Theobroma cacao HOM05D007022 ORTHO05D008868 1.2e-62 243.8 211 58.8
Sed0002892 Sechium edule HOM05D007022 ORTHO05D008868 1.3e-61 240.4 211 62.6
Gohir.D13G038800 Gossypium hirsutum HOM05D007022 ORTHO05D008868 4.9e-61 238.4 212 57.5
Gorai.013G043500 Gossypium raimondii HOM05D007022 ORTHO05D008868 4.9e-61 238.4 212 57.5
Atru.chr5.2709 Acer truncatum HOM05D007022 ORTHO05D008868 6.3e-61 238.0 206 58.7
Gohir.A13G040100 Gossypium hirsutum HOM05D007022 ORTHO05D008868 6.3e-61 238.0 212 57.5
MELO3C019509.2 Cucumis melo HOM05D007022 ORTHO05D008868 1.8e-60 236.5 210 62.9
Nn5g30258 Nelumbo nucifera HOM05D007022 ORTHO05D008868 3.1e-60 235.7 213 60.1
CsaV3_3G018570 Cucumis sativus L. HOM05D007022 ORTHO05D008868 7.0e-60 234.6 212 61.8
CDE04G2473 Ceratophyllum demersum HOM05D007022 ORTHO05D008868 9.2e-60 234.2 206 60.2
Migut.B00344 Erythranthe guttata HOM05D007022 ORTHO05D008868 9.2e-60 234.2 208 59.6
Prupe.8G124000 Prunus persica HOM05D007022 ORTHO05D008868 1.6e-59 233.4 212 59.4
CANSAT25G3754 Cannabis sativa HOM05D007022 ORTHO05D008868 2.0e-59 233.0 205 61.0
SalBow6G3975 Salvia bowleyana HOM05D007022 ORTHO05D008868 1.3e-58 230.3 213 59.2
Oeu007283.1 Olea europaea HOM05D007022 ORTHO05D008868 2.9e-58 229.2 213 56.8
Nitab4.5_0002543g0040 Nicotiana tabacum HOM05D007022 ORTHO05D008868 6.6e-58 228.0 218 56.4
Cc02_g18740 Coffea canephora HOM05D007022 ORTHO05D008868 1.9e-57 226.5 217 55.8
Lj4g0019449 Lotus japonicus HOM05D007022 ORTHO05D008868 7.3e-57 224.6 185 63.8
RcHm_v2.0_Chr6g0257061 Rosa chinensis HOM05D007022 ORTHO05D008868 2.1e-56 223.0 209 56.5
Aqoxy6G01341 Aquilegia oxysepala HOM05D007022 ORTHO05D008868 3.6e-56 222.2 214 52.8
MSTRG.27723 Avicennia marina HOM05D007022 ORTHO05D008868 4.7e-56 221.9 205 57.6
Thhalv10021599m.g Eutrema salsugineum HOM05D007022 ORTHO05D008868 4.7e-56 221.9 208 59.1
Nitab4.5_0007480g0010 Nicotiana tabacum HOM05D007022 ORTHO05D008868 4.0e-55 218.8 208 55.8
AT3G19220 Arabidopsis thaliana HOM05D007022 ORTHO05D008868 1.2e-54 217.2 208 58.7
Actinidia00443 Actinidia chinensis HOM05D007022 ORTHO05D008868 2.6e-54 216.1 189 62.4
AL3G32600 Arabidopsis lyrata HOM05D007022 ORTHO05D008868 2.6e-54 216.1 197 59.9
FvH4_2g06130 Fragaria vesca HOM05D007022 ORTHO05D008868 4.4e-54 215.3 209 55.5
SGA_v2.0_scaffold13G06591 Striga asiatica HOM05D007022 ORTHO05D008868 4.4e-54 215.3 207 57.5
Lalb_Chr16g0384701 Lupinus albus HOM05D007022 ORTHO05D008868 7.5e-54 214.5 203 57.1
Lj9A358T46 Lonicera japonica HOM05D007022 ORTHO05D008868 9.8e-54 214.2 183 60.1
BcaB06g25978 Brassica carinata HOM05D007022 ORTHO05D008868 1.7e-53 213.4 204 57.4
VMungo0251G0366 Vigna mungo HOM05D007022 ORTHO05D008868 6.4e-53 211.5 221 56.1
unitig_26.g10239 Utricularia gibba HOM05D007022 ORTHO05D008868 3.2e-52 209.1 127 73.2
A05p30420 Brassica napus HOM05D007022 ORTHO05D008868 5.4e-52 208.4 206 56.3
BcaC05g28522 Brassica carinata HOM05D007022 ORTHO05D008868 7.0e-52 208.0 202 55.9
Solyc01g108200.3 Solanum lycopersicum HOM05D007022 ORTHO05D008868 7.0e-52 208.0 133 69.9
Sopen01g050430 Solanum pennellii HOM05D007022 ORTHO05D008868 7.0e-52 208.0 133 69.9
Carub.0003s1905 Capsella rubella HOM05D007022 ORTHO05D008868 9.2e-52 207.6 208 56.7
Aa31LG8G6010 Aethionema arabicum HOM05D007022 ORTHO05D008868 1.6e-51 206.8 210 55.7
Ca_18680_v3 Cicer arietinum L. HOM05D007022 ORTHO05D008868 1.6e-51 206.8 201 56.7
Sp3g17290 Schrenkiella parvula HOM05D007022 ORTHO05D008868 1.6e-51 206.8 208 56.2
BolC5t33329H Brassica oleracea HOM05D007022 ORTHO05D008868 2.7e-51 206.1 205 55.1
BraA05t21880Z Brassica rapa HOM05D007022 ORTHO05D008868 3.5e-51 205.7 206 55.8
Psat7g125000 Pisum sativum HOM05D007022 ORTHO05D008868 4.6e-51 205.3 209 54.1
ECA240G1411 Erigeron canadensis HOM05D007022 ORTHO05D008868 8.6e-50 201.1 205 53.2
FAN24G2553 Fragaria x ananassa HOM05D007022 ORTHO05D008868 8.6e-50 201.1 188 56.4
Glyma.07G212100 Glycine max HOM05D007022 ORTHO05D008868 1.1e-49 200.7 208 56.2
FAN15G0654 Fragaria x ananassa HOM05D007022 ORTHO05D008868 1.9e-49 199.9 187 56.7
Peaxi162Scf00016g01823 Petunia axillaris HOM05D007022 ORTHO05D008868 1.9e-49 199.9 208 56.7
PSO675G2542 Papaver somniferum HOM05D007022 ORTHO05D008868 2.5e-49 199.5 198 53.0
Glyma.02G132900 Glycine max HOM05D007022 ORTHO05D008868 3.3e-49 199.1 208 53.8
arahy.Tifrunner.gnm1.ann1.WB2CJ6 Arachis hypogaea HOM05D007022 ORTHO05D008868 7.3e-49 198.0 202 54.0
Hund00236 Selenicereus undatus HOM05D007022 ORTHO05D008868 1.2e-48 197.2 225 49.3
FAN20G2768 Fragaria x ananassa HOM05D007022 ORTHO05D008868 2.8e-48 196.1 187 55.6
Oeu013707.1 Olea europaea HOM05D007022 ORTHO05D008868 3.6e-48 195.7 189 54.5
arahy.Tifrunner.gnm1.ann1.059Z6S Arachis hypogaea HOM05D007022 ORTHO05D008868 4.7e-48 195.3 198 54.5
Lsat_1_v5_gn_9_110080 Lactuca sativa HOM05D007022 ORTHO05D008868 4.7e-48 195.3 206 52.9
TPR.G28492 Trifolium pratense HOM05D007022 ORTHO05D008868 6.2e-48 194.9 184 57.1
Sc08g0000700 Simmondsia chinensis HOM05D005091 ORTHO05D006047 8.0e-48 194.5 144 63.9
THA.LOC104798819 Tarenaya hassleriana HOM05D007022 ORTHO05D008868 8.0e-48 194.5 93 93.5
PSO541G2619 Papaver somniferum HOM05D007022 ORTHO05D008868 2.3e-47 193.0 208 52.9
Phvul.003G292600 Phaseolus vulgaris HOM05D007022 ORTHO05D008868 6.8e-47 191.4 208 53.8
HanXRQChr09g0251721 Helianthus annuus HOM05D007022 ORTHO05D008868 4.4e-46 188.7 118 70.3
HPP92_016383 Vanilla planifolia HOM05D002198 ORTHO05D008868 3.7e-45 185.7 150 58.7
Sopen10g021420 Solanum pennellii HOM05D007022 ORTHO05D008868 3.2e-44 182.6 100 79.0
EL10Ac9g21683 Beta vulgaris HOM05D007022 ORTHO05D008868 9.2e-44 181.0 193 50.8
PGSC0003DMG401025892 Solanum tuberosum HOM05D007022 ORTHO05D008868 1.0e-42 177.6 110 71.8
Ah.01g019040 Amaranthus hybridus HOM05D007022 ORTHO05D008868 8.6e-42 174.5 210 48.6
ATR0100G054 Amborella trichopoda HOM05D007022 ORTHO05D008868 1.2e-40 170.6 138 61.6
Zm00001eb100830 Zea mays HOM05D007022 ORTHO05D008868 6.2e-40 168.3 212 43.9
CDE03G0325 Ceratophyllum demersum HOM05D007022 ORTHO05D008868 5.2e-39 165.2 76 96.1
Medtr4g086255 Medicago truncatula HOM05D007022 ORTHO05D008868 8.3e-37 157.9 136 58.8
Cfa004517 Carpinus fangiana HOM05D007022 ORTHO05D008868 9.2e-36 154.5 145 59.3
Sabra09G0078400 Salix brachista HOM05D007022 ORTHO05D008868 1.2e-35 154.1 210 45.7
AUR62016784 Chenopodium quinoa HOM05D007022 ORTHO05D008868 1.1e-33 147.5 107 63.6
Nitab4.5_0005758g0030 Nicotiana tabacum HOM05D007022 ORTHO05D008868 1.5e-33 147.1 164 47.6
Nitab4.5_0012979g0010 Nicotiana tabacum HOM05D007022 ORTHO05D008868 7.3e-33 144.8 161 49.1
Os09g0458400 Oryza sativa ssp. japonica HOM05D007022 ORTHO05D008868 7.3e-33 144.8 192 44.8
CBR_g29933 Chara braunii HOM05D007022 ORTHO05D008868 1.2e-30 137.5 91 65.9
Pp3c1_42880 Physcomitrium patens HOM05D007022 ORTHO05D008868 2.4e-28 129.8 123 52.8
AagrBONN_evm.TU.Sc2ySwM_368.1030 Anthoceros agrestis HOM05D007022 ORTHO05D008868 1.2e-27 127.5 195 34.9
SMO232G0067 Selaginella moellendorffii HOM05D007022 ORTHO05D008868 1.7e-26 123.6 87 59.8
Pp3c2_400 Physcomitrium patens HOM05D007022 ORTHO05D008868 8.7e-26 121.3 134 45.5
DCAR_022028 Daucus carota HOM05D007022 ORTHO05D008868 7.3e-25 118.2 143 49.7
Mapoly0186s0009 Marchantia polymorpha HOM05D007022 ORTHO05D008868 1.6e-24 117.1 198 41.4
Sopen10g021450 Solanum pennellii HOM05D007022 ORTHO05D008868 6.4e-21 105.1 68 66.2
SEGI_10031 Sequoiadendron giganteum HOM05D007022 ORTHO05D008868 3.0e-18 96.3 69 62.3
Rhsim11G0166200 Rhododendron simsii HOM05D007022 ORTHO05D008868 5.1e-18 95.5 71 67.6
CARHR094630 Cardamine hirsuta HOM05D007022 ORTHO05D008868 1.9e-17 93.6 143 46.2
PGSC0003DMG400006210 Solanum tuberosum HOM05D007022 ORTHO05D008868 1.6e-16 90.5 144 41.7
ECA240G0576 Erigeron canadensis HOM05D007022 ORTHO05D008868 1.2e-14 84.3 141 39.0
Cre07.g339200 Chlamydomonas reinhardtii HOM05D007022 ORTHO05D008868 8.1e-08 61.6 57 42.1


User provided reference genes

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