Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc6.412 Carica papaya HOM05D006624 ORTHO05D008209 1.4e-159 566.2 280 100.0
CiPaw.11G087800 Carya illinoinensis HOM05D006624 ORTHO05D008209 3.3e-89 332.4 251 63.7
Dinv25186 Davidia involucrata HOM05D006624 ORTHO05D008209 1.8e-87 326.6 250 64.0
QL12p007008 Quercus lobata HOM05D006624 ORTHO05D008209 1.8e-87 326.6 250 62.4
Ciclev10031769m.g Citrus clementina HOM05D006624 ORTHO05D008209 2.0e-86 323.2 251 62.9
TWI15G0738 Tripterygium wilfordii HOM05D006624 ORTHO05D008209 2.3e-82 309.7 244 61.9
Haze_08295 Corylus avellana HOM05D006624 ORTHO05D008209 4.4e-81 305.4 260 58.1
Actinidia10881 Actinidia chinensis HOM05D006624 ORTHO05D008209 3.7e-80 302.4 245 61.2
CSS0000809 Camellia sinensis var. sinensis HOM05D006624 ORTHO05D008209 1.1e-79 300.8 242 61.6
CSS0049781 Camellia sinensis var. sinensis HOM05D006624 ORTHO05D008209 1.4e-79 300.4 242 61.6
Potri.001G146500 Populus trichocarpa HOM05D006624 ORTHO05D008209 1.8e-79 300.1 243 60.5
Rhsim07G0122500 Rhododendron simsii HOM05D006624 ORTHO05D008209 5.3e-79 298.5 235 61.3
MD06G1040000 Malus domestica HOM05D006624 ORTHO05D008209 9.1e-79 297.7 244 59.4
Glyma.11G041200 Glycine max HOM05D006624 ORTHO05D008209 4.5e-78 295.4 244 58.2
TPR.G21431 Trifolium pratense HOM05D006624 ORTHO05D008209 4.5e-78 295.4 242 57.9
Manes.17G019300 Manihot esculenta HOM05D006624 ORTHO05D008209 7.7e-78 294.7 245 60.4
Prupe.5G046100 Prunus persica HOM05D006624 ORTHO05D008209 7.7e-78 294.7 256 57.8
TAR629G2579 Trochodendron aralioides HOM05D006624 ORTHO05D008209 7.7e-78 294.7 243 62.1
Actinidia31470 Actinidia chinensis HOM05D006624 ORTHO05D008209 5.0e-77 292.0 245 59.6
COL.COLO4_17108 Corchorus olitorius HOM05D000087 ORTHO05D008209 1.5e-76 290.4 252 59.1
Glyma.01G200900 Glycine max HOM05D006624 ORTHO05D008209 1.5e-76 290.4 244 55.7
Gorai.003G180000 Gossypium raimondii HOM05D006624 ORTHO05D008209 1.5e-76 290.4 249 57.0
Lj2g0021367 Lotus japonicus HOM05D006624 ORTHO05D008209 4.2e-76 288.9 240 59.6
Gohir.D03G169701 Gossypium hirsutum HOM05D006624 ORTHO05D008209 5.5e-76 288.5 249 56.6
Duzib068G0530 Durio zibethinus HOM05D006624 ORTHO05D008209 7.2e-76 288.1 241 59.8
GSVIVG01013232001 Vitis vinifera HOM05D006624 ORTHO05D008209 7.2e-76 288.1 242 58.3
Phvul.002G004700 Phaseolus vulgaris HOM05D006624 ORTHO05D008209 9.4e-76 287.7 244 55.7
Psat2g174640 Pisum sativum HOM05D006624 ORTHO05D008209 1.2e-75 287.3 242 57.0
Sabra01G0115200 Salix brachista HOM05D006624 ORTHO05D008209 1.2e-75 287.3 243 58.4
THA.LOC104827742 Tarenaya hassleriana HOM05D006624 ORTHO05D008209 6.1e-75 285.0 227 59.9
RcHm_v2.0_Chr7g0208351 Rosa chinensis HOM05D006624 ORTHO05D008209 8.0e-75 284.6 243 56.8
Medtr5g014010 Medicago truncatula HOM05D006624 ORTHO05D008209 1.8e-74 283.5 242 55.8
Gohir.A03G002600 Gossypium hirsutum HOM05D006624 ORTHO05D008209 5.2e-74 282.0 261 54.8
FAN04G0639 Fragaria x ananassa HOM05D006624 ORTHO05D008209 1.1e-73 280.8 238 56.3
VMungo1215G2954 Vigna mungo HOM05D006624 ORTHO05D008209 4.4e-73 278.9 244 54.9
FAN08G0242 Fragaria x ananassa HOM05D006624 ORTHO05D008209 5.7e-73 278.5 243 55.1
FvH4_5g21210 Fragaria vesca HOM05D006624 ORTHO05D008209 9.7e-73 277.7 244 54.9
QL12p007057 Quercus lobata HOM05D006624 ORTHO05D008209 1.3e-72 277.3 269 54.3
PGR042G3682 Punica granatum HOM05D006624 ORTHO05D008209 4.8e-72 275.4 242 56.6
Atru.chr6.1770 Acer truncatum HOM05D006624 ORTHO05D008209 1.4e-71 273.9 257 57.2
Eucgr.E00310 Eucalyptus grandis HOM05D006624 ORTHO05D008209 1.8e-71 273.5 244 57.4
Lalb_Chr16g0379211 Lupinus albus HOM05D006624 ORTHO05D008209 1.8e-71 273.5 242 55.4
C07p29750 Brassica napus HOM05D006624 ORTHO05D008209 2.0e-70 270.0 231 55.4
arahy.Tifrunner.gnm1.ann1.76B0S0 Arachis hypogaea HOM05D006624 ORTHO05D008209 2.6e-70 269.6 263 52.5
CsaV3_3G049520 Cucumis sativus L. HOM05D006624 ORTHO05D008209 3.5e-70 269.2 234 55.6
arahy.Tifrunner.gnm1.ann1.A7V6P3 Arachis hypogaea HOM05D006624 ORTHO05D008209 4.5e-70 268.9 260 53.1
ECA233G2124 Erigeron canadensis HOM05D006624 ORTHO05D008209 5.9e-70 268.5 244 56.1
BcaC06g31468 Brassica carinata HOM05D006624 ORTHO05D008209 1.0e-69 267.7 229 55.5
Lj2A246G27 Lonicera japonica HOM05D006624 ORTHO05D008209 1.0e-69 267.7 290 47.9
Sed0020690 Sechium edule HOM05D006624 ORTHO05D008209 5.0e-69 265.4 243 53.1
BcaC06g34373 Brassica carinata HOM05D006624 ORTHO05D008209 6.5e-69 265.0 239 53.1
A06p45890 Brassica napus HOM05D006624 ORTHO05D008209 6.5e-69 265.0 239 53.1
BraA06t27456Z Brassica rapa HOM05D006624 ORTHO05D008209 8.5e-69 264.6 239 53.1
Nitab4.5_0004327g0020 Nicotiana tabacum HOM05D006624 ORTHO05D008209 1.5e-68 263.8 245 51.0
BolC7t43526H Brassica oleracea HOM05D006624 ORTHO05D008209 2.5e-68 263.1 239 53.1
Aqoxy7G00644 Aquilegia oxysepala HOM05D006624 ORTHO05D008209 5.5e-68 261.9 242 53.7
Cc08_g02070 Coffea canephora HOM05D006624 ORTHO05D008209 5.5e-68 261.9 245 53.9
ClCG09G012360 Citrullus lanatus HOM05D006624 ORTHO05D008209 7.2e-68 261.5 240 52.5
Nitab4.5_0002055g0180 Nicotiana tabacum HOM05D006624 ORTHO05D008209 7.2e-68 261.5 245 50.6
HanXRQChr08g0227961 Helianthus annuus HOM05D006624 ORTHO05D008209 1.2e-67 260.8 245 52.7
Aa31LG9G6360 Aethionema arabicum HOM05D006624 ORTHO05D008209 8.0e-67 258.1 231 54.5
CAN.G799.14 Capsicum annuum HOM05D006624 ORTHO05D008209 8.0e-67 258.1 247 49.8
Thecc.03G233800 Theobroma cacao HOM05D006624 ORTHO05D008209 8.0e-67 258.1 251 56.2
PGSC0003DMG400024215 Solanum tuberosum HOM05D006624 ORTHO05D008209 1.0e-66 257.7 245 50.2
MSTRG.12153 Avicennia marina HOM05D006624 ORTHO05D008209 1.4e-66 257.3 245 52.2
vmacro14109 Vaccinium macrocarpon HOM05D006624 ORTHO05D008209 1.4e-66 257.3 316 45.3
Migut.N01377 Erythranthe guttata HOM05D006624 ORTHO05D008209 1.8e-66 256.9 253 48.6
Solyc08g077250.4 Solanum lycopersicum HOM05D006624 ORTHO05D008209 3.0e-66 256.1 245 49.8
Sopen08g025830 Solanum pennellii HOM05D006624 ORTHO05D008209 2.0e-65 253.4 245 49.0
Ca_24634_v3 Cicer arietinum L. HOM05D006624 ORTHO05D008209 2.6e-65 253.1 185 64.9
PSO565G0001 Papaver somniferum HOM05D006624 ORTHO05D008209 3.7e-64 249.2 250 54.4
Sc01g0007740 Simmondsia chinensis HOM05D006624 ORTHO05D008209 6.3e-64 248.4 250 50.4
Hund14427 Selenicereus undatus HOM05D006624 ORTHO05D008209 1.1e-63 247.7 219 55.7
AL8G11790 Arabidopsis lyrata HOM05D006624 ORTHO05D008209 2.4e-63 246.5 242 50.8
MBI04_g31972_MAGBIO Magnolia biondii HOM05D006624 ORTHO05D008209 3.1e-63 246.1 290 46.2
PSO339G2002 Papaver somniferum HOM05D006624 ORTHO05D008209 3.1e-63 246.1 235 54.0
Ah.07g200030 Amaranthus hybridus HOM05D006624 ORTHO05D008209 1.6e-62 243.8 219 54.8
AT5G46560 Arabidopsis thaliana HOM05D006624 ORTHO05D008209 1.6e-62 243.8 235 50.6
SGA_v2.0_scaffold36G14316 Striga asiatica HOM05D006624 ORTHO05D008209 7.7e-62 241.5 226 50.4
FAN18G2886 Fragaria x ananassa HOM05D006624 ORTHO05D008209 7.2e-60 235.0 267 46.8
EL10Ac5g12192 Beta vulgaris HOM05D006624 ORTHO05D008209 2.1e-59 233.4 214 52.8
Carub.0008s0136 Capsella rubella HOM05D006624 ORTHO05D008209 2.7e-59 233.0 232 49.6
ATR1101G009 Amborella trichopoda HOM05D006624 ORTHO05D008209 1.8e-58 230.3 214 51.4
Lsat_1_v5_gn_6_68241 Lactuca sativa HOM05D006624 ORTHO05D008209 3.0e-58 229.6 219 53.4
Peaxi162Scf00084g00925 Petunia axillaris HOM05D006624 ORTHO05D008209 9.8e-57 224.6 199 54.8
DCAR_031785 Daucus carota HOM05D006624 ORTHO05D008209 2.2e-56 223.4 241 47.7
AUR62007233 Chenopodium quinoa HOM05D006624 ORTHO05D008209 3.7e-56 222.6 223 50.2
FAN13G3188 Fragaria x ananassa HOM05D006624 ORTHO05D008209 8.3e-56 221.5 193 57.0
MELO3C003374.2 Cucumis melo HOM05D006624 ORTHO05D008209 1.1e-55 221.1 234 48.7
AUR62018767 Chenopodium quinoa HOM05D006624 ORTHO05D008209 2.0e-54 216.9 206 51.5
CDE04G3153 Ceratophyllum demersum HOM05D006624 ORTHO05D008209 2.9e-48 196.4 207 45.9
SalBow6G4456 Salvia bowleyana HOM05D006624 ORTHO05D008209 3.7e-48 196.1 355 33.8
Thhalv10000965m.g Eutrema salsugineum HOM05D006624 ORTHO05D008209 7.0e-47 191.8 183 50.8
Zm00001eb000170 Zea mays HOM05D006624 ORTHO05D008209 1.6e-43 180.6 237 38.8
QL12p007029 Quercus lobata HOM05D006624 ORTHO05D008209 1.9e-39 167.2 137 54.0
Pp3c26_11390 Physcomitrium patens HOM05D006624 ORTHO05D008209 6.6e-37 158.7 221 40.7
Hma1.2p1_3049F.1_g332131 Hydrangea macrophylla HOM05D006624 ORTHO05D008209 3.3e-36 156.4 116 70.7
Mapoly0037s0054 Marchantia polymorpha HOM05D006624 ORTHO05D008209 7.3e-36 155.2 229 38.4
SEGI_35168 Sequoiadendron giganteum HOM05D006624 ORTHO05D008209 2.3e-34 150.2 190 42.1
Hma1.2p1_3049F.1_g332130 Hydrangea macrophylla HOM05D006624 ORTHO05D008209 5.1e-29 132.5 87 72.4
Gorai.001G276000 Gossypium raimondii HOM05D006624 ORTHO05D008209 1.5e-28 131.0 140 45.7
Duzib084G0908 Durio zibethinus HOM05D006624 ORTHO05D008209 3.3e-28 129.8 110 54.5
Gorai.004G193000 Gossypium raimondii HOM05D006624 ORTHO05D008209 1.4e-23 114.4 109 47.7
Gorai.013G102100 Gossypium raimondii HOM05D006624 ORTHO05D008209 5.1e-21 105.9 110 46.4
CBR_g18557 Chara braunii HOM05D006624 ORTHO05D008209 6.6e-21 105.5 180 33.3
SpUn0632_0010 Schrenkiella parvula HOM05D006624 ORTHO05D008209 8.6e-21 105.1 182 38.5
CARHR175020 Cardamine hirsuta HOM05D006624 ORTHO05D008209 2.8e-19 100.1 107 44.9
Gorai.001G079600 Gossypium raimondii HOM05D006624 ORTHO05D008209 9.9e-17 91.7 85 47.1
Gohir.D11G288800 Gossypium hirsutum HOM05D000724 ORTHO05D011687 4.9e-16 89.4 93 41.9
Gorai.004G213700 Gossypium raimondii HOM05D006624 ORTHO05D008209 4.9e-16 89.4 89 44.9
Gohir.D08G202450 Gossypium hirsutum HOM05D006624 ORTHO05D008209 5.1e-13 79.3 72 48.6
Gohir.D07G137300 Gossypium hirsutum HOM05D006624 ORTHO05D008209 3.3e-12 76.6 68 47.1
Gorai.007G312600 Gossypium raimondii HOM05D000724 ORTHO05D011687 3.1e-10 70.1 119 32.8
AagrBONN_evm.TU.Sc2ySwM_362.2673 Anthoceros agrestis HOM05D006624 ORTHO05D008209 3.8e-08 63.2 105 32.4
CBR_g30426 Chara braunii HOM05D006624 ORTHO05D008209 6.0e-06 55.8 61 41.0


User provided reference genes

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