Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc6.117 Carica papaya HOM05D004733 ORTHO05D005925 0.0e+00 2072.4 1022 100.0
Ciclev10024776m.g Citrus clementina HOM05D004733 ORTHO05D005925 0.0e+00 1467.6 1071 69.2
Atru.chr3.583 Acer truncatum HOM05D004733 ORTHO05D005925 0.0e+00 1465.7 1062 69.5
THA.LOC104809497 Tarenaya hassleriana HOM05D004733 ORTHO05D005925 0.0e+00 1444.5 1064 67.9
Prupe.7G155300 Prunus persica HOM05D004733 ORTHO05D005925 0.0e+00 1440.2 1037 68.7
CiPaw.02G018200 Carya illinoinensis HOM05D004733 ORTHO05D005925 0.0e+00 1436.4 1061 67.4
GSVIVG01018952001 Vitis vinifera HOM05D004733 ORTHO05D005925 0.0e+00 1431.8 1079 67.0
Manes.02G094400 Manihot esculenta HOM05D004733 ORTHO05D005925 0.0e+00 1430.6 1069 66.7
FvH4_1g13250 Fragaria vesca HOM05D004733 ORTHO05D005925 0.0e+00 1429.8 1057 66.3
CSS0026274 Camellia sinensis var. sinensis HOM05D004733 ORTHO05D005925 0.0e+00 1427.5 1062 67.1
RcHm_v2.0_Chr2g0101431 Rosa chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1424.1 1058 66.2
MD02G1146900 Malus domestica HOM05D004733 ORTHO05D005925 0.0e+00 1422.9 1063 66.8
Carub.0002s0104 Capsella rubella HOM05D004733 ORTHO05D005925 0.0e+00 1417.9 1066 66.9
AL2G11330 Arabidopsis lyrata HOM05D004733 ORTHO05D005925 0.0e+00 1417.1 1066 67.4
Thecc.01G034700 Theobroma cacao HOM05D004733 ORTHO05D005925 0.0e+00 1416.7 1060 67.1
Cfa004311 Carpinus fangiana HOM05D004733 ORTHO05D005925 0.0e+00 1414.8 1055 67.5
Gohir.D11G190600 Gossypium hirsutum HOM05D004733 ORTHO05D005925 0.0e+00 1404.4 1059 66.5
Thhalv10024292m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 0.0e+00 1402.9 1066 66.8
FAN19G0915 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1402.5 1052 65.4
Sp7g34280 Schrenkiella parvula HOM05D004733 ORTHO05D005925 0.0e+00 1401.7 1066 66.8
Nn5g29624 Nelumbo nucifera HOM05D004733 ORTHO05D005925 0.0e+00 1399.4 1062 65.3
AT1G63810 Arabidopsis thaliana HOM05D004733 ORTHO05D005925 0.0e+00 1398.3 1069 66.6
Gohir.A11G184100 Gossypium hirsutum HOM05D004733 ORTHO05D005925 0.0e+00 1397.1 1059 66.3
Potri.007G024600 Populus trichocarpa HOM05D004733 ORTHO05D005925 0.0e+00 1394.0 1068 64.9
Duzib187G1802 Durio zibethinus HOM05D004733 ORTHO05D005925 0.0e+00 1390.2 1063 65.7
Actinidia36563 Actinidia chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1389.8 1069 65.1
Gorai.007G203100 Gossypium raimondii HOM05D004733 ORTHO05D005925 0.0e+00 1388.2 1066 65.8
Glyma.11G068600 Glycine max HOM05D004733 ORTHO05D005925 0.0e+00 1384.8 1070 63.9
Glyma.01G176400 Glycine max HOM05D004733 ORTHO05D005925 0.0e+00 1378.6 1071 63.7
CARHR047390 Cardamine hirsuta HOM05D004733 ORTHO05D005925 0.0e+00 1370.9 1061 65.7
Lalb_Chr16g0377811 Lupinus albus HOM05D004733 ORTHO05D005925 0.0e+00 1369.4 1062 63.6
QL04p047829 Quercus lobata HOM05D004733 ORTHO05D005925 0.0e+00 1368.6 1092 64.5
PGR119G1063 Punica granatum HOM05D004733 ORTHO05D005925 0.0e+00 1368.2 1069 63.9
BolC3t20259H Brassica oleracea HOM05D004733 ORTHO05D005925 0.0e+00 1367.4 1059 66.1
C03p80050 Brassica napus HOM05D004733 ORTHO05D005925 0.0e+00 1365.9 1059 66.1
Lj1g0005862 Lotus japonicus HOM05D004733 ORTHO05D005925 0.0e+00 1364.7 1061 63.8
A08p22270 Brassica napus HOM05D004733 ORTHO05D005925 0.0e+00 1362.8 1059 65.9
arahy.Tifrunner.gnm1.ann1.VZ5KK1 Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1361.7 1059 64.1
BraA08t34186Z Brassica rapa HOM05D004733 ORTHO05D005925 0.0e+00 1361.3 1059 65.8
arahy.Tifrunner.gnm1.ann1.6U5FTL Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1358.6 1062 63.7
Phvul.002G030700 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 0.0e+00 1353.6 1063 63.0
arahy.Tifrunner.gnm1.ann1.VB3WEH Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1352.8 1066 63.6
Psat2g159520 Pisum sativum HOM05D004733 ORTHO05D005925 0.0e+00 1345.1 1055 63.6
FAN23G1660 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1343.9 1052 63.1
CANSAT78G0304 Cannabis sativa HOM05D004733 ORTHO05D005925 0.0e+00 1342.0 1056 63.4
COL.COLO4_08906 Corchorus olitorius HOM05D004733 ORTHO05D005925 0.0e+00 1341.6 1085 62.5
TWI77G0475 Tripterygium wilfordii HOM05D004733 ORTHO05D005925 0.0e+00 1335.9 1067 63.6
Aqoxy6G01122 Aquilegia oxysepala HOM05D004733 ORTHO05D005925 0.0e+00 1328.5 1076 61.5
Dinv39990 Davidia involucrata HOM05D004733 ORTHO05D005925 0.0e+00 1328.5 1078 63.5
Medtr5g020190 Medicago truncatula HOM05D004733 ORTHO05D005925 0.0e+00 1327.0 1061 62.3
Rhsim02G0060300 Rhododendron simsii HOM05D004733 ORTHO05D005925 0.0e+00 1326.6 1158 59.4
VMungo1215G0507 Vigna mungo HOM05D004733 ORTHO05D005925 0.0e+00 1326.6 1065 61.5
Sed0013525 Sechium edule HOM05D004733 ORTHO05D005925 0.0e+00 1307.0 1063 62.5
MELO3C022270.2 Cucumis melo HOM05D004733 ORTHO05D005925 0.0e+00 1299.6 1072 61.7
CsaV3_5G036970 Cucumis sativus L. HOM05D004733 ORTHO05D005925 0.0e+00 1299.6 1071 62.0
CsaV3_6G008550 Cucumis sativus L. HOM05D004733 ORTHO05D005925 0.0e+00 1298.9 1061 62.1
Lj4A201T52 Lonicera japonica HOM05D004733 ORTHO05D005925 0.0e+00 1295.0 1102 58.4
ClCG06G002580 Citrullus lanatus HOM05D004733 ORTHO05D005925 0.0e+00 1288.9 1077 61.1
PSO675G5282 Papaver somniferum HOM05D004733 ORTHO05D005925 0.0e+00 1286.2 1076 60.0
PSO541G3573 Papaver somniferum HOM05D004733 ORTHO05D005925 0.0e+00 1285.4 1076 60.0
Cc03_g11520 Coffea canephora HOM05D004733 ORTHO05D005925 0.0e+00 1281.2 1066 60.2
Sc03g0003000 Simmondsia chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1281.2 1029 61.9
FAN28G2014 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1279.6 1057 61.5
AUR62004057 Chenopodium quinoa HOM05D004733 ORTHO05D005925 0.0e+00 1268.8 1064 60.5
Migut.H00986 Erythranthe guttata HOM05D004733 ORTHO05D005925 0.0e+00 1268.1 1064 59.3
EL10Ac6g15557 Beta vulgaris HOM05D004733 ORTHO05D005925 0.0e+00 1263.8 1097 59.3
Ca_24849_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 0.0e+00 1262.7 1063 60.5
Oeu017201.1 Olea europaea HOM05D004733 ORTHO05D005925 0.0e+00 1260.0 1110 58.3
Hund16432 Selenicereus undatus HOM05D004733 ORTHO05D005925 0.0e+00 1259.2 1105 59.2
AUR62007571 Chenopodium quinoa HOM05D004733 ORTHO05D005925 0.0e+00 1257.3 1084 58.9
Hma1.2p1_0789F.1_g218380 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 0.0e+00 1256.5 1073 60.8
BcaC01g00457 Brassica carinata HOM05D004733 ORTHO05D005925 0.0e+00 1255.4 1058 62.0
Ah.03g140900 Amaranthus hybridus HOM05D004733 ORTHO05D005925 0.0e+00 1243.4 1068 58.8
Sabra07G0021700 Salix brachista HOM05D004733 ORTHO05D005925 0.0e+00 1239.9 1117 58.6
MSTRG.23523 Avicennia marina HOM05D004733 ORTHO05D005925 0.0e+00 1236.5 1064 58.3
SalBow2G0826 Salvia bowleyana HOM05D004733 ORTHO05D005925 0.0e+00 1233.4 1066 58.3
TAR625G0290 Trochodendron aralioides HOM05D004733 ORTHO05D005925 0.0e+00 1188.7 1046 58.9
Solyc02g085230.3 Solanum lycopersicum HOM05D004733 ORTHO05D005925 0.0e+00 1172.9 1060 56.4
Sopen02g029930 Solanum pennellii HOM05D004733 ORTHO05D005925 0.0e+00 1169.1 1060 56.2
HanXRQChr09g0261511 Helianthus annuus HOM05D004733 ORTHO05D005925 0.0e+00 1164.8 1068 55.2
vmacro15553 Vaccinium macrocarpon HOM05D004733 ORTHO05D005925 0.0e+00 1148.3 1179 52.7
ECA232G2226 Erigeron canadensis HOM05D004733 ORTHO05D005925 0.0e+00 1146.3 1051 54.7
Peaxi162Scf00366g00125 Petunia axillaris HOM05D004733 ORTHO05D005925 0.0e+00 1141.3 1044 56.1
Nitab4.5_0001385g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 0.0e+00 1137.5 1065 55.3
Lsat_1_v5_gn_4_152020 Lactuca sativa HOM05D004733 ORTHO05D005925 0.0e+00 1127.1 1066 54.5
Eucgr.I02440 Eucalyptus grandis HOM05D004733 ORTHO05D005925 0.0e+00 1117.8 868 65.0
ATR0665G204 Amborella trichopoda HOM05D004733 ORTHO05D005925 0.0e+00 1116.3 1061 53.4
Nitab4.5_0000178g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 0.0e+00 1085.9 1142 50.7
Zm00001eb139270 Zea mays HOM05D004733 ORTHO05D005925 0.0e+00 1078.5 1072 51.5
CDE02G4373 Ceratophyllum demersum HOM05D004733 ORTHO05D005925 1.2e-309 1066.6 1045 53.8
MBI14_g08060_MAGBIO Magnolia biondii HOM05D004733 ORTHO05D005925 6.7e-305 1050.8 842 60.9
DCAR_017293 Daucus carota HOM05D004733 ORTHO05D005925 9.1e-286 987.3 1062 51.4
SEGI_35015 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 4.5e-285 984.9 1040 49.2
A05p29760 Brassica napus HOM05D004733 ORTHO05D005925 3.6e-274 948.7 909 56.1
Haze_15084 Corylus avellana HOM05D004733 ORTHO05D005925 6.5e-268 927.9 859 57.4
unitig_21.g20953 Utricularia gibba HOM05D004733 ORTHO05D005925 1.6e-250 870.2 1030 46.5
TPR.G22288 Trifolium pratense HOM05D004733 ORTHO05D005925 8.3e-247 857.8 689 63.0
Pp3c6_25920 Physcomitrium patens HOM05D004733 ORTHO05D005925 2.4e-225 786.6 1080 41.6
A05p29530 Brassica napus HOM05D004733 ORTHO05D005925 2.8e-218 763.1 735 56.2
Hma1.2p1_0789F.1_g218390 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 1.4e-209 734.2 510 69.0
BcaNung05455 Brassica carinata HOM05D004733 ORTHO05D005925 6.4e-207 725.3 513 69.0
CAN.G358.87 Capsicum annuum HOM05D004733 ORTHO05D005925 1.3e-204 717.6 742 51.9
CAN.G3433.1 Capsicum annuum HOM05D004733 ORTHO05D005925 2.6e-200 703.4 714 52.4
HPP92_009474 Vanilla planifolia HOM05D004733 ORTHO05D005925 4.6e-197 692.6 834 46.6
SEGI_33720 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 3.9e-196 689.5 746 48.0
SGA_v2.0_scaffold54G19532 Striga asiatica HOM05D004733 ORTHO05D005925 1.3e-194 684.5 675 52.0
Mapoly0060s0020 Marchantia polymorpha HOM05D004733 ORTHO05D005925 4.6e-189 666.0 849 43.1
Aa31LG3G3780 Aethionema arabicum HOM05D004733 ORTHO05D005925 2.5e-187 660.2 512 63.9
SHI09115 Sapria himalayana HOM05D004733 ORTHO05D005925 2.5e-182 643.7 595 55.6
MD15G1261100 Malus domestica HOM05D004733 ORTHO05D005925 2.7e-181 640.2 574 58.7
QL06p046231 Quercus lobata HOM05D004733 ORTHO05D005925 5.1e-172 609.4 499 62.1
CBR_g37736 Chara braunii HOM05D004733 ORTHO05D000048 2.9e-167 593.6 1006 36.0
SMO347G0575 Selaginella moellendorffii HOM05D004733 ORTHO05D005925 1.8e-164 584.3 1060 36.4
QL02p065465 Quercus lobata HOM05D004733 ORTHO05D005925 6.5e-159 565.8 500 59.6
AagrBONN_evm.TU.Sc2ySwM_228.918 Anthoceros agrestis HOM05D004733 ORTHO05D005925 5.5e-158 562.8 873 36.1
RcHm_v2.0_Chr2g0101471 Rosa chinensis HOM05D004733 ORTHO05D005925 7.8e-136 489.2 377 64.5
Os12g0166500 Oryza sativa ssp. japonica HOM05D004733 ORTHO05D005925 3.5e-128 463.8 450 51.3
TPR.G8389 Trifolium pratense HOM05D004733 ORTHO05D005925 2.6e-123 447.6 341 63.0
Aa31LG3G3760 Aethionema arabicum HOM05D004733 ORTHO05D005925 4.4e-115 420.2 350 61.4
CAN.G358.91 Capsicum annuum HOM05D004733 ORTHO05D005925 1.2e-107 395.6 349 56.4
MCO15G114 Micromonas commoda HOM05D004733 ORTHO05D005925 1.5e-102 378.6 861 32.4
Cre07.g332800 Chlamydomonas reinhardtii HOM05D004733 ORTHO05D005925 9.0e-84 316.2 1026 28.5
Actinidia12125 Actinidia chinensis HOM05D004733 ORTHO05D005925 1.5e-78 298.9 221 68.3
Hma1.2p1_0400F.1_g144360 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 6.1e-72 276.9 232 62.1
Ca_24844_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 1.8e-71 275.4 288 49.7
C07p61790 Brassica napus HOM05D004733 ORTHO05D005925 2.5e-70 271.6 404 43.1
arahy.Tifrunner.gnm1.ann1.T3TR42 Arachis hypogaea HOM05D004733 ORTHO05D005925 4.5e-67 260.8 499 34.3
Cfa025732 Carpinus fangiana HOM05D004733 ORTHO05D005925 2.2e-66 258.5 930 26.3
GSVIVG01024291001 Vitis vinifera HOM05D004733 ORTHO05D005925 2.9e-66 258.1 177 68.9
arahy.Tifrunner.gnm1.ann1.VLQ9MW Arachis hypogaea HOM05D004733 ORTHO05D005925 1.9e-65 255.4 365 43.0
PRCOL_00003562 Prasinoderma coloniale HOM05D004733 ORTHO05D005925 1.0e-55 223.0 941 25.9
Phvul.011G118815 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 3.0e-55 221.5 154 62.3
CAN.G358.90 Capsicum annuum HOM05D004733 ORTHO05D005925 5.7e-54 217.2 197 54.3
Thhalv10021392m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 3.1e-52 211.5 274 46.0
HPP92_009475 Vanilla planifolia HOM05D004733 ORTHO05D005925 1.3e-50 206.1 186 53.8
A05p29770 Brassica napus HOM05D004733 ORTHO05D005925 1.6e-48 199.1 268 44.8
C07p61800 Brassica napus HOM05D004733 ORTHO05D005925 1.2e-46 193.0 287 41.5
A05p29560 Brassica napus HOM05D004733 ORTHO05D005925 4.0e-39 167.9 175 53.7
AagrBONN_evm.TU.Sc2ySwM_228.917 Anthoceros agrestis HOM05D004733 ORTHO05D005925 1.2e-38 166.4 193 48.2
QL02p065474 Quercus lobata HOM05D004733 ORTHO05D005925 5.0e-34 151.0 88 80.7
Aa31LG3G3770 Aethionema arabicum HOM05D004733 ORTHO05D005925 1.5e-30 139.4 127 60.6
TPR.G23227 Trifolium pratense HOM05D004733 ORTHO05D006027 2.6e-30 138.7 86 76.7
QL06p046242 Quercus lobata HOM05D004733 ORTHO05D005925 1.8e-28 132.5 100 63.0
QL06p046224 Quercus lobata HOM05D004733 ORTHO05D005925 2.9e-26 125.2 105 61.0
Haze_15083 Corylus avellana HOM05D004733 ORTHO05D005925 9.5e-25 120.2 107 59.8
RcHm_v2.0_Chr5g0064711 Rosa chinensis HOM05D004733 ORTHO05D005925 9.5e-25 120.2 164 39.0
TPR.G36480 Trifolium pratense HOM05D004733 ORTHO05D008348 3.2e-20 105.1 79 63.3
Medtr1g110810 Medicago truncatula HOM05D004733 ORTHO05D005925 8.6e-18 97.1 111 47.7
arahy.Tifrunner.gnm1.ann1.1JA7FP Arachis hypogaea HOM05D004733 ORTHO05D005925 2.5e-17 95.5 70 64.3
C05p48270 Brassica napus HOM05D004733 ORTHO05D005925 4.7e-16 91.3 104 48.1
Psat4g132320 Pisum sativum HOM05D004733 ORTHO05D010533 8.9e-15 87.0 128 40.6
Cc03_g11510 Coffea canephora HOM05D004733 ORTHO05D005925 1.5e-14 86.3 84 48.8
Phvul.011G118830 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 3.2e-12 78.6 121 41.3
A05p29540 Brassica napus HOM05D004733 ORTHO05D005925 2.7e-11 75.5 83 50.6
Psat2g060920 Pisum sativum HOM05D001085 ORTHO05D000895 1.3e-10 73.2 56 62.5
Psat0s2980g0040 Pisum sativum HOM05D000709 ORTHO05D002401 1.4e-07 63.2 77 54.5
Lj1g0009863 Lotus japonicus HOM05D004733 ORTHO05D001264 3.4e-06 58.5 47 59.6


User provided reference genes

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