Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc60.2 Carica papaya HOM05D007297 ORTHO05D009352 5.6e-175 617.5 302 100.0
COL.COLO4_33139 Corchorus olitorius HOM05D007297 ORTHO05D009352 2.0e-95 353.2 230 71.3
Potri.004G207400 Populus trichocarpa HOM05D007297 ORTHO05D009352 5.7e-95 351.7 220 73.6
QL11p056524 Quercus lobata HOM05D007297 ORTHO05D009352 5.7e-95 351.7 278 62.6
Gorai.002G014500 Gossypium raimondii HOM05D007297 ORTHO05D009352 2.2e-94 349.7 291 62.2
Gohir.D01G012700 Gossypium hirsutum HOM05D007297 ORTHO05D009352 3.7e-94 349.0 291 62.2
Thecc.02G146900 Theobroma cacao HOM05D007297 ORTHO05D009352 3.7e-94 349.0 235 69.8
Prupe.8G180900 Prunus persica HOM05D007297 ORTHO05D009352 6.3e-94 348.2 255 66.7
Duzib132G0252 Durio zibethinus HOM05D007297 ORTHO05D009352 1.2e-92 344.0 230 70.9
CiPaw.05G093700 Carya illinoinensis HOM05D007297 ORTHO05D009352 2.0e-92 343.2 260 65.4
Gohir.A01G011500 Gossypium hirsutum HOM05D007297 ORTHO05D009352 2.7e-92 342.8 291 61.5
Sed0028195 Sechium edule HOM05D007297 ORTHO05D009352 2.9e-91 339.3 257 62.3
CANSAT25G3874 Cannabis sativa HOM05D007297 ORTHO05D009352 6.5e-91 338.2 218 68.8
Ciclev10028691m.g Citrus clementina HOM05D007297 ORTHO05D009352 1.5e-90 337.0 271 61.6
MELO3C015706.2 Cucumis melo HOM05D007297 ORTHO05D009352 1.9e-90 336.7 238 65.5
ClCG02G003330 Citrullus lanatus HOM05D007297 ORTHO05D009352 2.5e-90 336.3 263 60.8
GSVIVG01023865001 Vitis vinifera HOM05D007297 ORTHO05D009352 3.2e-90 335.9 268 60.1
CsaV3_7G002000 Cucumis sativus L. HOM05D007297 ORTHO05D009352 2.1e-89 333.2 239 65.7
Dinv14179 Davidia involucrata HOM05D007297 ORTHO05D009352 2.1e-89 333.2 225 69.3
TWI79G0145 Tripterygium wilfordii HOM05D007297 ORTHO05D009352 4.7e-89 332.0 234 66.2
RcHm_v2.0_Chr6g0281021 Rosa chinensis HOM05D007297 ORTHO05D009352 8.0e-89 331.3 224 67.4
Cfa010687 Carpinus fangiana HOM05D007297 ORTHO05D009352 1.8e-88 330.1 261 64.0
Rhsim05G0044900 Rhododendron simsii HOM05D007297 ORTHO05D009352 5.2e-88 328.6 313 53.7
FvH4_2g16900 Fragaria vesca HOM05D007297 ORTHO05D009352 1.5e-87 327.0 242 62.8
FAN27G2312 Fragaria x ananassa HOM05D007297 ORTHO05D009352 1.5e-87 327.0 219 67.1
FAN15G2550 Fragaria x ananassa HOM05D007297 ORTHO05D009352 2.6e-87 326.2 219 67.1
Manes.15G114700 Manihot esculenta HOM05D007297 ORTHO05D009352 4.4e-87 325.5 279 57.3
CSS0008013 Camellia sinensis var. sinensis HOM05D007297 ORTHO05D009352 7.5e-87 324.7 213 70.9
MD10G1142400 Malus domestica HOM05D007297 ORTHO05D009352 9.8e-87 324.3 260 60.0
arahy.Tifrunner.gnm1.ann1.114EL0 Arachis hypogaea HOM05D007297 ORTHO05D009352 4.9e-86 322.0 239 65.3
Nn5g31034 Nelumbo nucifera HOM05D007297 ORTHO05D009352 1.4e-85 320.5 276 56.2
TAR381G0094 Trochodendron aralioides HOM05D007297 ORTHO05D009352 1.4e-85 320.5 251 58.6
MD05G1140800 Malus domestica HOM05D007297 ORTHO05D009352 3.1e-85 319.3 213 68.1
HanXRQChr16g0515151 Helianthus annuus HOM05D007297 ORTHO05D009352 1.6e-84 317.0 257 56.4
ECA233G4247 Erigeron canadensis HOM05D007297 ORTHO05D009352 2.0e-84 316.6 255 58.8
MBI05_g18176_MAGBIO Magnolia biondii HOM05D007297 ORTHO05D009352 2.7e-84 316.2 240 61.2
Aqoxy5G00964 Aquilegia oxysepala HOM05D007297 ORTHO05D009352 1.0e-83 314.3 249 57.4
Eucgr.H04994 Eucalyptus grandis HOM05D007297 ORTHO05D009352 1.0e-83 314.3 214 66.4
vmacro23445 Vaccinium macrocarpon HOM05D007297 ORTHO05D009352 1.7e-83 313.5 211 67.8
Oeu032716.1 Olea europaea HOM05D007297 ORTHO05D009352 2.9e-83 312.8 210 68.1
Lj5g0024553 Lotus japonicus HOM05D007297 ORTHO05D009352 3.8e-83 312.4 214 66.8
PGR042G0917 Punica granatum HOM05D007297 ORTHO05D009352 5.0e-83 312.0 272 54.8
THA.LOC104804081 Tarenaya hassleriana HOM05D007297 ORTHO05D009352 8.6e-83 311.2 252 62.7
DCAR_006267 Daucus carota HOM05D007297 ORTHO05D009352 2.5e-82 309.7 212 66.5
EL10Ac9g21544 Beta vulgaris HOM05D007297 ORTHO05D009352 5.6e-82 308.5 301 51.8
Glyma.10G244200 Glycine max HOM05D007297 ORTHO05D009352 1.2e-81 307.4 244 60.2
CDE05G3233 Ceratophyllum demersum HOM05D007297 ORTHO05D009352 1.4e-80 303.9 269 52.0
PSO170G5512 Papaver somniferum HOM05D007297 ORTHO05D009352 1.4e-80 303.9 236 58.5
Thhalv10025549m.g Eutrema salsugineum HOM05D007297 ORTHO05D009352 3.0e-80 302.8 259 57.9
AUR62010181 Chenopodium quinoa HOM05D007297 ORTHO05D009352 5.2e-80 302.0 230 60.9
Lsat_1_v5_gn_8_120880 Lactuca sativa HOM05D007297 ORTHO05D009352 6.8e-80 301.6 260 55.8
AUR62013182 Chenopodium quinoa HOM05D007297 ORTHO05D009352 1.5e-79 300.4 230 60.4
AL7G10130 Arabidopsis lyrata HOM05D002051 ORTHO05D002041 2.0e-79 300.1 274 55.8
Sp7g37510 Schrenkiella parvula HOM05D007297 ORTHO05D009352 2.0e-79 300.1 233 61.8
Hund06358 Selenicereus undatus HOM05D007297 ORTHO05D009352 4.4e-79 298.9 224 60.3
Ca_10853_v3 Cicer arietinum L. HOM05D007297 ORTHO05D009352 5.7e-79 298.5 209 66.5
Phvul.007G061600 Phaseolus vulgaris HOM05D007297 ORTHO05D009352 9.8e-79 297.7 214 65.0
Psat6g204280 Pisum sativum HOM05D007297 ORTHO05D009352 1.3e-78 297.4 225 60.9
Sc18g0005810 Simmondsia chinensis HOM05D007297 ORTHO05D009352 1.3e-78 297.4 213 64.3
VMungo0720G0116 Vigna mungo HOM05D007297 ORTHO05D009352 1.3e-78 297.4 242 59.1
arahy.Tifrunner.gnm1.ann1.F5MDAV Arachis hypogaea HOM05D007297 ORTHO05D009352 3.7e-78 295.8 198 70.2
Medtr1g102880 Medicago truncatula HOM05D007297 ORTHO05D009352 3.7e-78 295.8 225 61.8
Nitab4.5_0001700g0150 Nicotiana tabacum HOM05D007297 ORTHO05D009352 3.7e-78 295.8 284 54.6
Carub.0007s0016 Capsella rubella HOM05D007297 ORTHO05D009352 4.1e-77 292.4 213 64.8
Cc09_g10870 Coffea canephora HOM05D007297 ORTHO05D009352 5.4e-77 292.0 253 57.7
Migut.N01363 Erythranthe guttata HOM05D007297 ORTHO05D009352 7.0e-77 291.6 236 59.7
AT4G38225 Arabidopsis thaliana HOM05D007297 ORTHO05D009352 3.5e-76 289.3 242 59.5
Peaxi162Scf00374g00734 Petunia axillaris HOM05D007297 ORTHO05D009352 1.0e-75 287.7 216 63.9
Solyc10g074580.2 Solanum lycopersicum HOM05D007297 ORTHO05D009352 1.7e-75 287.0 216 63.9
PGSC0003DMG400016829 Solanum tuberosum HOM05D007297 ORTHO05D009352 1.7e-75 287.0 290 52.4
Sopen10g027070 Solanum pennellii HOM05D007297 ORTHO05D009352 2.3e-75 286.6 216 63.9
ATR0807G066 Amborella trichopoda HOM05D007297 ORTHO05D009352 1.1e-74 284.3 247 57.9
CARHR294010 Cardamine hirsuta HOM05D007297 ORTHO05D009352 1.1e-74 284.3 235 60.4
MD05G1140400 Malus domestica HOM05D007297 ORTHO05D009352 1.1e-74 284.3 213 62.4
MSTRG.27611 Avicennia marina HOM05D007297 ORTHO05D009352 3.6e-73 279.3 231 58.9
A06p06480 Brassica napus HOM05D007027 ORTHO05D008765 4.7e-73 278.9 257 55.3
Ah.01g017630 Amaranthus hybridus HOM05D007297 ORTHO05D009352 2.3e-72 276.6 194 66.0
BraA06t23859Z Brassica rapa HOM05D007027 ORTHO05D008765 3.1e-72 276.2 256 54.3
SalBow5G0092 Salvia bowleyana HOM05D007297 ORTHO05D009352 3.1e-72 276.2 236 59.3
SalBow5G1065 Salvia bowleyana HOM05D007297 ORTHO05D009352 6.8e-72 275.0 236 59.3
C05p07890 Brassica napus HOM05D007027 ORTHO05D008765 7.5e-71 271.6 215 61.9
BolC5t29540H Brassica oleracea HOM05D007027 ORTHO05D008765 7.5e-71 271.6 215 61.9
unitig_26.g9984 Utricularia gibba HOM05D007297 ORTHO05D009352 3.7e-70 269.2 224 58.5
Aa31LG6G16890 Aethionema arabicum HOM05D007297 ORTHO05D009352 2.4e-69 266.5 199 65.8
SGA_v2.0_scaffold98G29306 Striga asiatica HOM05D007297 ORTHO05D009352 1.1e-64 251.1 260 50.8
HPP92_012647 Vanilla planifolia HOM05D007297 ORTHO05D009352 3.1e-64 249.6 262 46.6
Lj9A408T85 Lonicera japonica HOM05D007297 ORTHO05D009352 2.2e-62 243.4 169 66.9
Os03g0128800 Oryza sativa ssp. japonica HOM05D007297 ORTHO05D009352 9.2e-61 238.0 227 51.1
CSS0007337 Camellia sinensis var. sinensis HOM05D007297 ORTHO05D009352 1.6e-60 237.3 182 63.2
Actinidia32005 Actinidia chinensis HOM05D007297 ORTHO05D009352 3.5e-60 236.1 216 56.9
Zm00001eb002190 Zea mays HOM05D007297 ORTHO05D009352 2.6e-55 219.9 239 46.4
Cpa.g.sc2396.1 Carica papaya HOM05D007297 ORTHO05D009352 6.6e-51 205.3 102 100.0
AagrBONN_evm.TU.Sc2ySwM_117.3353 Anthoceros agrestis HOM05D007297 ORTHO05D009352 1.4e-45 187.6 225 44.0
Mapoly0005s0259 Marchantia polymorpha HOM05D007297 ORTHO05D009352 5.4e-45 185.7 218 41.7
CBR_g49409 Chara braunii HOM05D001007 ORTHO05D008005 2.3e-43 180.3 231 43.7
Pp3c17_19510 Physcomitrium patens HOM05D007297 ORTHO05D009352 7.3e-42 175.3 213 42.7
AL7G47220 Arabidopsis lyrata HOM05D007297 ORTHO05D009352 1.4e-40 171.0 174 54.0
Atru.chr5.3567 Acer truncatum HOM05D007297 ORTHO05D009352 3.1e-40 169.9 116 67.2
Hma1.2p1_1276F.1_g272150 Hydrangea macrophylla HOM05D007297 ORTHO05D009352 3.9e-35 152.9 139 54.0
Hma1.2p1_1819F.1_g304100 Hydrangea macrophylla HOM05D007297 ORTHO05D009352 4.8e-33 146.0 128 54.7
SMO356G0187 Selaginella moellendorffii HOM05D007297 ORTHO05D009352 6.2e-33 145.6 215 35.8
Pp3c2_4700 Physcomitrium patens HOM05D007297 ORTHO05D009352 1.4e-32 144.4 196 39.3
MD11G1100600 Malus domestica HOM05D007297 ORTHO05D009352 3.4e-31 139.8 90 70.0
Hma1.2p1_0271F.1_g108750 Hydrangea macrophylla HOM05D007297 ORTHO05D009352 9.6e-26 121.7 91 60.4
Hma1.2p1_0422F.1_g150110 Hydrangea macrophylla HOM05D007297 ORTHO05D009352 2.8e-25 120.2 134 47.0
Hma1.2p1_0367F.1_g137160 Hydrangea macrophylla HOM05D007297 ORTHO05D009352 4.0e-24 116.3 95 54.7
Cre12.g554600 Chlamydomonas reinhardtii HOM05D007297 ORTHO05D009352 7.1e-21 105.5 218 30.7
MCO13G078 Micromonas commoda HOM05D007297 ORTHO05D009352 2.2e-14 84.0 182 30.8


User provided reference genes

Program Settings