Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc60.94 Carica papaya HOM05D006667 ORTHO05D008387 1.0e-139 500.7 408 100.0
Dinv07500 Davidia involucrata HOM05D006667 ORTHO05D008387 8.5e-102 374.8 407 81.6
Actinidia04346 Actinidia chinensis HOM05D006667 ORTHO05D008387 2.5e-101 373.2 407 77.4
Rhsim12G0089400 Rhododendron simsii HOM05D006667 ORTHO05D008387 3.2e-101 372.9 407 77.9
Sabra05G0073100 Salix brachista HOM05D006667 ORTHO05D008387 3.2e-101 372.9 399 78.2
Prupe.1G349400 Prunus persica HOM05D006667 ORTHO05D008387 7.2e-101 371.7 406 76.6
CSS0023228 Camellia sinensis var. sinensis HOM05D006667 ORTHO05D008387 1.2e-98 364.4 408 82.1
THA.LOC104819372 Tarenaya hassleriana HOM05D006667 ORTHO05D008387 1.2e-98 364.4 407 80.1
Aa31LG11G2790 Aethionema arabicum HOM05D006667 ORTHO05D008387 1.7e-97 360.5 408 79.9
C07p44230 Brassica napus HOM05D006667 ORTHO05D008387 2.8e-97 359.8 408 80.4
VMungo0720G1985 Vigna mungo HOM05D006667 ORTHO05D008387 1.4e-96 357.5 407 74.7
FvH4_4g37160 Fragaria vesca HOM05D006667 ORTHO05D008387 7.0e-96 355.1 405 76.3
TAR622G0133 Trochodendron aralioides HOM05D006667 ORTHO05D008387 7.0e-96 355.1 405 77.3
FAN12G3199 Fragaria x ananassa HOM05D006667 ORTHO05D008387 1.6e-95 354.0 405 76.0
Medtr1g114610 Medicago truncatula HOM05D006667 ORTHO05D008387 2.7e-95 353.2 408 74.8
QL03p045401 Quercus lobata HOM05D006667 ORTHO05D008387 1.0e-94 351.3 406 77.1
CARHR190200 Cardamine hirsuta HOM05D006667 ORTHO05D008387 1.7e-94 350.5 408 79.2
BraA06t26360Z Brassica rapa HOM05D006667 ORTHO05D008387 3.8e-94 349.4 408 78.7
A06p34280 Brassica napus HOM05D006667 ORTHO05D008387 6.5e-94 348.6 408 81.9
A02p41020 Brassica napus HOM05D006667 ORTHO05D008387 8.5e-94 348.2 407 76.2
BolC7t44948H Brassica oleracea HOM05D006667 ORTHO05D008387 1.1e-93 347.8 408 81.6
RcHm_v2.0_Chr4g0446961 Rosa chinensis HOM05D006667 ORTHO05D008387 4.2e-93 345.9 406 75.4
C02p60910 Brassica napus HOM05D006667 ORTHO05D008387 1.6e-92 344.0 407 74.7
BcaC03g18029 Brassica carinata HOM05D006667 ORTHO05D008387 2.1e-92 343.6 407 74.7
BraA02t09050Z Brassica rapa HOM05D006667 ORTHO05D008387 2.1e-92 343.6 407 75.9
Thhalv10004329m.g Eutrema salsugineum HOM05D006667 ORTHO05D008387 2.1e-92 343.6 408 77.5
AT5G23340 Arabidopsis thaliana HOM05D006667 ORTHO05D008387 2.7e-92 343.2 408 80.4
CsaV3_5G029020 Cucumis sativus L. HOM05D006667 ORTHO05D008387 4.7e-92 342.4 408 73.5
Psat6g234200 Pisum sativum HOM05D006667 ORTHO05D008387 4.7e-92 342.4 406 73.4
Potri.005G088800 Populus trichocarpa HOM05D006667 ORTHO05D008387 8.0e-92 341.7 399 75.2
MELO3C011757.2 Cucumis melo HOM05D006667 ORTHO05D008387 1.4e-91 340.9 408 73.3
CiPaw.05G172300 Carya illinoinensis HOM05D006667 ORTHO05D008387 4.0e-91 339.3 398 77.1
Migut.L00803 Erythranthe guttata HOM05D006667 ORTHO05D008387 5.2e-91 339.0 405 76.3
Lj6A708T61 Lonicera japonica HOM05D006667 ORTHO05D008387 5.2e-91 339.0 406 74.9
Lj6A713T75 Lonicera japonica HOM05D006667 ORTHO05D008387 5.2e-91 339.0 406 74.9
Peaxi162Scf00681g00319 Petunia axillaris HOM05D006667 ORTHO05D008387 5.2e-91 339.0 408 75.2
arahy.Tifrunner.gnm1.ann1.IH6UK4 Arachis hypogaea HOM05D006667 ORTHO05D008387 6.8e-91 338.6 407 73.7
AL6G34600 Arabidopsis lyrata HOM05D006667 ORTHO05D008387 1.5e-90 337.4 408 76.5
Sp2g23820 Schrenkiella parvula HOM05D006667 ORTHO05D008387 2.0e-90 337.0 408 77.2
Hma1.2p1_0044F.1_g026320 Hydrangea macrophylla HOM05D006667 ORTHO05D008387 3.4e-90 336.3 396 80.8
Sabra07G0063900 Salix brachista HOM05D006667 ORTHO05D008387 1.3e-89 334.3 469 59.7
Lj5g0023243 Lotus japonicus HOM05D006667 ORTHO05D008387 1.7e-89 334.0 405 73.6
Aqoxy3G04313 Aquilegia oxysepala HOM05D006667 ORTHO05D008387 2.2e-89 333.6 396 72.0
PGSC0003DMG400011513 Solanum tuberosum HOM05D006667 ORTHO05D008387 2.2e-89 333.6 404 72.8
Lalb_Chr02g0143651 Lupinus albus HOM05D006667 ORTHO05D008387 1.1e-88 331.3 407 72.5
Sed0011343 Sechium edule HOM05D006667 ORTHO05D008387 7.0e-88 328.6 406 74.9
Manes.04G162700 Manihot esculenta HOM05D006667 ORTHO05D008387 9.1e-88 328.2 405 77.0
arahy.Tifrunner.gnm1.ann1.F8B6JQ Arachis hypogaea HOM05D006667 ORTHO05D008387 2.0e-87 327.0 392 74.5
Gohir.D12G135900 Gossypium hirsutum HOM05D006667 ORTHO05D008387 2.7e-87 326.6 405 76.5
Gorai.008G147100 Gossypium raimondii HOM05D006667 ORTHO05D008387 2.7e-87 326.6 405 76.5
ClCG02G014160 Citrullus lanatus HOM05D006667 ORTHO05D008387 7.7e-87 325.1 408 73.5
SalBow2G2931 Salvia bowleyana HOM05D006667 ORTHO05D008387 2.3e-86 323.6 394 77.2
EL10Ac9g22983 Beta vulgaris HOM05D006667 ORTHO05D008387 2.9e-86 323.2 406 74.6
MBI06_g27487_MAGBIO Magnolia biondii HOM05D006667 ORTHO05D008387 2.9e-86 323.2 399 74.7
Nitab4.5_0004979g0060 Nicotiana tabacum HOM05D006667 ORTHO05D008387 5.0e-86 322.4 399 75.4
MSTRG.8092 Avicennia marina HOM05D006667 ORTHO05D008387 1.1e-85 321.2 403 79.2
DCAR_002607 Daucus carota HOM05D006667 ORTHO05D008387 1.9e-85 320.5 405 71.6
Sed0022119 Sechium edule HOM05D006667 ORTHO05D008387 2.5e-85 320.1 407 73.5
Thecc.02G154400 Theobroma cacao HOM05D006667 ORTHO05D008387 4.2e-85 319.3 406 75.6
Glyma.10G286600 Glycine max HOM05D006667 ORTHO05D008387 1.2e-84 317.8 407 71.3
Hund24389 Selenicereus undatus HOM05D006667 ORTHO05D008387 1.2e-84 317.8 408 74.3
CANSAT78G2402 Cannabis sativa HOM05D006667 ORTHO05D008387 1.6e-84 317.4 406 72.2
Atru.chr11.1242 Acer truncatum HOM05D006667 ORTHO05D008387 2.8e-84 316.6 395 78.0
Ciclev10033734m.g Citrus clementina HOM05D006667 ORTHO05D008387 8.0e-84 315.1 407 71.0
TPR.G4129 Trifolium pratense HOM05D006667 ORTHO05D008387 5.2e-83 312.4 407 72.0
Solyc04g008980.3 Solanum lycopersicum HOM05D006667 ORTHO05D008387 3.4e-82 309.7 404 73.0
Carub.0006s2112 Capsella rubella HOM05D006667 ORTHO05D008387 5.7e-82 308.9 406 73.6
Nitab4.5_0005997g0030 Nicotiana tabacum HOM05D006667 ORTHO05D008387 9.8e-82 308.1 399 73.7
Sopen04g004160 Solanum pennellii HOM05D006667 ORTHO05D008387 1.3e-81 307.8 404 73.0
TWI74G1436 Tripterygium wilfordii HOM05D006667 ORTHO05D008387 2.8e-81 306.6 406 72.9
Glyma.20G102500 Glycine max HOM05D006667 ORTHO05D008387 2.4e-80 303.5 407 72.7
Sc10g0006700 Simmondsia chinensis HOM05D006667 ORTHO05D008387 7.0e-80 302.0 396 71.2
vmacro15997 Vaccinium macrocarpon HOM05D006667 ORTHO05D008387 4.5e-79 299.3 537 55.5
BcaB07g29860 Brassica carinata HOM05D006667 ORTHO05D008387 2.3e-78 297.0 407 73.7
Cfa008778 Carpinus fangiana HOM05D006667 ORTHO05D008387 2.3e-78 297.0 415 67.0
CAN.G274.16 Capsicum annuum HOM05D006667 ORTHO05D008387 3.3e-77 293.1 394 72.6
PGR142G2507 Punica granatum HOM05D006667 ORTHO05D008387 8.0e-76 288.5 396 71.7
AUR62032948 Chenopodium quinoa HOM05D006667 ORTHO05D008387 2.3e-75 287.0 408 68.9
SGA_v2.0_scaffold80G25957 Striga asiatica HOM05D006667 ORTHO05D008387 6.8e-75 285.4 402 72.9
unitig_749.g13342 Utricularia gibba HOM05D006667 ORTHO05D008387 6.8e-75 285.4 395 67.8
CDE04G2906 Ceratophyllum demersum HOM05D006667 ORTHO05D008387 1.5e-74 284.3 400 74.8
Ca_11261_v3 Cicer arietinum L. HOM05D006667 ORTHO05D008387 1.7e-73 280.8 408 68.1
Hma1.2p1_0044F.1_g026310 Hydrangea macrophylla HOM05D006667 ORTHO05D008387 1.4e-72 277.7 426 47.7
Ah.03g147880 Amaranthus hybridus HOM05D006667 ORTHO05D008387 5.4e-72 275.8 424 61.8
Zm00001eb185570 Zea mays HOM05D006667 ORTHO05D008387 7.8e-71 271.9 395 61.5
PSO017G3027 Papaver somniferum HOM05D006667 ORTHO05D008387 2.5e-69 266.9 403 73.7
COL.COLO4_33111 Corchorus olitorius HOM05D006667 ORTHO05D008387 4.1e-64 249.6 404 69.1
Haze_11790 Corylus avellana HOM05D006667 ORTHO05D008387 2.7e-63 246.9 410 65.9
Eucgr.G02589 Eucalyptus grandis HOM05D006667 ORTHO05D008387 1.7e-62 244.2 396 67.4
ECA246G5028 Erigeron canadensis HOM05D002605 ORTHO05D002842 6.6e-62 242.3 397 69.8
Oeu027930.1 Olea europaea HOM05D006667 ORTHO05D008387 5.2e-59 232.6 395 71.4
Lsat_1_v5_gn_3_34481 Lactuca sativa HOM05D006667 ORTHO05D008387 1.5e-58 231.1 396 69.2
HanXRQChr17g0541041 Helianthus annuus HOM05D006667 ORTHO05D008387 5.8e-58 229.2 398 69.1
AUR62017733 Chenopodium quinoa HOM05D006667 ORTHO05D008387 1.5e-53 214.5 412 54.1
TWI53G1716 Tripterygium wilfordii HOM05D006667 ORTHO05D008387 1.9e-53 214.2 404 65.6
PSO170G5099 Papaver somniferum HOM05D006667 ORTHO05D008387 6.4e-49 199.1 403 67.7
HanXRQChr06g0171711 Helianthus annuus HOM05D006667 ORTHO05D008387 2.3e-46 190.7 393 64.1
SEGI_01489 Sequoiadendron giganteum HOM05D006667 ORTHO05D008387 1.1e-45 188.3 401 63.8
Gohir.A12G132300 Gossypium hirsutum HOM05D006667 ORTHO05D008387 2.1e-44 184.1 186 58.6
Nn3g18579 Nelumbo nucifera HOM05D006667 ORTHO05D008387 1.1e-43 181.8 396 66.9
Phvul.007G014200 Phaseolus vulgaris HOM05D006667 ORTHO05D008387 2.4e-40 170.6 188 52.1
Os02g0636400 Oryza sativa ssp. japonica HOM05D006667 ORTHO05D008387 9.3e-40 168.7 176 51.7
ATR0618G066 Amborella trichopoda HOM05D006667 ORTHO05D008387 3.0e-38 163.7 396 63.4
arahy.Tifrunner.gnm1.ann1.6XP1A8 Arachis hypogaea HOM05D006667 ORTHO05D008387 3.0e-38 163.7 108 71.3
arahy.Tifrunner.gnm1.ann1.RI7T4X Arachis hypogaea HOM05D006667 ORTHO05D008387 3.0e-38 163.7 108 71.3
Ca_11262_v3 Cicer arietinum L. HOM05D006667 ORTHO05D008387 1.6e-36 157.9 184 47.3
arahy.Tifrunner.gnm1.ann1.ALJ85P Arachis hypogaea HOM05D006667 ORTHO05D008387 3.1e-35 153.7 96 77.1
Dinv17648 Davidia involucrata HOM05D006667 ORTHO05D008387 5.8e-34 149.4 113 64.6
HPP92_025485 Vanilla planifolia HOM05D006667 ORTHO05D008387 1.9e-32 144.4 108 64.8
arahy.Tifrunner.gnm1.ann1.L6WSTP Arachis hypogaea HOM05D006667 ORTHO05D008387 3.2e-32 143.7 92 75.0
SMO116G0353 Selaginella moellendorffii HOM05D006667 ORTHO05D008387 3.9e-30 136.7 391 60.4
Potri.007G075600 Populus trichocarpa HOM05D006667 ORTHO05D008387 7.4e-29 132.5 400 39.0
Medtr7g010500 Medicago truncatula HOM05D006667 ORTHO05D008387 6.2e-20 102.8 70 67.1
PRCOL_00005880 Prasinoderma coloniale HOM05D007176 ORTHO05D009050 4.2e-08 63.5 101 32.7
ClCG10G022490 Citrullus lanatus HOM05D002125 ORTHO05D002105 3.6e-07 60.5 88 35.2
Sopen08g020490 Solanum pennellii HOM05D002813 ORTHO05D003203 6.1e-07 59.7 93 35.5
SGA_v2.0_scaffold85G26673 Striga asiatica HOM05D002125 ORTHO05D002105 6.1e-07 59.7 85 34.1
Haze_04113 Corylus avellana HOM05D002125 ORTHO05D002105 7.9e-07 59.3 128 28.9
HanXRQChr16g0511061 Helianthus annuus HOM05D002125 ORTHO05D002105 7.9e-07 59.3 85 34.1
MBI04_g25313_MAGBIO Magnolia biondii HOM05D001818 ORTHO05D001780 1.0e-06 58.9 127 29.9
PGSC0003DMG400002228 Solanum tuberosum HOM05D002813 ORTHO05D003203 1.8e-06 58.2 93 34.4
unitig_26.g8959 Utricularia gibba HOM05D002125 ORTHO05D002105 1.8e-06 58.2 85 31.8
Actinidia11543 Actinidia chinensis HOM05D002125 ORTHO05D002105 2.3e-06 57.8 126 25.4
Nitab4.5_0000355g0180 Nicotiana tabacum HOM05D002125 ORTHO05D002105 2.3e-06 57.8 85 31.8
Hund19853 Selenicereus undatus HOM05D002125 ORTHO05D002105 2.3e-06 57.8 87 29.9
CAN.G955.3 Capsicum annuum HOM05D002125 ORTHO05D002105 3.0e-06 57.4 85 29.4
Pp3c10_8230 Physcomitrium patens HOM05D006667 ORTHO05D008387 3.9e-06 57.0 58 51.7
Aa31LG1G15450 Aethionema arabicum HOM05D001818 ORTHO05D001780 5.1e-06 56.6 119 28.6
Sc20g0006750 Simmondsia chinensis HOM05D002125 ORTHO05D002105 5.1e-06 56.6 87 32.2
Actinidia23131 Actinidia chinensis HOM05D005998 ORTHO05D007664 6.7e-06 56.2 136 30.9
Cfa006657 Carpinus fangiana HOM05D002125 ORTHO05D002105 6.7e-06 56.2 129 28.7
Nitab4.5_0003850g0070 Nicotiana tabacum HOM05D002125 ORTHO05D002105 8.8e-06 55.8 85 30.6


User provided reference genes

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