Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc61.16 Carica papaya HOM05D004059 ORTHO05D004591 1.6e-264 915.6 472 100.0
Dinv36776 Davidia involucrata HOM05D004059 ORTHO05D004591 2.4e-100 370.2 534 46.3
Thecc.09G087400 Theobroma cacao HOM05D004059 ORTHO05D004591 1.6e-99 367.5 534 47.6
Duzib187G0197 Durio zibethinus HOM05D004059 ORTHO05D004591 2.3e-98 363.6 530 46.2
Cfa003070 Carpinus fangiana HOM05D004059 ORTHO05D004591 4.7e-96 355.9 526 45.8
Duzib168G0233 Durio zibethinus HOM05D004059 ORTHO05D004591 8.1e-96 355.1 561 44.7
QL02p062365 Quercus lobata HOM05D004059 ORTHO05D004591 8.1e-96 355.1 519 45.9
Ciclev10007937m.g Citrus clementina HOM05D004059 ORTHO05D004591 1.1e-95 354.8 550 45.1
TAR624G0558 Trochodendron aralioides HOM05D004059 ORTHO05D004591 1.1e-95 354.8 529 45.0
CiPaw.03G214200 Carya illinoinensis HOM05D004059 ORTHO05D004591 6.8e-95 352.1 530 45.1
Hma1.2p1_1838F.1_g304870 Hydrangea macrophylla HOM05D004059 ORTHO05D004591 2.4e-92 343.6 532 44.0
CSS0005796 Camellia sinensis var. sinensis HOM05D004059 ORTHO05D004591 1.0e-90 338.2 521 44.1
TAR636G3314 Trochodendron aralioides HOM05D004059 ORTHO05D004591 5.1e-90 335.9 519 41.6
THA.LOC104818114 Tarenaya hassleriana HOM05D004059 ORTHO05D004591 6.6e-90 335.5 530 44.9
Gohir.D07G011700 Gossypium hirsutum HOM05D004059 ORTHO05D004591 3.6e-88 329.7 528 44.7
Atru.chr7.1612 Acer truncatum HOM05D004059 ORTHO05D004591 1.4e-87 327.8 541 44.4
Potri.006G148800 Populus trichocarpa HOM05D004059 ORTHO05D004591 1.5e-86 324.3 594 41.2
Gorai.001G012400 Gossypium raimondii HOM05D004059 ORTHO05D004591 2.0e-86 323.9 534 44.0
Haze_25925 Corylus avellana HOM05D004059 ORTHO05D004591 5.8e-86 322.4 532 43.2
AT5G56960 Arabidopsis thaliana HOM05D004059 ORTHO05D004591 2.2e-85 320.5 551 43.7
Aa31LG3G12850 Aethionema arabicum HOM05D004059 ORTHO05D004591 1.1e-84 318.2 513 45.2
TWI34G0199 Tripterygium wilfordii HOM05D004059 ORTHO05D004591 2.4e-84 317.0 535 43.0
Manes.16G101000 Manihot esculenta HOM05D004059 ORTHO05D004591 3.2e-84 316.6 559 41.9
Gohir.A05G030300 Gossypium hirsutum HOM05D004059 ORTHO05D004591 4.2e-84 316.2 535 43.6
GSVIVG01015189001 Vitis vinifera HOM05D004059 ORTHO05D004591 4.2e-84 316.2 525 41.0
BcaC03g14194 Brassica carinata HOM05D004059 ORTHO05D004591 7.8e-83 312.0 551 42.8
C02p14760 Brassica napus HOM05D004059 ORTHO05D004591 7.8e-83 312.0 551 42.8
Gorai.009G031900 Gossypium raimondii HOM05D004059 ORTHO05D004591 1.0e-82 311.6 534 42.5
BolC2t07605H Brassica oleracea HOM05D004059 ORTHO05D004591 3.0e-82 310.1 556 42.4
Gohir.D05G031700 Gossypium hirsutum HOM05D004059 ORTHO05D004591 8.7e-82 308.5 535 43.0
MD15G1208900 Malus domestica HOM05D004059 ORTHO05D004591 7.3e-81 305.4 541 43.6
Sabra06G0117700 Salix brachista HOM05D004059 ORTHO05D004591 9.6e-81 305.1 582 39.5
Carub.0008s1744 Capsella rubella HOM05D004059 ORTHO05D004591 2.8e-80 303.5 553 42.3
Prupe.7G207500 Prunus persica HOM05D004059 ORTHO05D004591 6.2e-80 302.4 570 41.4
MD02G1081600 Malus domestica HOM05D004059 ORTHO05D004591 8.1e-80 302.0 558 41.6
AL8G32820 Arabidopsis lyrata HOM05D004059 ORTHO05D004591 1.1e-79 301.6 477 45.9
Actinidia29906 Actinidia chinensis HOM05D004059 ORTHO05D004591 2.4e-79 300.4 481 43.9
Eucgr.C03476 Eucalyptus grandis HOM05D004059 ORTHO05D004591 1.2e-78 298.1 565 41.2
Manes.03G034700 Manihot esculenta HOM05D004059 ORTHO05D004591 2.6e-78 297.0 530 40.2
BraA02t05954Z Brassica rapa HOM05D004059 ORTHO05D004591 3.4e-78 296.6 546 41.4
Nn8g38830 Nelumbo nucifera HOM05D004059 ORTHO05D004591 4.5e-78 296.2 529 38.4
Cc06_g11520 Coffea canephora HOM05D004059 ORTHO05D004591 9.9e-78 295.0 556 41.4
Nn6g35501 Nelumbo nucifera HOM05D004059 ORTHO05D004591 1.4e-76 291.2 522 38.5
Rhsim03G0231600 Rhododendron simsii HOM05D004059 ORTHO05D004591 1.6e-75 287.7 567 40.7
PGR102G2684 Punica granatum HOM05D004059 ORTHO05D004591 2.7e-75 287.0 549 40.6
Sed0008144 Sechium edule HOM05D004059 ORTHO05D004591 6.0e-75 285.8 543 40.1
Oeu017604.1 Olea europaea HOM05D004059 ORTHO05D004591 2.3e-74 283.9 541 38.4
A02p08850 Brassica napus HOM05D004059 ORTHO05D004591 5.1e-74 282.7 546 39.6
FAN19G2456 Fragaria x ananassa HOM05D004059 ORTHO05D004591 5.1e-74 282.7 582 39.9
CSS0003764 Camellia sinensis var. sinensis HOM05D004059 ORTHO05D004591 8.7e-74 282.0 496 41.1
DCAR_011967 Daucus carota HOM05D004059 ORTHO05D004591 1.5e-73 281.2 530 40.6
vmacro06298 Vaccinium macrocarpon HOM05D004059 ORTHO05D004591 1.9e-73 280.8 508 40.9
CARHR270700 Cardamine hirsuta HOM05D004059 ORTHO05D004591 3.1e-71 273.5 482 43.2
Solyc07g039570.3 Solanum lycopersicum HOM05D004059 ORTHO05D004591 3.1e-71 273.5 525 39.8
FAN28G1400 Fragaria x ananassa HOM05D004059 ORTHO05D004591 2.6e-70 270.4 594 38.6
FAN23G2659 Fragaria x ananassa HOM05D004059 ORTHO05D004591 4.5e-70 269.6 590 38.6
FAN26G3139 Fragaria x ananassa HOM05D004059 ORTHO05D004591 9.9e-70 268.5 590 38.5
RcHm_v2.0_Chr2g0093571 Rosa chinensis HOM05D004059 ORTHO05D004591 9.9e-70 268.5 584 38.9
AUR62029052 Chenopodium quinoa HOM05D004059 ORTHO05D004591 3.8e-69 266.5 536 36.9
Nitab4.5_0006053g0020 Nicotiana tabacum HOM05D004059 ORTHO05D004591 7.1e-68 262.3 525 36.8
FvH4_1g07710 Fragaria vesca HOM05D004059 ORTHO05D004591 2.1e-67 260.8 542 40.0
VMungo1309G0851 Vigna mungo HOM05D004059 ORTHO05D004591 7.9e-67 258.8 521 38.6
CAN.G52.7 Capsicum annuum HOM05D004059 ORTHO05D004591 1.0e-66 258.5 520 36.3
FAN26G1668 Fragaria x ananassa HOM05D004059 ORTHO05D004591 3.0e-66 256.9 583 38.1
HanXRQChr03g0060341 Helianthus annuus HOM05D004059 ORTHO05D004591 3.9e-66 256.5 536 36.0
AUR62033947 Chenopodium quinoa HOM05D004059 ORTHO05D004591 1.1e-65 255.0 541 37.2
Glyma.09G064200 Glycine max HOM05D004059 ORTHO05D004591 4.3e-65 253.1 542 35.8
Thhalv10013360m.g Eutrema salsugineum HOM05D004059 ORTHO05D004591 5.6e-65 252.7 505 40.8
ClCG03G015470 Citrullus lanatus HOM05D004059 ORTHO05D004591 1.3e-64 251.5 534 36.7
Lj6g0002908 Lotus japonicus HOM05D004059 ORTHO05D004591 1.3e-64 251.5 539 38.6
Medtr2g039620 Medicago truncatula HOM05D004059 ORTHO05D004591 2.8e-64 250.4 532 38.0
Aqoxy7G04020 Aquilegia oxysepala HOM05D004059 ORTHO05D004591 6.2e-64 249.2 531 35.4
Phvul.009G231600 Phaseolus vulgaris HOM05D004059 ORTHO05D004591 5.3e-63 246.1 521 38.0
Migut.J00583 Erythranthe guttata HOM05D004059 ORTHO05D004591 1.2e-62 245.0 527 38.5
C09p48620 Brassica napus HOM05D004059 ORTHO05D004591 4.5e-62 243.0 542 36.3
Glyma.15G170500 Glycine max HOM05D004059 ORTHO05D004591 1.3e-61 241.5 503 38.0
Peaxi162Scf00028g00036 Petunia axillaris HOM05D004059 ORTHO05D004591 1.3e-61 241.5 493 36.7
CsaV3_1G040580 Cucumis sativus L. HOM05D004059 ORTHO05D004591 3.8e-61 240.0 495 38.0
MBI01_g09949_MAGBIO Magnolia biondii HOM05D004059 ORTHO05D004591 3.8e-61 240.0 478 38.7
SGA_v2.0_scaffold62G21623 Striga asiatica HOM05D004059 ORTHO05D004591 3.8e-61 240.0 529 37.2
Rhsim05G0018600 Rhododendron simsii HOM05D004059 ORTHO05D004591 4.9e-61 239.6 492 39.2
Gohir.A07G011900 Gossypium hirsutum HOM05D004059 ORTHO05D004591 1.9e-60 237.7 385 45.2
Sopen07g018910 Solanum pennellii HOM05D004059 ORTHO05D004591 2.5e-60 237.3 488 38.7
vmacro17254 Vaccinium macrocarpon HOM05D004059 ORTHO05D004591 9.3e-60 235.3 452 38.5
SalBow6G2434 Salvia bowleyana HOM05D004059 ORTHO05D004591 1.6e-59 234.6 516 36.6
Nitab4.5_0002593g0060 Nicotiana tabacum HOM05D004059 ORTHO05D004591 2.1e-59 234.2 524 35.3
TPR.G13416 Trifolium pratense HOM05D004059 ORTHO05D004591 4.6e-59 233.0 550 36.2
Gorai.010G083900 Gossypium raimondii HOM05D004059 ORTHO05D004591 1.3e-58 231.5 464 39.2
Lj4C294G8 Lonicera japonica HOM05D004059 ORTHO05D004591 1.5e-57 228.0 491 37.3
Psat1g140200 Pisum sativum HOM05D004059 ORTHO05D004591 1.9e-57 227.6 536 34.3
Lsat_1_v5_gn_7_36701 Lactuca sativa HOM05D004059 ORTHO05D004591 2.5e-57 227.3 478 37.7
Lj4g0028074 Lotus japonicus HOM05D004059 ORTHO05D004591 4.3e-57 226.5 499 35.7
DCAR_031333 Daucus carota HOM05D004059 ORTHO05D004591 5.7e-57 226.1 497 34.4
Lj7A677T52 Lonicera japonica HOM05D004059 ORTHO05D004591 7.4e-57 225.7 391 43.2
ECA240G1274 Erigeron canadensis HOM05D004059 ORTHO05D004591 1.4e-55 221.5 543 34.8
SGA_v2.0_scaffold23G10028 Striga asiatica HOM05D004059 ORTHO05D004591 1.8e-55 221.1 528 35.0
MELO3C015488.2 Cucumis melo HOM05D004059 ORTHO05D004591 1.2e-54 218.4 476 36.8
COL.COLO4_18190 Corchorus olitorius HOM05D004059 ORTHO05D004591 1.5e-54 218.0 459 39.2
CiPaw.04G148500 Carya illinoinensis HOM05D004059 ORTHO05D004591 2.0e-54 217.6 389 44.5
PSO210G4563 Papaver somniferum HOM05D004059 ORTHO05D004591 2.6e-54 217.2 561 33.9
Gohir.D06G071950 Gossypium hirsutum HOM05D004059 ORTHO05D004591 1.0e-53 215.3 484 36.8
arahy.Tifrunner.gnm1.ann1.H4FASW Arachis hypogaea HOM05D004059 ORTHO05D004591 1.7e-53 214.5 485 35.9
PSO210G1620 Papaver somniferum HOM05D004059 ORTHO05D004591 2.2e-53 214.2 561 33.2
BcaB05g22300 Brassica carinata HOM05D004059 ORTHO05D004591 2.9e-53 213.8 453 38.6
EL10Ac8g19192 Beta vulgaris HOM05D004059 ORTHO05D004591 5.0e-53 213.0 498 34.7
Glyma.17G054000 Glycine max HOM05D004059 ORTHO05D004591 1.2e-51 208.4 543 33.1
PGSC0003DMG400022043 Solanum tuberosum HOM05D004059 ORTHO05D004591 1.1e-49 201.8 385 41.8
Lalb_Chr11g0074551 Lupinus albus HOM05D004059 ORTHO05D004591 9.7e-49 198.7 381 42.0
CANSAT56G2242 Cannabis sativa HOM05D004059 ORTHO05D004591 1.1e-47 195.3 662 29.5
Lj4C294T9 Lonicera japonica HOM05D004059 ORTHO05D004591 2.0e-46 191.0 397 38.3
Sp6g18670 Schrenkiella parvula HOM05D004059 ORTHO05D004591 2.6e-46 190.7 237 52.7
VMungo1215G3226 Vigna mungo HOM05D004059 ORTHO05D004591 1.3e-45 188.3 520 33.5
ATR0749G078 Amborella trichopoda HOM05D004059 ORTHO05D004591 1.7e-45 188.0 518 32.2
Lalb_Chr08g0232291 Lupinus albus HOM05D004059 ORTHO05D004591 8.5e-45 185.7 376 39.1
Peaxi162Scf00498g00042 Petunia axillaris HOM05D004059 ORTHO05D004591 1.2e-43 181.8 369 39.6
Hund25946 Selenicereus undatus HOM05D004059 ORTHO05D004591 1.6e-43 181.4 383 38.4
THA.LOC104811746 Tarenaya hassleriana HOM05D004059 ORTHO05D004591 8.8e-42 175.6 285 42.8
BcaB08g36035 Brassica carinata HOM05D004059 ORTHO05D004591 1.5e-41 174.9 450 36.4
arahy.Tifrunner.gnm1.ann1.MX4JUX Arachis hypogaea HOM05D004059 ORTHO05D004591 2.0e-41 174.5 507 32.0
unitig_749.g14229 Utricularia gibba HOM05D004059 ORTHO05D004591 2.0e-41 174.5 508 31.5
Sc08g0008540 Simmondsia chinensis HOM05D004059 ORTHO05D004591 2.6e-41 174.1 511 31.9
MBI04_g36310_MAGBIO Magnolia biondii HOM05D004059 ORTHO05D004591 1.4e-39 168.3 496 31.9
MELO3C004627.2 Cucumis melo HOM05D004059 ORTHO05D004591 7.0e-39 166.0 486 31.3
BcaC04g20035 Brassica carinata HOM05D004059 ORTHO05D004591 2.1e-35 154.5 451 32.6
Peaxi162Scf00498g00056 Petunia axillaris HOM05D004059 ORTHO05D004591 1.0e-34 152.1 361 38.5
arahy.Tifrunner.gnm1.ann1.0BQ45N Arachis hypogaea HOM05D004059 ORTHO05D004591 2.3e-34 151.0 532 29.5
PGSC0003DMG400000335 Solanum tuberosum HOM05D000597 ORTHO05D004591 1.5e-33 148.3 334 34.4
Phvul.003G135700 Phaseolus vulgaris HOM05D004059 ORTHO05D004591 4.8e-32 143.3 499 30.1
Actinidia38451 Actinidia chinensis HOM05D004059 ORTHO05D004591 6.3e-32 142.9 182 51.1
CAN.G3656.1 Capsicum annuum HOM05D004059 ORTHO05D004591 8.2e-32 142.5 363 33.9
VMungo1215G0279 Vigna mungo HOM05D004059 ORTHO05D004591 3.1e-31 140.6 499 29.7
BolC9t57704H Brassica oleracea HOM05D004059 ORTHO05D004591 1.2e-30 138.7 409 32.5
HanXRQChr09g0238101 Helianthus annuus HOM05D004059 ORTHO05D004591 4.5e-30 136.7 357 35.6
CsaV3_2G001440 Cucumis sativus L. HOM05D004059 ORTHO05D004591 5.0e-29 133.3 495 30.7
Actinidia38450 Actinidia chinensis HOM05D004059 ORTHO05D004591 7.2e-28 129.4 219 42.0
CAN.G1583.1 Capsicum annuum HOM05D000597 ORTHO05D004591 6.1e-27 126.3 183 44.3
CDE04G0617 Ceratophyllum demersum HOM05D004059 ORTHO05D004591 5.2e-26 123.2 358 29.6
ClCG11G001730 Citrullus lanatus HOM05D004059 ORTHO05D004591 5.2e-26 123.2 430 28.4
Peaxi162Scf00498g00054 Petunia axillaris HOM05D004059 ORTHO05D004591 3.7e-24 117.1 285 37.9
BolC9t57705H Brassica oleracea HOM05D004059 ORTHO05D004591 9.1e-23 112.5 121 50.4
TAR383G1057 Trochodendron aralioides HOM05D004059 ORTHO05D004591 4.5e-22 110.2 438 27.2
HPP92_026782 Vanilla planifolia HOM05D004059 ORTHO05D004591 7.7e-22 109.4 459 28.3
Dinv42328 Davidia involucrata HOM05D004059 ORTHO05D004591 6.5e-21 106.3 219 40.2
Hma1.2p1_0672F.1_g201130 Hydrangea macrophylla HOM05D004059 ORTHO05D004591 6.5e-21 106.3 266 35.3
Peaxi162Scf00498g00537 Petunia axillaris HOM05D000597 ORTHO05D004591 7.2e-20 102.8 212 37.7
unitig_78.g29617 Utricularia gibba HOM05D004059 ORTHO05D004591 6.1e-19 99.8 344 29.4
Sed0013460 Sechium edule HOM05D004059 ORTHO05D004591 2.3e-18 97.8 241 35.3
Dinv42329 Davidia involucrata HOM05D004059 ORTHO05D004591 5.2e-18 96.7 179 40.2
HPP92_023889 Vanilla planifolia HOM05D004059 ORTHO05D004591 8.8e-18 95.9 432 29.4
CDE06G2535 Ceratophyllum demersum HOM05D004059 ORTHO05D004591 1.2e-17 95.5 264 29.5
HPP92_023832 Vanilla planifolia HOM05D004059 ORTHO05D004591 2.6e-17 94.4 429 28.4
SalBow1G7755 Salvia bowleyana HOM05D004059 ORTHO05D004591 2.4e-15 87.8 271 30.6
Zm00001eb385110 Zea mays HOM05D004059 ORTHO05D004591 2.4e-15 87.8 506 26.5
AL290U10010 Arabidopsis lyrata HOM05D004059 ORTHO05D004591 3.5e-14 84.0 75 57.3
Nitab4.5_0002824g0140 Nicotiana tabacum HOM05D004059 ORTHO05D004591 7.7e-14 82.8 122 42.6
Zm00001eb240050 Zea mays HOM05D004059 ORTHO05D004591 1.5e-12 78.6 596 23.5
Rhsim11G0120500 Rhododendron simsii HOM05D000101 ORTHO05D002559 4.2e-12 77.0 288 30.9
Glyma.13G105400 Glycine max HOM05D004059 ORTHO05D004591 5.5e-12 76.6 207 34.3
Zm00001eb160210 Zea mays HOM05D004059 ORTHO05D004591 8.0e-11 72.8 181 34.3
Sed0000136 Sechium edule HOM05D004059 ORTHO05D004591 1.8e-10 71.6 119 37.8
Os01g0575200 Oryza sativa ssp. japonica HOM05D004059 ORTHO05D004591 8.9e-10 69.3 172 34.3
Os06g0570900 Oryza sativa ssp. japonica HOM05D004059 ORTHO05D004591 8.9e-10 69.3 260 30.4
Nitab4.5_0002824g0150 Nicotiana tabacum HOM05D004059 ORTHO05D004591 1.2e-09 68.9 121 38.8
Zm00001eb120960 Zea mays HOM05D004059 ORTHO05D004591 2.0e-09 68.2 268 28.7
Dinv04215 Davidia involucrata HOM05D004059 ORTHO05D000135 5.7e-09 66.6 64 48.4
Os05g0199800 Oryza sativa ssp. japonica HOM05D004059 ORTHO05D004591 5.7e-09 66.6 176 34.1
SalBow1G5126 Salvia bowleyana HOM05D004059 ORTHO05D004591 5.7e-09 66.6 121 41.3
Zm00001eb337860 Zea mays HOM05D004059 ORTHO05D004591 7.5e-09 66.2 240 29.2
Zm00001eb357120 Zea mays HOM05D004059 ORTHO05D004591 9.2e-07 59.3 158 31.6
Peaxi162Scf00221g00512 Petunia axillaris HOM05D004059 ORTHO05D004591 2.7e-06 57.8 65 52.3
Os01g0196300 Oryza sativa ssp. japonica HOM05D004059 ORTHO05D004591 5.9e-06 56.6 136 34.6


User provided reference genes

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