Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc604.3 Carica papaya HOM05D006437 ORTHO05D007973 1.9e-36 155.2 74 100.0
Nn4g24140 Nelumbo nucifera HOM05D006437 ORTHO05D007973 3.8e-32 141.0 74 86.5
SalBow7G1639 Salvia bowleyana HOM05D006437 ORTHO05D007973 3.8e-32 141.0 74 86.5
AUR62023238 Chenopodium quinoa HOM05D006437 ORTHO05D007973 1.9e-31 138.7 74 85.1
Ciclev10013249m.g Citrus clementina HOM05D006437 ORTHO05D007973 3.2e-31 137.9 74 83.8
TPR.G15845 Trifolium pratense HOM05D006437 ORTHO05D007973 3.2e-31 137.9 74 85.1
EL10Ac2g04484 Beta vulgaris HOM05D006437 ORTHO05D007973 7.1e-31 136.7 74 82.4
CANSAT78G0649 Cannabis sativa HOM05D006437 ORTHO05D007973 7.1e-31 136.7 74 83.8
Phvul.001G231901 Phaseolus vulgaris HOM05D006437 ORTHO05D007973 9.3e-31 136.3 74 81.1
AUR62023191 Chenopodium quinoa HOM05D006437 ORTHO05D007973 1.2e-30 136.0 74 82.4
Eucgr.F02822 Eucalyptus grandis HOM05D006437 ORTHO05D007973 2.1e-30 135.2 74 83.8
Lj6g0018768 Lotus japonicus HOM05D006437 ORTHO05D007973 2.1e-30 135.2 74 81.1
MD09G1261500 Malus domestica HOM05D006437 ORTHO05D007973 2.1e-30 135.2 73 83.6
TAR629G2663 Trochodendron aralioides HOM05D006437 ORTHO05D007973 2.1e-30 135.2 74 82.4
CiPaw.03G068600 Carya illinoinensis HOM05D006437 ORTHO05D007973 2.7e-30 134.8 74 81.1
Medtr3g067715 Medicago truncatula HOM05D006437 ORTHO05D007973 3.5e-30 134.4 74 82.4
Nn3g18216 Nelumbo nucifera HOM05D006437 ORTHO05D007973 3.5e-30 134.4 74 81.1
PSO017G0604 Papaver somniferum HOM05D006437 ORTHO05D007973 3.5e-30 134.4 74 77.0
PSO478G4394 Papaver somniferum HOM05D006437 ORTHO05D007973 3.5e-30 134.4 74 77.0
PGR042G3666 Punica granatum HOM05D006437 ORTHO05D007973 3.5e-30 134.4 74 82.4
TAR371G0259 Trochodendron aralioides HOM05D006437 ORTHO05D007973 3.5e-30 134.4 74 81.1
Aqoxy5G01129 Aquilegia oxysepala HOM05D006437 ORTHO05D007973 4.6e-30 134.0 74 77.0
Migut.L00468 Erythranthe guttata HOM05D006437 ORTHO05D007973 4.6e-30 134.0 74 81.1
HanXRQChr07g0193741 Helianthus annuus HOM05D006437 ORTHO05D007973 4.6e-30 134.0 73 80.8
MELO3C020290.2 Cucumis melo HOM05D006437 ORTHO05D007973 6.0e-30 133.7 74 81.1
Sed0002962 Sechium edule HOM05D006437 ORTHO05D007973 7.8e-30 133.3 73 82.2
Cfa007843 Carpinus fangiana HOM05D006437 ORTHO05D007973 1.0e-29 132.9 74 81.1
ClCG05G010950 Citrullus lanatus HOM05D006437 ORTHO05D007973 1.0e-29 132.9 74 79.7
ECA238G0319 Erigeron canadensis HOM05D006437 ORTHO05D007973 1.0e-29 132.9 73 79.5
Glyma.18G038851 Glycine max HOM05D006437 ORTHO05D007973 1.0e-29 132.9 74 79.7
Nitab4.5_0004399g0060 Nicotiana tabacum HOM05D006437 ORTHO05D007973 1.0e-29 132.9 74 79.7
Solyc02g091390.3 Solanum lycopersicum HOM05D006437 ORTHO05D007973 1.0e-29 132.9 74 79.7
Sopen02g036010 Solanum pennellii HOM05D006437 ORTHO05D007973 1.0e-29 132.9 74 79.7
PGSC0003DMG400030646 Solanum tuberosum HOM05D006437 ORTHO05D007973 1.0e-29 132.9 74 79.7
Glyma.11G218400 Glycine max HOM05D006437 ORTHO05D007973 1.3e-29 132.5 74 79.7
Medtr3g067720 Medicago truncatula HOM05D006437 ORTHO05D007973 1.3e-29 132.5 73 82.2
Lalb_Chr10g0104491 Lupinus albus HOM05D006437 ORTHO05D007973 1.7e-29 132.1 74 79.7
Thecc.04G121100 Theobroma cacao HOM05D006437 ORTHO05D007973 1.7e-29 132.1 74 79.7
TAR371G1269 Trochodendron aralioides HOM05D006437 ORTHO05D007973 1.7e-29 132.1 74 79.7
Ca_08164_v3 Cicer arietinum L. HOM05D006437 ORTHO05D007973 2.3e-29 131.7 72 81.9
CSS0019264 Camellia sinensis var. sinensis HOM05D006437 ORTHO05D007973 3.9e-29 131.0 74 79.7
Lsat_1_v5_gn_2_81461 Lactuca sativa HOM05D006437 ORTHO05D007973 6.6e-29 130.2 73 79.5
Cc07_g08170 Coffea canephora HOM05D006437 ORTHO05D007973 8.7e-29 129.8 72 79.2
Manes.02G074600 Manihot esculenta HOM05D006437 ORTHO05D007973 1.1e-28 129.4 73 78.1
GSVIVG01030860001 Vitis vinifera HOM05D006437 ORTHO05D007973 1.5e-28 129.0 72 80.6
Haze_14223 Corylus avellana HOM05D006437 ORTHO05D007973 4.3e-28 127.5 74 74.3
Zm00001eb158640 Zea mays HOM05D006437 ORTHO05D007973 4.3e-28 127.5 72 79.2
FAN15G1984 Fragaria x ananassa HOM05D006437 ORTHO05D007973 7.3e-28 126.7 69 82.6
QL11p004106 Quercus lobata HOM05D006437 ORTHO05D007973 7.3e-28 126.7 73 78.1
Aa31LG5G13890 Aethionema arabicum HOM05D006437 ORTHO05D007973 9.6e-28 126.3 72 77.8
THA.LOC104820840 Tarenaya hassleriana HOM05D006437 ORTHO05D007973 9.6e-28 126.3 72 77.8
CSS0043713 Camellia sinensis var. sinensis HOM05D006437 ORTHO05D007973 1.3e-27 125.9 69 81.2
AUR62023239 Chenopodium quinoa HOM05D006437 ORTHO05D007973 1.3e-27 125.9 73 75.3
Os01g0644200 Oryza sativa ssp. japonica HOM05D006437 ORTHO05D007973 1.3e-27 125.9 72 76.4
Hma1.2p1_0832F.1_g225650 Hydrangea macrophylla HOM05D006437 ORTHO05D007973 2.1e-27 125.2 73 72.6
Potri.017G128600 Populus trichocarpa HOM05D006437 ORTHO05D007973 2.1e-27 125.2 73 76.7
AUR62023192 Chenopodium quinoa HOM05D006437 ORTHO05D007973 2.8e-27 124.8 73 74.0
FvH4_5g32381 Fragaria vesca HOM05D006437 ORTHO05D007973 3.6e-27 124.4 66 86.4
Dinv19010 Davidia involucrata HOM05D006437 ORTHO05D007973 4.8e-27 124.0 65 83.1
FAN27G3274 Fragaria x ananassa HOM05D006437 ORTHO05D007973 1.1e-26 122.9 69 79.7
Lalb_Chr10g0104501 Lupinus albus HOM05D006437 ORTHO05D007973 1.4e-26 122.5 75 73.3
BcaC05g30279 Brassica carinata HOM05D006437 ORTHO05D007973 2.4e-26 121.7 72 75.0
Thhalv10022211m.g Eutrema salsugineum HOM05D006437 ORTHO05D007973 3.1e-26 121.3 72 75.0
Aqoxy7G00638 Aquilegia oxysepala HOM05D006437 ORTHO05D007973 4.0e-26 120.9 71 73.2
BcaC04g18789 Brassica carinata HOM05D006437 ORTHO05D007973 5.3e-26 120.6 74 70.3
RcHm_v2.0_Chr1g0370661 Rosa chinensis HOM05D006437 ORTHO05D007973 5.3e-26 120.6 69 76.8
AL3G12980 Arabidopsis lyrata HOM05D006437 ORTHO05D007973 9.0e-26 119.8 72 73.6
AT3G03341 Arabidopsis thaliana HOM05D006437 ORTHO05D007973 9.0e-26 119.8 72 73.6
Carub.0003s0252 Capsella rubella HOM05D006437 ORTHO05D007973 9.0e-26 119.8 72 73.6
CARHR077390 Cardamine hirsuta HOM05D006437 ORTHO05D007973 9.0e-26 119.8 72 73.6
DCAR_015248 Daucus carota HOM05D006437 ORTHO05D007973 9.0e-26 119.8 70 75.7
Sp3g02370 Schrenkiella parvula HOM05D006437 ORTHO05D007973 1.2e-25 119.4 72 73.6
BcaC09g47742 Brassica carinata HOM05D006437 ORTHO05D007973 1.5e-25 119.0 72 72.2
A06p26360 Brassica napus HOM05D006437 ORTHO05D007973 1.5e-25 119.0 72 72.2
BNapus_Darmor_BZH_scaffold_162p00120 Brassica napus HOM05D006437 ORTHO05D007973 1.5e-25 119.0 72 72.2
BNapus_Darmor_BZH_scaffold_78p00110 Brassica napus HOM05D006437 ORTHO05D007973 1.5e-25 119.0 72 72.2
BolC1t05835H Brassica oleracea HOM05D006437 ORTHO05D007973 1.5e-25 119.0 72 72.2
Thhalv10015148m.g Eutrema salsugineum HOM05D006437 ORTHO05D007973 2.0e-25 118.6 74 68.9
Carub.0006s1569 Capsella rubella HOM05D006437 ORTHO05D007973 2.6e-25 118.2 74 68.9
CARHR195740 Cardamine hirsuta HOM05D006437 ORTHO05D007973 3.4e-25 117.9 74 68.9
BcaC09g47741 Brassica carinata HOM05D006437 ORTHO05D007973 5.8e-25 117.1 72 72.2
AL6G28540 Arabidopsis lyrata HOM05D006437 ORTHO05D007973 7.6e-25 116.7 74 67.6
Pp3c24_9690 Physcomitrium patens HOM05D006437 ORTHO05D007973 7.6e-25 116.7 72 70.8
BraA01t04584Z Brassica rapa HOM05D006437 ORTHO05D007973 2.2e-24 115.2 72 70.8
SMO111G0099 Selaginella moellendorffii HOM05D006437 ORTHO05D007973 2.2e-24 115.2 72 70.8
CsaV3_1G027840 Cucumis sativus L. HOM05D006437 ORTHO05D007973 2.9e-24 114.8 67 71.6
CsaV3_3G021640 Cucumis sativus L. HOM05D006437 ORTHO05D007973 2.9e-24 114.8 67 71.6
PSO017G3771 Papaver somniferum HOM05D006437 ORTHO05D007973 2.9e-24 114.8 69 71.0
PSO478G0303 Papaver somniferum HOM05D006437 ORTHO05D007973 2.9e-24 114.8 69 71.0
Mapoly0046s0059 Marchantia polymorpha HOM05D006437 ORTHO05D007973 6.4e-24 113.6 72 63.9
Pp3c8_12730 Physcomitrium patens HOM05D006437 ORTHO05D007973 8.4e-24 113.2 72 68.1
Pp3c8_12731 Physcomitrium patens HOM05D006437 ORTHO05D007973 8.4e-24 113.2 72 68.1
FAN20G1691 Fragaria x ananassa HOM05D006874 ORTHO05D008334 1.1e-23 112.8 62 79.0
A10p21920 Brassica napus HOM05D006437 ORTHO05D007973 1.9e-23 112.1 67 71.6
Prupe.3G158900 Prunus persica HOM05D006437 ORTHO05D007973 2.4e-23 111.7 60 78.3
AL288U10020 Arabidopsis lyrata HOM05D006437 ORTHO05D007973 3.2e-23 111.3 72 70.8
C09p59670 Brassica napus HOM05D006437 ORTHO05D007973 3.2e-23 111.3 66 72.7
BolC9t58806H Brassica oleracea HOM05D006437 ORTHO05D007973 3.2e-23 111.3 66 72.7
BraA10t44251Z Brassica rapa HOM05D006437 ORTHO05D007973 3.2e-23 111.3 66 72.7
Mapoly0046s0058 Marchantia polymorpha HOM05D006437 ORTHO05D007973 3.2e-23 111.3 72 68.1
MELO3C020291.2 Cucumis melo HOM05D006437 ORTHO05D007973 5.4e-23 110.5 74 68.9
SMO111G0160 Selaginella moellendorffii HOM05D006437 ORTHO05D007973 1.6e-22 109.0 72 65.3
SMO111G0173 Selaginella moellendorffii HOM05D006437 ORTHO05D007973 1.6e-22 109.0 72 65.3
SMO293G0011 Selaginella moellendorffii HOM05D006437 ORTHO05D007973 1.6e-22 109.0 72 65.3
SMO111G0149 Selaginella moellendorffii HOM05D006437 ORTHO05D007973 2.1e-22 108.6 72 65.3
Pp3c4_12160 Physcomitrium patens HOM05D006437 ORTHO05D007973 1.3e-21 105.9 72 59.7
BcaB08g36768 Brassica carinata HOM05D002536 ORTHO05D007973 2.3e-21 105.1 68 66.2
Peaxi162Scf00118g00018 Petunia axillaris HOM05D006437 ORTHO05D007973 2.3e-21 105.1 62 74.2
Pp3c23_9530 Physcomitrium patens HOM05D006437 ORTHO05D007973 2.3e-21 105.1 74 59.5
Pp3c19_9840 Physcomitrium patens HOM05D006437 ORTHO05D007973 8.7e-21 103.2 74 58.1
Pp3c19_5460 Physcomitrium patens HOM05D006437 ORTHO05D007973 1.1e-20 102.8 74 58.1
Pp3c19_5500 Physcomitrium patens HOM05D006437 ORTHO05D007973 1.1e-20 102.8 74 58.1
Pp3c21_13210 Physcomitrium patens HOM05D006437 ORTHO05D007973 2.5e-20 101.7 74 56.8
SEGI_27045 Sequoiadendron giganteum HOM05D006437 ORTHO05D007973 4.3e-20 100.9 69 60.9
Mapoly0009s0147 Marchantia polymorpha HOM05D006437 ORTHO05D007973 9.6e-20 99.8 70 60.0
SEGI_20637 Sequoiadendron giganteum HOM05D006437 ORTHO05D007973 9.6e-20 99.8 69 60.9
Aqoxy7G00636 Aquilegia oxysepala HOM05D006437 ORTHO05D007973 1.6e-19 99.0 62 69.4
Rhsim08G0086000 Rhododendron simsii HOM05D006437 ORTHO05D007973 5.3e-18 94.0 74 60.8
TAR371G0835 Trochodendron aralioides HOM05D006437 ORTHO05D007973 7.6e-17 90.1 52 75.0
SEGI_23307 Sequoiadendron giganteum HOM05D006437 ORTHO05D007973 3.8e-16 87.8 58 70.7
TAR371G0317 Trochodendron aralioides HOM05D006437 ORTHO05D007973 2.4e-15 85.1 51 72.5
Cre13.g575701 Chlamydomonas reinhardtii HOM05D006437 ORTHO05D007973 5.3e-10 67.4 70 45.7
Cre03.g207152 Chlamydomonas reinhardtii HOM05D006437 ORTHO05D007973 1.9e-07 58.9 71 47.9
Cre03.g207100 Chlamydomonas reinhardtii HOM05D006437 ORTHO05D007973 4.2e-07 57.8 72 41.7


User provided reference genes

Program Settings