Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc6.265 Carica papaya HOM05D006469 ORTHO05D008034 2.3e-102 375.6 184 100.0
AT4G35987 Arabidopsis thaliana HOM05D006469 ORTHO05D008034 2.3e-62 242.7 172 69.8
Sp7g33770 Schrenkiella parvula HOM05D006469 ORTHO05D008034 3.9e-62 241.9 172 68.6
Thhalv10025786m.g Eutrema salsugineum HOM05D006469 ORTHO05D008034 1.9e-61 239.6 171 68.4
Carub.0007s0423 Capsella rubella HOM05D006469 ORTHO05D008034 3.3e-61 238.8 172 68.0
Ciclev10026134m.g Citrus clementina HOM05D006469 ORTHO05D008034 4.8e-60 235.0 184 65.2
Dinv33650 Davidia involucrata HOM05D006469 ORTHO05D008034 4.8e-60 235.0 174 67.2
C01p03020 Brassica napus HOM05D006469 ORTHO05D008034 1.4e-59 233.4 172 65.1
BolC1t00288H Brassica oleracea HOM05D006469 ORTHO05D008034 1.4e-59 233.4 172 65.1
Prupe.7G169600 Prunus persica HOM05D006469 ORTHO05D008034 1.8e-59 233.0 163 72.4
BraA01t00258Z Brassica rapa HOM05D006469 ORTHO05D008034 3.1e-59 232.3 172 65.7
BcaNung00773 Brassica carinata HOM05D006469 ORTHO05D008034 4.0e-59 231.9 172 66.3
CARHR244380 Cardamine hirsuta HOM05D006469 ORTHO05D008034 5.3e-59 231.5 172 65.1
RcHm_v2.0_Chr2g0099281 Rosa chinensis HOM05D006469 ORTHO05D008034 6.9e-59 231.1 177 66.1
A01p02720 Brassica napus HOM05D006469 ORTHO05D008034 9.0e-59 230.7 172 65.1
Aa31LG6G12960 Aethionema arabicum HOM05D006469 ORTHO05D008034 9.9e-58 227.3 175 63.4
MD02G1130100 Malus domestica HOM05D006469 ORTHO05D008034 4.9e-57 224.9 182 63.7
FvH4_1g11701 Fragaria vesca HOM05D006469 ORTHO05D008034 1.1e-56 223.8 177 65.0
Lj4A220G94 Lonicera japonica HOM05D006469 ORTHO05D008034 1.4e-56 223.4 177 62.7
Manes.02G105600 Manihot esculenta HOM05D006469 ORTHO05D008034 1.9e-56 223.0 182 60.4
Thecc.01G016800 Theobroma cacao HOM05D006469 ORTHO05D008034 2.4e-56 222.6 161 68.9
GSVIVG01018765001 Vitis vinifera HOM05D006469 ORTHO05D008034 3.2e-56 222.2 177 61.0
FAN19G1692 Fragaria x ananassa HOM05D006469 ORTHO05D008034 7.1e-56 221.1 165 67.9
Potri.007G057000 Populus trichocarpa HOM05D006469 ORTHO05D008034 7.1e-56 221.1 164 67.1
Haze_03751 Corylus avellana HOM05D006469 ORTHO05D008034 1.6e-55 219.9 186 60.2
Gohir.A02G171200 Gossypium hirsutum HOM05D006469 ORTHO05D008034 1.6e-55 219.9 164 65.2
Lj4g0017154 Lotus japonicus HOM05D006469 ORTHO05D008034 1.6e-55 219.9 180 62.2
Psat4g100640 Pisum sativum HOM05D006469 ORTHO05D008034 2.1e-55 219.5 179 61.5
QL06p050760 Quercus lobata HOM05D006469 ORTHO05D008034 3.5e-55 218.8 190 59.5
Gorai.003G009100 Gossypium raimondii HOM05D006469 ORTHO05D008034 4.6e-55 218.4 165 64.2
Gohir.D03G008900 Gossypium hirsutum HOM05D006469 ORTHO05D008034 7.9e-55 217.6 165 64.2
TPR.G24083 Trifolium pratense HOM05D006469 ORTHO05D008034 7.9e-55 217.6 177 62.1
Sabra07G0048900 Salix brachista HOM05D006469 ORTHO05D008034 1.3e-54 216.9 178 61.8
Atru.chr3.815 Acer truncatum HOM05D006469 ORTHO05D008034 3.0e-54 215.7 185 63.2
Phvul.003G263600 Phaseolus vulgaris HOM05D006469 ORTHO05D008034 3.0e-54 215.7 179 61.5
QL06p050655 Quercus lobata HOM05D006469 ORTHO05D008034 3.0e-54 215.7 190 58.9
VMungo0251G1912 Vigna mungo HOM05D006469 ORTHO05D008034 3.9e-54 215.3 169 63.3
arahy.Tifrunner.gnm1.ann1.DLPQ3A Arachis hypogaea HOM05D006469 ORTHO05D008034 9.6e-53 210.7 184 60.3
Glyma.02G047300 Glycine max HOM05D006469 ORTHO05D008034 9.6e-53 210.7 179 60.3
Medtr8g075480 Medicago truncatula HOM05D006469 ORTHO05D008034 1.3e-52 210.3 185 58.9
SalBow5G1778 Salvia bowleyana HOM05D006469 ORTHO05D008034 1.3e-52 210.3 172 60.5
PGR102G1692 Punica granatum HOM05D006469 ORTHO05D008034 2.1e-52 209.5 187 59.4
CiPaw.07G059900 Carya illinoinensis HOM05D006469 ORTHO05D008034 6.2e-52 208.0 197 56.3
arahy.Tifrunner.gnm1.ann1.S7P5W6 Arachis hypogaea HOM05D006469 ORTHO05D008034 8.1e-52 207.6 182 59.3
Sc07g0001050 Simmondsia chinensis HOM05D006469 ORTHO05D008034 1.8e-51 206.5 167 60.5
Migut.L00672 Erythranthe guttata HOM05D006469 ORTHO05D008034 4.0e-51 205.3 180 55.6
Lsat_1_v5_gn_2_76041 Lactuca sativa HOM05D006469 ORTHO05D008034 9.0e-51 204.1 188 56.9
TAR376G0066 Trochodendron aralioides HOM05D006469 ORTHO05D008034 1.5e-50 203.4 174 61.5
Lalb_Chr05g0229831 Lupinus albus HOM05D006469 ORTHO05D008034 2.0e-50 203.0 177 58.8
MELO3C007914.2 Cucumis melo HOM05D006469 ORTHO05D008034 4.5e-50 201.8 171 57.9
CAN.G1817.1 Capsicum annuum HOM05D006469 ORTHO05D008034 7.6e-50 201.1 187 54.0
Nn6g32040 Nelumbo nucifera HOM05D006469 ORTHO05D008034 9.9e-50 200.7 191 55.5
Hund14051 Selenicereus undatus HOM05D006469 ORTHO05D008034 9.9e-50 200.7 177 57.1
CANSAT25G3476 Cannabis sativa HOM05D006469 ORTHO05D008034 2.2e-49 199.5 192 56.2
CsaV3_6G047220 Cucumis sativus L. HOM05D006469 ORTHO05D008034 3.8e-49 198.7 171 56.7
PGSC0003DMG402022530 Solanum tuberosum HOM05D006469 ORTHO05D008034 3.8e-49 198.7 182 53.8
AUR62029479 Chenopodium quinoa HOM05D006469 ORTHO05D008034 4.9e-49 198.4 173 60.1
Sopen03g006220 Solanum pennellii HOM05D006469 ORTHO05D008034 6.4e-49 198.0 183 54.6
EL10Ac6g15486 Beta vulgaris HOM05D006469 ORTHO05D008034 8.4e-49 197.6 175 60.6
FAN26G2561 Fragaria x ananassa HOM05D006469 ORTHO05D008034 1.1e-48 197.2 169 60.4
Eucgr.I02338 Eucalyptus grandis HOM05D006469 ORTHO05D008034 1.4e-48 196.8 184 58.2
CANSAT25G3534 Cannabis sativa HOM05D006469 ORTHO05D008034 3.2e-48 195.7 191 55.5
Migut.L00699 Erythranthe guttata HOM05D006469 ORTHO05D008034 3.2e-48 195.7 180 54.4
FAN23G0491 Fragaria x ananassa HOM05D000153 ORTHO05D000118 3.2e-48 195.7 143 66.4
Solyc03g033470.3 Solanum lycopersicum HOM05D006469 ORTHO05D008034 3.2e-48 195.7 183 54.1
MSTRG.3610 Avicennia marina HOM05D006469 ORTHO05D008034 5.4e-48 194.9 182 54.4
Actinidia17434 Actinidia chinensis HOM05D006469 ORTHO05D008034 2.1e-47 193.0 175 56.6
HanXRQChr04g0119941 Helianthus annuus HOM05D006469 ORTHO05D008034 3.5e-47 192.2 190 53.7
Ah.03g148920 Amaranthus hybridus HOM05D006469 ORTHO05D008034 4.6e-47 191.8 169 58.6
QL11p035074 Quercus lobata HOM05D006469 ORTHO05D008034 3.9e-46 188.7 246 45.5
TWI73G0981 Tripterygium wilfordii HOM05D006469 ORTHO05D008034 3.9e-46 188.7 178 56.2
PSO170G4882 Papaver somniferum HOM05D006469 ORTHO05D008034 1.9e-45 186.4 186 55.4
Nitab4.5_0003548g0050 Nicotiana tabacum HOM05D006469 ORTHO05D008034 4.3e-45 185.3 137 62.0
unitig_46.g18721 Utricularia gibba HOM05D006469 ORTHO05D008034 5.6e-45 184.9 165 57.6
Cc07_g10870 Coffea canephora HOM05D006469 ORTHO05D008034 7.4e-45 184.5 187 53.5
Cfa006983 Carpinus fangiana HOM05D006469 ORTHO05D008034 1.3e-44 183.7 173 54.9
PSO700G0153 Papaver somniferum HOM05D006469 ORTHO05D008034 1.5e-42 176.8 155 57.4
Os03g0243800 Oryza sativa ssp. japonica HOM05D006469 ORTHO05D008034 2.6e-42 176.0 198 48.5
Zm00001eb398850 Zea mays HOM05D006469 ORTHO05D008034 4.9e-41 171.8 174 52.3
Oeu005141.2 Olea europaea HOM05D006469 ORTHO05D008034 2.5e-40 169.5 191 47.6
Hma1.2p1_0258F.1_g104050 Hydrangea macrophylla HOM05D006469 ORTHO05D008034 3.2e-40 169.1 116 66.4
BcaC03g14989 Brassica carinata HOM05D006469 ORTHO05D008034 4.6e-39 165.2 168 54.8
ECA238G1797 Erigeron canadensis HOM05D006469 ORTHO05D008034 4.6e-39 165.2 182 49.5
SGA_v2.0_scaffold45G17085 Striga asiatica HOM05D006469 ORTHO05D008034 4.6e-39 165.2 268 36.6
Nitab4.5_0000864g0140 Nicotiana tabacum HOM05D006469 ORTHO05D008034 3.0e-38 162.5 175 52.0
CDE02G4243 Ceratophyllum demersum HOM05D006469 ORTHO05D008034 5.1e-38 161.8 177 45.2
Aqoxy5G01802 Aquilegia oxysepala HOM05D006469 ORTHO05D008034 7.4e-37 157.9 169 48.5
ATR0810G135 Amborella trichopoda HOM05D006469 ORTHO05D008034 1.8e-35 153.3 173 48.0
CSS0000310 Camellia sinensis var. sinensis HOM05D006469 ORTHO05D008034 2.4e-35 152.9 176 50.6
C09p44210 Brassica napus HOM05D006469 ORTHO05D008034 3.1e-35 152.5 174 51.1
BcaC04g20386 Brassica carinata HOM05D006469 ORTHO05D008034 2.0e-34 149.8 159 51.6
BcaC04g20390 Brassica carinata HOM05D006469 ORTHO05D008034 2.0e-34 149.8 159 51.6
BolC9t57293H Brassica oleracea HOM05D006469 ORTHO05D008034 2.0e-34 149.8 159 51.6
CSS0021178 Camellia sinensis var. sinensis HOM05D006469 ORTHO05D008034 4.5e-34 148.7 176 49.4
Nitab4.5_0008011g0040 Nicotiana tabacum HOM05D006469 ORTHO05D008034 1.7e-33 146.7 182 44.5
Pp3c16_25190 Physcomitrium patens HOM05D006469 ORTHO05D008034 3.2e-32 142.5 165 43.0
ClCG01G020380 Citrullus lanatus HOM05D000348 ORTHO05D000244 4.2e-32 142.1 200 43.0
THA.LOC104807502 Tarenaya hassleriana HOM05D006469 ORTHO05D008034 5.5e-32 141.7 112 62.5
Mapoly0087s0053 Marchantia polymorpha HOM05D006469 ORTHO05D008034 7.2e-32 141.4 175 41.1
Peaxi162Scf00328g00828 Petunia axillaris HOM05D006469 ORTHO05D008034 7.2e-32 141.4 231 39.4
AUR62003357 Chenopodium quinoa HOM05D006469 ORTHO05D008034 1.0e-30 137.5 82 73.2
MBI05_g33508_MAGBIO Magnolia biondii HOM05D006469 ORTHO05D008034 1.6e-28 130.2 84 66.7
Actinidia22967 Actinidia chinensis HOM05D006469 ORTHO05D008034 4.8e-28 128.6 154 44.8
Sed0020941 Sechium edule HOM05D006469 ORTHO05D008034 1.4e-27 127.1 80 70.0
Sabra05G0092400 Salix brachista HOM05D006469 ORTHO05D008034 2.6e-26 122.9 152 46.1
DCAR_021507 Daucus carota HOM05D006469 ORTHO05D008034 7.2e-24 114.8 114 53.5
BolC2t08600H Brassica oleracea HOM05D006469 ORTHO05D008034 1.1e-21 107.5 143 44.8
Hma1.2p1_0258F.1_g104040 Hydrangea macrophylla HOM05D006469 ORTHO05D008034 3.1e-19 99.4 69 66.7
Ca_22385_v3 Cicer arietinum L. HOM05D006469 ORTHO05D008034 5.9e-18 95.1 70 62.9
Duzib147G1015 Durio zibethinus HOM05D006469 ORTHO05D008034 1.4e-16 90.5 93 53.8
Manes.01G147000 Manihot esculenta HOM05D006469 ORTHO05D008034 1.2e-15 87.4 158 38.6
COL.COLO4_22441 Corchorus olitorius HOM05D006469 ORTHO05D008034 3.6e-15 85.9 83 55.4
SMO361G0665 Selaginella moellendorffii HOM05D006469 ORTHO05D008034 1.5e-13 80.5 54 61.1
Nitab4.5_0000438g0170 Nicotiana tabacum HOM05D006469 ORTHO05D008034 4.1e-11 72.4 83 48.2
C02p25250 Brassica napus HOM05D006469 ORTHO05D008034 1.1e-08 64.3 61 60.7


User provided reference genes

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