Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc6.320 Carica papaya HOM05D002183 ORTHO05D002169 1.0e-157 560.1 284 100.0
Thecc.01G010700 Theobroma cacao HOM05D002183 ORTHO05D002169 2.9e-80 302.8 330 53.6
Hma1.2p1_0552F.1_g177710 Hydrangea macrophylla HOM05D002183 ORTHO05D002169 1.1e-79 300.8 309 52.8
CSS0002031 Camellia sinensis var. sinensis HOM05D002183 ORTHO05D002169 1.5e-76 290.4 334 51.5
Ciclev10026059m.g Citrus clementina HOM05D002183 ORTHO05D002169 1.9e-71 273.5 333 48.3
Gohir.A02G174900 Gossypium hirsutum HOM05D002183 ORTHO05D002169 4.1e-71 272.3 331 49.8
Prupe.7G175700 Prunus persica HOM05D002183 ORTHO05D002169 7.8e-70 268.1 297 51.2
Dinv08544 Davidia involucrata HOM05D002183 ORTHO05D002169 3.0e-69 266.2 267 52.4
Manes.02G110900 Manihot esculenta HOM05D002183 ORTHO05D002169 5.1e-69 265.4 339 46.9
Actinidia22934 Actinidia chinensis HOM05D002183 ORTHO05D002169 2.5e-68 263.1 330 46.4
MD02G1122800 Malus domestica HOM05D002183 ORTHO05D002169 2.5e-68 263.1 298 50.3
Gohir.A11G171600 Gossypium hirsutum HOM05D002183 ORTHO05D002169 1.2e-67 260.8 324 48.1
Potri.005G105900 Populus trichocarpa HOM05D002183 ORTHO05D002169 2.1e-67 260.0 345 48.1
MD15G1236800 Malus domestica HOM05D002183 ORTHO05D002169 4.7e-67 258.8 328 46.6
TAR628G0358 Trochodendron aralioides HOM05D002183 ORTHO05D002169 1.4e-66 257.3 327 46.8
Gohir.D03G004900 Gossypium hirsutum HOM05D002183 ORTHO05D002169 2.4e-66 256.5 313 49.8
Gorai.003G005200 Gossypium raimondii HOM05D002183 ORTHO05D002169 2.4e-66 256.5 313 49.8
Manes.01G151500 Manihot esculenta HOM05D002183 ORTHO05D002169 2.4e-66 256.5 335 43.9
Gorai.007G190300 Gossypium raimondii HOM05D002183 ORTHO05D002169 3.1e-66 256.1 327 48.9
Cfa007035 Carpinus fangiana HOM05D002183 ORTHO05D002169 4.0e-66 255.8 335 48.1
Dinv40150 Davidia involucrata HOM05D002183 ORTHO05D002169 1.2e-65 254.2 333 48.0
QL06p052261 Quercus lobata HOM05D002183 ORTHO05D002169 7.6e-65 251.5 341 44.9
Nn6g31888 Nelumbo nucifera HOM05D002183 ORTHO05D002169 1.6e-62 243.8 330 45.5
PGSC0003DMG400003593 Solanum tuberosum HOM05D002183 ORTHO05D002169 1.6e-62 243.8 324 43.8
FAN28G3018 Fragaria x ananassa HOM05D002183 ORTHO05D002169 4.6e-62 242.3 304 48.0
FAN19G1406 Fragaria x ananassa HOM05D002183 ORTHO05D002169 7.8e-62 241.5 304 46.1
Haze_03697 Corylus avellana HOM05D002183 ORTHO05D002169 1.0e-61 241.1 334 47.0
FAN26G0930 Fragaria x ananassa HOM05D002183 ORTHO05D002169 1.7e-61 240.4 304 45.7
Peaxi162Scf00328g00014 Petunia axillaris HOM05D002183 ORTHO05D002169 3.0e-61 239.6 332 44.3
Sabra05G0086600 Salix brachista HOM05D002183 ORTHO05D002169 5.1e-61 238.8 327 45.6
Nitab4.5_0007311g0030 Nicotiana tabacum HOM05D002183 ORTHO05D002169 6.6e-61 238.4 312 45.8
Cc07_g11390 Coffea canephora HOM05D002183 ORTHO05D002169 1.1e-60 237.7 266 48.9
Eucgr.I02297 Eucalyptus grandis HOM05D002183 ORTHO05D002169 1.5e-60 237.3 336 44.0
Solyc02g083310.3 Solanum lycopersicum HOM05D002183 ORTHO05D002169 1.5e-60 237.3 324 42.9
Sopen02g028100 Solanum pennellii HOM05D002183 ORTHO05D002169 1.5e-60 237.3 324 42.9
Lalb_Chr05g0212141 Lupinus albus HOM05D002183 ORTHO05D002169 1.9e-60 236.9 338 42.9
Gohir.D11G178500 Gossypium hirsutum HOM05D002183 ORTHO05D002169 3.3e-60 236.1 325 46.8
TWI53G0422 Tripterygium wilfordii HOM05D002183 ORTHO05D002169 5.6e-60 235.3 325 46.8
FAN23G0302 Fragaria x ananassa HOM05D002183 ORTHO05D002169 9.6e-60 234.6 304 47.0
Atru.chr3.915 Acer truncatum HOM05D002183 ORTHO05D002169 1.3e-59 234.2 327 46.2
PGR119G0261 Punica granatum HOM05D002183 ORTHO05D002169 1.3e-59 234.2 329 44.7
arahy.Tifrunner.gnm1.ann1.NV91S6 Arachis hypogaea HOM05D002183 ORTHO05D002169 2.8e-59 233.0 333 42.3
arahy.Tifrunner.gnm1.ann1.QU53NP Arachis hypogaea HOM05D002183 ORTHO05D002169 2.8e-59 233.0 333 42.3
GSVIVG01005413001 Vitis vinifera HOM05D002183 ORTHO05D002169 2.8e-59 233.0 236 53.4
RcHm_v2.0_Chr2g0098241 Rosa chinensis HOM05D002183 ORTHO05D002169 6.2e-59 231.9 309 45.3
ClCG10G000440 Citrullus lanatus HOM05D002183 ORTHO05D002169 3.1e-58 229.6 344 40.4
Sp2g30640 Schrenkiella parvula HOM05D002183 ORTHO05D002169 5.3e-58 228.8 313 44.4
MBI05_g32277_MAGBIO Magnolia biondii HOM05D002183 ORTHO05D002169 9.0e-58 228.0 332 44.3
CANSAT25G1446 Cannabis sativa HOM05D002183 ORTHO05D002169 1.2e-57 227.6 339 41.6
Aqoxy5G01092 Aquilegia oxysepala HOM05D005999 ORTHO05D002169 1.5e-57 227.3 281 47.7
Sc16g0001790 Simmondsia chinensis HOM05D005999 ORTHO05D003360 1.5e-57 227.3 257 48.6
THA.LOC104821346 Tarenaya hassleriana HOM05D002183 ORTHO05D002169 9.9e-57 224.6 295 45.4
VMungo1215G0472 Vigna mungo HOM05D002183 ORTHO05D002169 2.9e-56 223.0 331 39.6
TWI09G0419 Tripterygium wilfordii HOM05D002183 ORTHO05D002169 8.4e-56 221.5 314 44.3
Aa31LG1G14540 Aethionema arabicum HOM05D002183 ORTHO05D002169 1.4e-55 220.7 307 45.6
Nitab4.5_0001696g0030 Nicotiana tabacum HOM05D002183 ORTHO05D002169 1.9e-55 220.3 304 44.1
CsaV3_3G000470 Cucumis sativus L. HOM05D002183 ORTHO05D002169 2.4e-55 219.9 328 41.2
Thhalv10004534m.g Eutrema salsugineum HOM05D002183 ORTHO05D002169 7.1e-55 218.4 315 44.4
Ah.03g134260 Amaranthus hybridus HOM05D002183 ORTHO05D002169 1.6e-54 217.2 293 45.7
CAN.G890.23 Capsicum annuum HOM05D002183 ORTHO05D002169 2.7e-54 216.5 330 41.8
THA.LOC104826480 Tarenaya hassleriana HOM05D002183 ORTHO05D002169 4.6e-54 215.7 308 42.2
Lj2g0009962 Lotus japonicus HOM05D002183 ORTHO05D002169 1.0e-53 214.5 327 39.8
Glyma.11G082000 Glycine max HOM05D002183 ORTHO05D002169 1.3e-53 214.2 329 39.2
Rhsim10G0204600 Rhododendron simsii HOM05D002183 ORTHO05D002169 3.9e-53 212.6 394 37.3
C09p12090 Brassica napus HOM05D002183 ORTHO05D002169 6.6e-53 211.8 325 41.8
BolC9t54099H Brassica oleracea HOM05D002183 ORTHO05D002169 6.6e-53 211.8 325 41.8
AL8G45560 Arabidopsis lyrata HOM05D002183 ORTHO05D002169 8.7e-53 211.5 324 42.3
BcaC04g23107 Brassica carinata HOM05D002183 ORTHO05D002169 3.3e-52 209.5 303 43.6
AUR62026401 Chenopodium quinoa HOM05D002183 ORTHO05D002169 3.3e-52 209.5 288 46.5
Sed0023230 Sechium edule HOM05D002183 ORTHO05D002169 3.3e-52 209.5 309 40.8
BcaB04g20128 Brassica carinata HOM05D002183 ORTHO05D002169 7.4e-52 208.4 311 44.7
EL10Ac6g13338 Beta vulgaris HOM05D002183 ORTHO05D002169 1.3e-51 207.6 344 42.4
A09p10200 Brassica napus HOM05D002183 ORTHO05D002169 1.3e-51 207.6 316 42.1
BraA09t36665Z Brassica rapa HOM05D002183 ORTHO05D002169 1.3e-51 207.6 316 42.1
Psat0s877g0040 Pisum sativum HOM05D002183 ORTHO05D002169 1.3e-51 207.6 340 40.6
AT5G66050 Arabidopsis thaliana HOM05D002183 ORTHO05D002169 2.1e-51 206.8 326 42.3
Hund16624 Selenicereus undatus HOM05D002183 ORTHO05D002169 1.4e-50 204.1 297 46.1
Carub.0008s2846 Capsella rubella HOM05D002183 ORTHO05D002169 3.1e-50 203.0 277 46.2
vmacro20499 Vaccinium macrocarpon HOM05D002183 ORTHO05D002169 3.1e-50 203.0 223 50.2
Medtr5g023110 Medicago truncatula HOM05D002183 ORTHO05D002169 6.9e-50 201.8 318 39.3
TPR.G25132 Trifolium pratense HOM05D002183 ORTHO05D002169 6.9e-50 201.8 336 38.4
ATR0661G224 Amborella trichopoda HOM05D002183 ORTHO05D002169 4.5e-49 199.1 300 41.3
HPP92_022386 Vanilla planifolia HOM05D002183 ORTHO05D002169 5.8e-49 198.7 251 44.2
MELO3C013740.2 Cucumis melo HOM05D002183 ORTHO05D002169 1.7e-48 197.2 280 41.4
CiPaw.08G125400 Carya illinoinensis HOM05D002183 ORTHO05D002169 2.2e-48 196.8 221 49.3
HanXRQChr09g0257031 Helianthus annuus HOM05D002183 ORTHO05D002169 4.9e-48 195.7 330 40.6
PSO170G6420 Papaver somniferum HOM05D002183 ORTHO05D002169 3.2e-47 193.0 269 44.6
PSO210G3420 Papaver somniferum HOM05D002183 ORTHO05D002169 1.2e-46 191.0 267 44.2
Lsat_1_v5_gn_4_144000 Lactuca sativa HOM05D002183 ORTHO05D002169 2.1e-46 190.3 257 42.4
RhsimUnG0152600 Rhododendron simsii HOM05D002183 ORTHO05D002169 2.7e-46 189.9 215 48.8
AUR62026215 Chenopodium quinoa HOM05D002183 ORTHO05D002169 6.7e-45 185.3 313 41.2
ECA232G4480 Erigeron canadensis HOM05D002183 ORTHO05D002169 8.7e-45 184.9 249 42.6
Duzib147G0884 Durio zibethinus HOM05D005999 ORTHO05D003360 1.9e-44 183.7 244 48.8
Atru.chr3.920 Acer truncatum HOM05D002183 ORTHO05D002169 7.6e-41 171.8 207 51.2
Glyma.01G161700 Glycine max HOM05D002183 ORTHO05D002169 4.2e-39 166.0 230 40.4
FvH4_1g10980 Fragaria vesca HOM05D002183 ORTHO05D002169 3.9e-37 159.5 190 47.4
CDE02G0651 Ceratophyllum demersum HOM05D002183 ORTHO05D002169 1.8e-34 150.6 212 42.5
Phvul.002G103800 Phaseolus vulgaris HOM05D002183 ORTHO05D002169 4.5e-33 146.0 201 43.3
CARHR281710 Cardamine hirsuta HOM05D002183 ORTHO05D002169 3.9e-29 132.9 181 45.3
Nn5g30855 Nelumbo nucifera HOM05D000315 ORTHO05D000527 3.3e-28 129.8 178 41.6
GSVIVG01005493001 Vitis vinifera HOM05D002183 ORTHO05D002169 3.7e-27 126.3 84 73.8
RhsimUnG0152300 Rhododendron simsii HOM05D002183 ORTHO05D002169 6.5e-24 115.5 109 52.3
RhsimUnG0152400 Rhododendron simsii HOM05D000228 ORTHO05D001545 1.4e-23 114.4 110 50.9
Mapoly0082s0073 Marchantia polymorpha HOM05D002183 ORTHO05D002169 9.7e-20 101.7 202 33.2
SMO146G0012 Selaginella moellendorffii HOM05D002183 ORTHO05D002169 2.2e-16 90.5 296 29.4
AUR62038047 Chenopodium quinoa HOM05D002183 ORTHO05D002169 4.8e-11 72.8 252 27.8
Actinidia27743 Actinidia chinensis HOM05D002183 ORTHO05D002169 6.3e-11 72.4 132 36.4
Pp3c1_7540 Physcomitrium patens HOM05D002183 ORTHO05D002169 1.4e-10 71.2 276 24.3
ATR0585G127 Amborella trichopoda HOM05D002183 ORTHO05D002169 1.6e-09 67.8 264 30.3
TWI12G1188 Tripterygium wilfordii HOM05D002183 ORTHO05D002169 3.5e-09 66.6 284 27.1
Dinv39450 Davidia involucrata HOM05D002183 ORTHO05D002169 4.5e-09 66.2 280 26.4
Migut.C00759 Erythranthe guttata HOM05D002183 ORTHO05D002169 4.5e-09 66.2 277 26.4
CiPaw.08G060000 Carya illinoinensis HOM05D002183 ORTHO05D002169 5.9e-09 65.9 276 26.1
CAN.G847.4 Capsicum annuum HOM05D002183 ORTHO05D002169 1.3e-08 64.7 279 25.8
Pp3c2_32990 Physcomitrium patens HOM05D002183 ORTHO05D002169 1.7e-08 64.3 201 24.4
QL08p060283 Quercus lobata HOM05D002183 ORTHO05D002169 2.2e-08 63.9 47 59.6
AUR62014491 Chenopodium quinoa HOM05D002183 ORTHO05D002169 3.8e-08 63.2 293 26.6
arahy.Tifrunner.gnm1.ann1.3FQ6RN Arachis hypogaea HOM05D002183 ORTHO05D002169 5.0e-08 62.8 261 26.4
arahy.Tifrunner.gnm1.ann1.C9WYXW Arachis hypogaea HOM05D002183 ORTHO05D002169 5.0e-08 62.8 261 26.4
Oeu047765.2 Olea europaea HOM05D002183 ORTHO05D002169 5.0e-08 62.8 277 26.4
Pp3c14_19190 Physcomitrium patens HOM05D002183 ORTHO05D002169 5.0e-08 62.8 188 27.7
Thecc.08G032300 Theobroma cacao HOM05D002183 ORTHO05D002169 5.0e-08 62.8 288 26.0
COL.COLO4_22501 Corchorus olitorius HOM05D005999 ORTHO05D003360 6.5e-08 62.4 38 76.3
DCAR_022462 Daucus carota HOM05D002183 ORTHO05D002169 6.5e-08 62.4 90 43.3
Duzib116G0119 Durio zibethinus HOM05D002183 ORTHO05D002169 8.5e-08 62.0 317 23.3
CSS0012198 Camellia sinensis var. sinensis HOM05D002183 ORTHO05D002169 1.1e-07 61.6 273 25.3
Sopen04g034290 Solanum pennellii HOM05D002183 ORTHO05D002169 1.1e-07 61.6 277 26.7
RcHm_v2.0_Chr6g0301571 Rosa chinensis HOM05D002183 ORTHO05D002169 1.5e-07 61.2 274 25.5
CiPaw.07G158000 Carya illinoinensis HOM05D002183 ORTHO05D002169 1.9e-07 60.8 279 25.1
Potri.005G230600 Populus trichocarpa HOM05D002183 ORTHO05D002169 2.5e-07 60.5 285 24.9
Haze_22542 Corylus avellana HOM05D002183 ORTHO05D002169 3.2e-07 60.1 245 26.9
Gohir.D02G095600 Gossypium hirsutum HOM05D002183 ORTHO05D002169 3.2e-07 60.1 315 25.4
Gorai.005G109300 Gossypium raimondii HOM05D002183 ORTHO05D002169 3.2e-07 60.1 315 25.4
Oeu002821.2 Olea europaea HOM05D002183 ORTHO05D002169 3.2e-07 60.1 276 27.2
CAN.G710.10 Capsicum annuum HOM05D002183 ORTHO05D002169 4.2e-07 59.7 283 25.8
FAN20G2224 Fragaria x ananassa HOM05D002183 ORTHO05D002169 4.2e-07 59.7 274 24.5
Gohir.A06G008000 Gossypium hirsutum HOM05D002183 ORTHO05D002169 4.2e-07 59.7 269 26.0
PGSC0003DMG402003745 Solanum tuberosum HOM05D002183 ORTHO05D002169 4.2e-07 59.7 277 26.4
Ah.05g176900 Amaranthus hybridus HOM05D002183 ORTHO05D002169 5.5e-07 59.3 176 30.1
PGR083G2726 Punica granatum HOM05D002183 ORTHO05D002169 5.5e-07 59.3 281 26.3
TWI56G1271 Tripterygium wilfordii HOM05D002183 ORTHO05D002169 5.5e-07 59.3 282 25.5
Atru.chr13.419 Acer truncatum HOM05D002183 ORTHO05D002169 7.2e-07 58.9 281 25.6
FAN27G3278 Fragaria x ananassa HOM05D000394 ORTHO05D000299 7.2e-07 58.9 255 25.1
Potri.002G032500 Populus trichocarpa HOM05D002183 ORTHO05D002169 7.2e-07 58.9 291 24.7
CBR_g48537 Chara braunii HOM05D002183 ORTHO05D002169 9.4e-07 58.5 192 27.6
Gohir.A03G079700 Gossypium hirsutum HOM05D002183 ORTHO05D002169 9.4e-07 58.5 315 25.1
SGA_v2.0_scaffold11G05839 Striga asiatica HOM05D002183 ORTHO05D002169 9.4e-07 58.5 279 23.7
CSS0024303 Camellia sinensis var. sinensis HOM05D002183 ORTHO05D002169 1.2e-06 58.2 277 24.9
CANSAT25G2082 Cannabis sativa HOM05D002183 ORTHO05D002169 1.2e-06 58.2 272 25.4
ECA247G3675 Erigeron canadensis HOM05D002183 ORTHO05D002169 1.2e-06 58.2 276 26.1
Gohir.D05G194800 Gossypium hirsutum HOM05D002183 ORTHO05D002169 1.6e-06 57.8 296 24.7
GSVIVG01009760001 Vitis vinifera HOM05D002183 ORTHO05D002169 1.6e-06 57.8 281 24.6
Migut.E00170 Erythranthe guttata HOM05D002183 ORTHO05D002169 2.1e-06 57.4 251 25.5
FvH4_2g39410 Fragaria vesca HOM05D002183 ORTHO05D002169 2.7e-06 57.0 273 24.9
Lj1g0001454 Lotus japonicus HOM05D002183 ORTHO05D002169 2.7e-06 57.0 284 25.7
vmacro21676 Vaccinium macrocarpon HOM05D002183 ORTHO05D002169 2.7e-06 57.0 271 25.1
arahy.Tifrunner.gnm1.ann1.FN6QZN Arachis hypogaea HOM05D002183 ORTHO05D002169 3.6e-06 56.6 275 27.3
arahy.Tifrunner.gnm1.ann1.QE05K9 Arachis hypogaea HOM05D002183 ORTHO05D002169 3.6e-06 56.6 275 27.3
SMO365G0031 Selaginella moellendorffii HOM05D002183 ORTHO05D002169 3.6e-06 56.6 183 27.3
MSTRG.1257 Avicennia marina HOM05D002183 ORTHO05D002169 4.7e-06 56.2 82 42.7
Rhsim06G0029100 Rhododendron simsii HOM05D002183 ORTHO05D002169 4.7e-06 56.2 289 24.2
MSTRG.22311 Avicennia marina HOM05D002183 ORTHO05D002169 6.1e-06 55.8 278 25.2
CBR_g3165 Chara braunii HOM05D002183 ORTHO05D002169 6.1e-06 55.8 79 43.0
Ciclev10001796m.g Citrus clementina HOM05D002183 ORTHO05D002169 6.1e-06 55.8 279 24.7
Cc10_g02510 Coffea canephora HOM05D002183 ORTHO05D002169 6.1e-06 55.8 280 24.6
CsaV3_3G045430 Cucumis sativus L. HOM05D002183 ORTHO05D002169 6.1e-06 55.8 289 24.9
ECA246G2632 Erigeron canadensis HOM05D002183 ORTHO05D002169 6.1e-06 55.8 271 25.1
Lalb_Chr14g0369461 Lupinus albus HOM05D002183 ORTHO05D002169 6.1e-06 55.8 284 25.4
Lalb_Chr22g0354611 Lupinus albus HOM05D002183 ORTHO05D002169 6.1e-06 55.8 281 25.3
Prupe.1G375100 Prunus persica HOM05D002183 ORTHO05D002169 6.1e-06 55.8 83 42.2
MELO3C003799.2 Cucumis melo HOM05D002183 ORTHO05D002169 8.0e-06 55.5 271 26.2
Gohir.D06G003700 Gossypium hirsutum HOM05D002183 ORTHO05D002169 8.0e-06 55.5 279 24.4
Manes.18G020500 Manihot esculenta HOM05D002183 ORTHO05D002169 8.0e-06 55.5 263 26.2


User provided reference genes

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