Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc6.148 Carica papaya HOM05D003805 ORTHO05D004300 1.7e-73 279.3 140 100.0
Duzib264G0487 Durio zibethinus HOM05D003805 ORTHO05D004300 9.9e-26 120.6 146 49.3
Thecc.01G031800 Theobroma cacao HOM05D003805 ORTHO05D004300 9.9e-26 120.6 148 47.3
QL06p047086 Quercus lobata HOM05D003805 ORTHO05D004300 1.9e-24 116.3 139 50.4
Gorai.007G201700 Gossypium raimondii HOM05D003805 ORTHO05D004300 1.2e-23 113.6 144 50.0
Haze_15065 Corylus avellana HOM05D000625 ORTHO05D010258 1.6e-23 113.2 137 49.6
DCAR_016030 Daucus carota HOM05D003805 ORTHO05D004300 4.6e-23 111.7 138 48.6
Gohir.D11G189500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 1.0e-22 110.5 140 50.0
CSS0002171 Camellia sinensis var. sinensis HOM05D003805 ORTHO05D004300 1.3e-22 110.2 141 48.2
Duzib147G0407 Durio zibethinus HOM05D003805 ORTHO05D004300 1.8e-22 109.8 146 45.9
Gohir.D12G063500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 3.0e-22 109.0 150 48.0
Gorai.008G066800 Gossypium raimondii HOM05D003805 ORTHO05D004300 3.0e-22 109.0 150 48.0
Hma1.2p1_1297F.1_g274110 Hydrangea macrophylla HOM05D003805 ORTHO05D004300 3.0e-22 109.0 140 47.9
Gohir.A11G183100 Gossypium hirsutum HOM05D003805 ORTHO05D004300 3.9e-22 108.6 140 48.6
Sed0017680 Sechium edule HOM05D003805 ORTHO05D004300 6.7e-22 107.8 138 47.1
GSVIVG01018926001 Vitis vinifera HOM05D003805 ORTHO05D004300 1.5e-21 106.7 140 47.1
Gohir.A12G063700 Gossypium hirsutum HOM05D003805 ORTHO05D004300 5.6e-21 104.8 149 47.7
Potri.007G022300 Populus trichocarpa HOM05D003805 ORTHO05D004300 9.6e-21 104.0 127 51.2
THA.LOC104807465 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 9.6e-21 104.0 140 44.3
Sed0008243 Sechium edule HOM05D003805 ORTHO05D004300 1.3e-20 103.6 138 47.1
Sabra07G0019500 Salix brachista HOM05D003805 ORTHO05D004300 2.1e-20 102.8 127 50.4
Aa31LG6G13290 Aethionema arabicum HOM05D003805 ORTHO05D004300 3.7e-20 102.1 143 44.8
PGR119G0937 Punica granatum HOM05D003805 ORTHO05D004300 4.8e-20 101.7 141 45.4
TWI09G1369 Tripterygium wilfordii HOM05D003805 ORTHO05D004300 1.4e-19 100.1 139 43.2
BcaB01g00567 Brassica carinata HOM05D003805 ORTHO05D004300 2.4e-19 99.4 144 44.4
Ah.03g141100 Amaranthus hybridus HOM05D003805 ORTHO05D004300 5.3e-19 98.2 149 41.6
MELO3C007840.2 Cucumis melo HOM05D003805 ORTHO05D004300 5.3e-19 98.2 139 42.4
HanXRQChr07g0191651 Helianthus annuus HOM05D003805 ORTHO05D004300 6.9e-19 97.8 135 42.2
BcaC07g39558 Brassica carinata HOM05D003805 ORTHO05D004300 1.5e-18 96.7 145 44.8
C08p26110 Brassica napus HOM05D003805 ORTHO05D004300 1.5e-18 96.7 145 44.8
BolC8t50229H Brassica oleracea HOM05D003805 ORTHO05D004300 1.5e-18 96.7 145 44.8
COL.COLO4_22043 Corchorus olitorius HOM05D003805 ORTHO05D004300 2.0e-18 96.3 147 43.5
Dinv40009 Davidia involucrata HOM05D002962 ORTHO05D004300 1.0e-17 94.0 125 48.0
Manes.01G137700 Manihot esculenta HOM05D003805 ORTHO05D004300 1.0e-17 94.0 145 44.1
Carub.0007s0382 Capsella rubella HOM05D003805 ORTHO05D004300 1.3e-17 93.6 146 42.5
Atru.chr3.624 Acer truncatum HOM05D003805 ORTHO05D004300 1.7e-17 93.2 99 55.6
AL7G14560 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 2.2e-17 92.8 146 41.8
Oeu035340.1 Olea europaea HOM05D003805 ORTHO05D004300 2.2e-17 92.8 141 44.0
CsaV3_6G046430 Cucumis sativus L. HOM05D003805 ORTHO05D004300 2.9e-17 92.4 133 44.4
Thhalv10010834m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 2.9e-17 92.4 147 42.9
AT4G36500 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 3.8e-17 92.0 146 41.8
AT2G18210 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 4.9e-17 91.7 144 41.0
Carub.0003s3236 Capsella rubella HOM05D003805 ORTHO05D004300 4.9e-17 91.7 144 41.7
Carub.0003s3237 Capsella rubella HOM05D003805 ORTHO05D004300 4.9e-17 91.7 144 41.7
AL5G31260 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 6.5e-17 91.3 147 40.8
Sp7g34150 Schrenkiella parvula HOM05D003805 ORTHO05D004300 6.5e-17 91.3 142 40.1
THA.LOC104819775 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 6.5e-17 91.3 147 40.8
Aa31LG4G19000 Aethionema arabicum HOM05D003805 ORTHO05D004300 8.4e-17 90.9 146 41.1
PGSC0003DMG400003519 Solanum tuberosum HOM05D003805 ORTHO05D004300 8.4e-17 90.9 137 41.6
AT3G50900 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 1.1e-16 90.5 147 40.8
BcaB03g12394 Brassica carinata HOM05D003805 ORTHO05D004300 1.1e-16 90.5 142 40.8
CARHR244820 Cardamine hirsuta HOM05D003805 ORTHO05D004300 1.1e-16 90.5 146 42.5
Lalb_Chr09g0322201 Lupinus albus HOM05D003805 ORTHO05D004300 1.1e-16 90.5 139 38.8
C01p02570 Brassica napus HOM05D003805 ORTHO05D004300 1.4e-16 90.1 146 39.7
Lsat_1_v5_gn_2_77300 Lactuca sativa HOM05D003805 ORTHO05D004300 1.4e-16 90.1 138 38.4
Lsat_1_v5_gn_2_77320 Lactuca sativa HOM05D003805 ORTHO05D004300 1.4e-16 90.1 138 38.4
A01p23830 Brassica napus HOM05D003805 ORTHO05D004300 1.9e-16 89.7 146 40.4
A08p22170 Brassica napus HOM05D003805 ORTHO05D004300 1.9e-16 89.7 142 41.5
BraA01t02291Z Brassica rapa HOM05D003805 ORTHO05D004300 1.9e-16 89.7 146 40.4
Manes.02G096100 Manihot esculenta HOM05D003805 ORTHO05D004300 1.9e-16 89.7 140 44.3
BraA08t34177Z Brassica rapa HOM05D003805 ORTHO05D004300 2.5e-16 89.4 142 40.8
Thhalv10026576m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 3.2e-16 89.0 146 41.1
Sp7g34160 Schrenkiella parvula HOM05D003805 ORTHO05D004300 3.2e-16 89.0 146 39.0
A01p02360 Brassica napus HOM05D003805 ORTHO05D004300 4.2e-16 88.6 143 38.5
BolC1t00245H Brassica oleracea HOM05D003805 ORTHO05D004300 4.2e-16 88.6 146 39.0
AL3G51440 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 5.5e-16 88.2 144 40.3
BcaNung05311 Brassica carinata HOM05D003805 ORTHO05D004300 5.5e-16 88.2 143 37.8
A01p02370 Brassica napus HOM05D003805 ORTHO05D004300 5.5e-16 88.2 143 37.8
BraA01t00225Z Brassica rapa HOM05D003805 ORTHO05D004300 5.5e-16 88.2 143 37.8
Sp1g22390 Schrenkiella parvula HOM05D003805 ORTHO05D004300 5.5e-16 88.2 145 39.3
BcaNung00728 Brassica carinata HOM05D003805 ORTHO05D004300 7.1e-16 87.8 146 39.0
BcaNung00729 Brassica carinata HOM05D003805 ORTHO05D004300 7.1e-16 87.8 143 37.8
C01p02580 Brassica napus HOM05D003805 ORTHO05D004300 7.1e-16 87.8 143 37.8
C07p61730 Brassica napus HOM05D003805 ORTHO05D004300 7.1e-16 87.8 146 39.7
BolC1t00246H Brassica oleracea HOM05D003805 ORTHO05D004300 7.1e-16 87.8 143 37.8
BolC7t46598H Brassica oleracea HOM05D003805 ORTHO05D004300 7.1e-16 87.8 146 39.7
Carub.0005s1729 Capsella rubella HOM05D003805 ORTHO05D004300 7.1e-16 87.8 150 40.0
CARHR160470 Cardamine hirsuta HOM05D003805 ORTHO05D004300 7.1e-16 87.8 154 39.6
Lj4g0028115 Lotus japonicus HOM05D003805 ORTHO05D004300 7.1e-16 87.8 139 42.4
arahy.Tifrunner.gnm1.ann1.IAMR94 Arachis hypogaea HOM05D003805 ORTHO05D004300 9.3e-16 87.4 137 36.5
A09p44010 Brassica napus HOM05D003805 ORTHO05D004300 9.3e-16 87.4 139 43.9
BraA09t39859Z Brassica rapa HOM05D003805 ORTHO05D004300 9.3e-16 87.4 139 43.9
Glyma.01G172100 Glycine max HOM05D003805 ORTHO05D004300 9.3e-16 87.4 139 41.0
Glyma.11G071100 Glycine max HOM05D003805 ORTHO05D004300 9.3e-16 87.4 139 38.8
BcaC01g00464 Brassica carinata HOM05D003805 ORTHO05D004300 1.2e-15 87.0 142 40.1
C03p80150 Brassica napus HOM05D003805 ORTHO05D004300 1.2e-15 87.0 142 40.1
BolC3t20271H Brassica oleracea HOM05D003805 ORTHO05D004300 1.2e-15 87.0 142 40.1
Lj4g0007128 Lotus japonicus HOM05D003805 ORTHO05D004300 1.6e-15 86.7 139 41.7
Nitab4.5_0000178g0280 Nicotiana tabacum HOM05D003805 ORTHO05D004300 1.6e-15 86.7 136 36.8
Nitab4.5_0012261g0010 Nicotiana tabacum HOM05D003805 ORTHO05D004300 2.7e-15 85.9 128 39.8
BcaNung05312 Brassica carinata HOM05D003805 ORTHO05D004300 3.5e-15 85.5 146 37.7
BraA01t00224Z Brassica rapa HOM05D003805 ORTHO05D004300 4.6e-15 85.1 143 37.1
BcaB05g23252 Brassica carinata HOM05D003805 ORTHO05D004300 6.0e-15 84.7 147 40.1
Lj4g0009905 Lotus japonicus HOM05D003805 ORTHO05D004300 6.0e-15 84.7 139 41.0
Sp2g30240 Schrenkiella parvula HOM05D003805 ORTHO05D004300 6.0e-15 84.7 148 40.5
A03p64280 Brassica napus HOM05D003805 ORTHO05D004300 7.9e-15 84.3 146 39.0
BraA03t15498Z Brassica rapa HOM05D003805 ORTHO05D004300 7.9e-15 84.3 146 39.0
SalBow8G4897 Salvia bowleyana HOM05D003805 ORTHO05D004300 7.9e-15 84.3 136 38.2
Lj2g0025508 Lotus japonicus HOM05D003805 ORTHO05D004300 1.0e-14 84.0 142 38.0
Sc16g0002610 Simmondsia chinensis HOM05D003805 ORTHO05D004300 1.3e-14 83.6 144 41.0
TPR.G24112 Trifolium pratense HOM05D003805 ORTHO05D004300 1.3e-14 83.6 139 39.6
ECA238G4264 Erigeron canadensis HOM05D003805 ORTHO05D004300 1.8e-14 83.2 141 36.9
Medtr8g077145 Medicago truncatula HOM05D003805 ORTHO05D004300 1.8e-14 83.2 141 38.3
HanXRQChr14g0440581 Helianthus annuus HOM05D003805 ORTHO05D004300 2.3e-14 82.8 138 36.2
Ca_22293_v3 Cicer arietinum L. HOM05D003805 ORTHO05D004300 3.9e-14 82.0 141 38.3
CARHR281260 Cardamine hirsuta HOM05D003805 ORTHO05D004300 5.1e-14 81.6 145 39.3
CAN.G358.54 Capsicum annuum HOM05D003805 ORTHO05D004300 6.7e-14 81.3 137 40.9
Phvul.003G255400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 6.7e-14 81.3 137 41.6
Psat4g094760 Pisum sativum HOM05D003805 ORTHO05D004300 6.7e-14 81.3 140 37.1
VMungo0251G0164 Vigna mungo HOM05D003805 ORTHO05D004300 1.1e-13 80.5 140 37.9
VMungo1215G0776 Vigna mungo HOM05D003805 ORTHO05D004300 1.1e-13 80.5 139 37.4
Sopen02g029690 Solanum pennellii HOM05D003805 ORTHO05D004300 1.5e-13 80.1 136 37.5
VMungo0251G1302 Vigna mungo HOM05D003805 ORTHO05D004300 1.5e-13 80.1 140 37.9
Lalb_Chr09g0333461 Lupinus albus HOM05D003805 ORTHO05D004300 1.9e-13 79.7 125 40.8
Phvul.003G255300 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 1.9e-13 79.7 136 40.4
Thhalv10023197m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 2.5e-13 79.3 143 37.8
Glyma.02G054900 Glycine max HOM05D003805 ORTHO05D004300 2.5e-13 79.3 139 38.8
Psat4g094720 Pisum sativum HOM05D003805 ORTHO05D004300 2.5e-13 79.3 142 35.2
ECA238G1778 Erigeron canadensis HOM05D003805 ORTHO05D004300 3.3e-13 79.0 131 35.9
Psat2g157880 Pisum sativum HOM05D003805 ORTHO05D004300 3.3e-13 79.0 142 35.2
Psat4g094680 Pisum sativum HOM05D003805 ORTHO05D004300 3.3e-13 79.0 140 36.4
AUR62004083 Chenopodium quinoa HOM05D000625 ORTHO05D000467 4.3e-13 78.6 109 43.1
Phvul.002G032400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 4.3e-13 78.6 139 36.7
Glyma.02G055000 Glycine max HOM05D003805 ORTHO05D004300 5.7e-13 78.2 139 41.0
THA.LOC104826691 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 5.7e-13 78.2 148 35.8
Actinidia19196 Actinidia chinensis HOM05D002962 ORTHO05D003280 7.4e-13 77.8 127 42.5
Sc03g0003120 Simmondsia chinensis HOM05D003805 ORTHO05D004300 7.4e-13 77.8 148 36.5
Solyc02g085005.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 9.6e-13 77.4 136 36.8
Medtr5g020860 Medicago truncatula HOM05D003805 ORTHO05D004300 1.3e-12 77.0 143 37.1
TPR.G24102 Trifolium pratense HOM05D003805 ORTHO05D004300 1.3e-12 77.0 141 37.6
BcaB02g10024 Brassica carinata HOM05D003805 ORTHO05D004300 1.6e-12 76.6 149 37.6
A07p17480 Brassica napus HOM05D000001 ORTHO05D010258 1.6e-12 76.6 154 37.0
SGA_v2.0_scaffold12G06299 Striga asiatica HOM05D003805 ORTHO05D004300 2.8e-12 75.9 125 41.6
A03p48010 Brassica napus HOM05D003805 ORTHO05D004300 3.7e-12 75.5 138 38.4
C07p46020 Brassica napus HOM05D003805 ORTHO05D004300 4.8e-12 75.1 143 35.7
BolC7t45120H Brassica oleracea HOM05D003805 ORTHO05D004300 4.8e-12 75.1 150 36.7
Nn5g29663 Nelumbo nucifera HOM05D003805 ORTHO05D004300 4.8e-12 75.1 135 37.0
Peaxi162Scf00366g00711 Petunia axillaris HOM05D003805 ORTHO05D004300 4.8e-12 75.1 134 37.3
Lalb_Chr16g0391061 Lupinus albus HOM05D003805 ORTHO05D004300 6.3e-12 74.7 140 35.7
Nitab4.5_0007490g0050 Nicotiana tabacum HOM05D003805 ORTHO05D004300 8.2e-12 74.3 130 37.7
BraA03t13909Z Brassica rapa HOM05D003805 ORTHO05D004300 1.1e-11 73.9 153 34.6
Glyma.16G135600 Glycine max HOM05D003805 ORTHO05D004300 1.1e-11 73.9 136 41.2
Peaxi162Scf00366g00066 Petunia axillaris HOM05D003805 ORTHO05D004300 1.1e-11 73.9 130 39.2
Nitab4.5_0000178g0350 Nicotiana tabacum HOM05D003805 ORTHO05D004300 1.4e-11 73.6 130 37.7
Potri.007G022200 Populus trichocarpa HOM05D003805 ORTHO05D004300 1.4e-11 73.6 127 35.4
Thhalv10005334m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 2.4e-11 72.8 148 36.5
Oeu025181.1 Olea europaea HOM05D003805 ORTHO05D004300 2.4e-11 72.8 128 38.3
AL8G45040 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 5.3e-11 71.6 147 35.4
Migut.H02530 Erythranthe guttata HOM05D003805 ORTHO05D004300 5.3e-11 71.6 73 54.8
Peaxi162Scf00366g00073 Petunia axillaris HOM05D003805 ORTHO05D004300 6.9e-11 71.2 121 38.8
AT5G66490 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 9.0e-11 70.9 145 34.5
BcaC09g50052 Brassica carinata HOM05D003805 ORTHO05D004300 2.6e-10 69.3 132 37.9
C01p29550 Brassica napus HOM05D003805 ORTHO05D004300 2.6e-10 69.3 132 37.9
BolC1t02898H Brassica oleracea HOM05D003805 ORTHO05D004300 2.6e-10 69.3 132 37.9
unitig_0.g473 Utricularia gibba HOM05D003805 ORTHO05D004300 2.6e-10 69.3 141 36.2
BcaC06g34708 Brassica carinata HOM05D003805 ORTHO05D004300 4.5e-10 68.6 151 35.8
C07p25410 Brassica napus HOM05D000001 ORTHO05D010258 4.5e-10 68.6 151 35.8
BolC7t43064H Brassica oleracea HOM05D000001 ORTHO05D010258 4.5e-10 68.6 151 35.8
BraA07t29468Z Brassica rapa HOM05D000001 ORTHO05D010258 4.5e-10 68.6 153 35.9
Glyma.16G135400 Glycine max HOM05D003805 ORTHO05D004300 4.5e-10 68.6 59 59.3
SGA_v2.0_scaffold51G18830 Striga asiatica HOM05D003805 ORTHO05D004300 4.5e-10 68.6 123 41.5
Sabra07G0019300 Salix brachista HOM05D003805 ORTHO05D004300 5.9e-10 68.2 126 36.5
TPR.G2362 Trifolium pratense HOM05D003805 ORTHO05D004300 5.9e-10 68.2 144 36.8
Solyc02g085010.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 7.6e-10 67.8 135 37.8
Sopen02g029700 Solanum pennellii HOM05D003805 ORTHO05D004300 3.8e-09 65.5 135 34.1
BcaC06g33330 Brassica carinata HOM05D003805 ORTHO05D004300 6.5e-09 64.7 180 31.7
Aa31LG1G15010 Aethionema arabicum HOM05D003805 ORTHO05D004300 1.4e-08 63.5 145 33.1
PGSC0003DMG400003518 Solanum tuberosum HOM05D003805 ORTHO05D004300 1.4e-08 63.5 130 36.2
PGSC0003DMG401003517 Solanum tuberosum HOM05D003805 ORTHO05D004300 1.4e-08 63.5 130 35.4
PGSC0003DMG402003517 Solanum tuberosum HOM05D003805 ORTHO05D004300 2.5e-08 62.8 123 33.3
TAR247G0001 Trochodendron aralioides HOM05D003805 ORTHO05D004300 2.5e-08 62.8 123 35.8
Lsat_1_v5_gn_8_64500 Lactuca sativa HOM05D003805 ORTHO05D004300 4.2e-08 62.0 52 55.8
Nn1g04930 Nelumbo nucifera HOM05D003805 ORTHO05D004300 4.2e-08 62.0 54 55.6
Thhalv10022919m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 7.9e-07 57.8 144 36.8
BcaC06g33329 Brassica carinata HOM05D003805 ORTHO05D004300 1.8e-06 56.6 144 31.9
BcaC06g33070 Brassica carinata HOM05D003805 ORTHO05D004300 2.3e-06 56.2 182 26.4
Lsat_1_v5_gn_2_77360 Lactuca sativa HOM05D003805 ORTHO05D004300 2.3e-06 56.2 125 32.0
CDE05G0774 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 8.7e-06 54.3 47 55.3


User provided reference genes

Program Settings