Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc59.94 Carica papaya HOM05D004941 ORTHO05D005624 1.4e-84 316.2 155 100.0
TWI09G1152 Tripterygium wilfordii HOM05D004941 ORTHO05D005624 1.3e-79 299.7 149 95.3
TWI73G0643 Tripterygium wilfordii HOM05D004941 ORTHO05D005624 2.3e-79 298.9 149 94.6
FvH4_4g05880 Fragaria vesca HOM05D004941 ORTHO05D005624 5.0e-79 297.7 149 95.3
FAN12G1018 Fragaria x ananassa HOM05D004941 ORTHO05D005624 5.0e-79 297.7 149 95.3
FAN17G1669 Fragaria x ananassa HOM05D004941 ORTHO05D005624 1.1e-78 296.6 149 94.6
FAN22G1917 Fragaria x ananassa HOM05D004941 ORTHO05D005624 1.1e-78 296.6 149 94.6
Prupe.1G061100 Prunus persica HOM05D004941 ORTHO05D005624 1.9e-78 295.8 149 94.0
FAN07G0685 Fragaria x ananassa HOM05D004941 ORTHO05D005624 2.5e-78 295.4 149 94.6
Gohir.A09G052900 Gossypium hirsutum HOM05D004941 ORTHO05D005624 2.5e-78 295.4 149 94.0
Gorai.006G055700 Gossypium raimondii HOM05D004941 ORTHO05D005624 2.5e-78 295.4 149 94.0
Manes.03G152200 Manihot esculenta HOM05D004941 ORTHO05D005624 2.5e-78 295.4 149 94.6
Manes.15G050400 Manihot esculenta HOM05D004941 ORTHO05D005624 2.5e-78 295.4 149 94.0
GSVIVG01029054001 Vitis vinifera HOM05D004941 ORTHO05D005624 2.5e-78 295.4 149 94.6
Gohir.D09G052984 Gossypium hirsutum HOM05D004941 ORTHO05D005624 3.3e-78 295.0 149 93.3
PGR142G1301 Punica granatum HOM05D004941 ORTHO05D005624 3.3e-78 295.0 149 94.6
COL.COLO4_34078 Corchorus olitorius HOM05D004941 ORTHO05D005624 4.3e-78 294.7 149 94.6
RcHm_v2.0_Chr4g0396981 Rosa chinensis HOM05D004941 ORTHO05D005624 4.3e-78 294.7 149 94.0
Sabra01G0036700 Salix brachista HOM05D004941 ORTHO05D005624 4.3e-78 294.7 149 94.0
TAR636G2508 Trochodendron aralioides HOM05D004941 ORTHO05D005624 4.3e-78 294.7 149 94.6
MD16G1235900 Malus domestica HOM05D004941 ORTHO05D005624 5.6e-78 294.3 149 94.0
Potri.001G052100 Populus trichocarpa HOM05D004941 ORTHO05D005624 5.6e-78 294.3 149 93.3
CsaV3_3G011260 Cucumis sativus L. HOM05D004941 ORTHO05D005624 7.3e-78 293.9 149 93.3
Thecc.04G211200 Theobroma cacao HOM05D004941 ORTHO05D005624 1.2e-77 293.1 149 92.6
MELO3C006336.2 Cucumis melo HOM05D004941 ORTHO05D005624 1.6e-77 292.7 149 92.6
PGR083G0368 Punica granatum HOM05D004941 ORTHO05D005624 1.6e-77 292.7 149 93.3
CSS0021875 Camellia sinensis var. sinensis HOM05D004941 ORTHO05D005624 2.1e-77 292.4 149 93.3
Ciclev10005408m.g Citrus clementina HOM05D004941 ORTHO05D005624 2.8e-77 292.0 149 93.3
ClCG05G003570 Citrullus lanatus HOM05D004941 ORTHO05D005624 4.7e-77 291.2 149 91.9
Duzib212G1033 Durio zibethinus HOM05D004941 ORTHO05D005624 4.7e-77 291.2 149 93.3
Eucgr.H00092 Eucalyptus grandis HOM05D004941 ORTHO05D005624 4.7e-77 291.2 149 91.9
Sed0000115 Sechium edule HOM05D004941 ORTHO05D005624 4.7e-77 291.2 149 93.3
CANSAT78G1419 Cannabis sativa HOM05D004941 ORTHO05D005624 6.1e-77 290.8 149 91.3
TAR365G1102 Trochodendron aralioides HOM05D004941 ORTHO05D005624 6.1e-77 290.8 149 91.9
Duzib151G0226 Durio zibethinus HOM05D004941 ORTHO05D005624 1.0e-76 290.0 149 92.6
Nn1g03138 Nelumbo nucifera HOM05D004941 ORTHO05D005624 1.0e-76 290.0 149 94.0
CiPaw.02G068500 Carya illinoinensis HOM05D004941 ORTHO05D005624 1.4e-76 289.7 149 93.3
Atru.chr4.1786 Acer truncatum HOM05D004941 ORTHO05D005624 1.8e-76 289.3 149 91.3
SGA_v2.0_scaffold57G20152 Striga asiatica HOM05D004941 ORTHO05D005624 2.3e-76 288.9 149 91.3
Duzib212G0897 Durio zibethinus HOM05D004941 ORTHO05D005624 3.1e-76 288.5 149 92.6
CAN.G706.24 Capsicum annuum HOM05D004941 ORTHO05D005624 5.2e-76 287.7 149 91.9
Phvul.007G236700 Phaseolus vulgaris HOM05D004941 ORTHO05D005624 5.2e-76 287.7 149 92.6
Actinidia35949 Actinidia chinensis HOM05D004941 ORTHO05D005624 6.8e-76 287.3 149 91.9
Nn3g19897 Nelumbo nucifera HOM05D004941 ORTHO05D005624 6.8e-76 287.3 149 91.9
arahy.Tifrunner.gnm1.ann1.9BGX48 Arachis hypogaea HOM05D004941 ORTHO05D005624 8.9e-76 287.0 154 90.3
Solyc12g098150.2 Solanum lycopersicum HOM05D004941 ORTHO05D005624 8.9e-76 287.0 149 91.9
Sopen12g032980 Solanum pennellii HOM05D004941 ORTHO05D005624 8.9e-76 287.0 149 91.9
SGA_v2.0_scaffold155G37216 Striga asiatica HOM05D004941 ORTHO05D005624 8.9e-76 287.0 149 91.3
TAR362G1130 Trochodendron aralioides HOM05D004941 ORTHO05D005624 1.2e-75 286.6 149 93.3
Oeu022332.1 Olea europaea HOM05D004941 ORTHO05D005624 1.5e-75 286.2 149 90.6
PGSC0003DMG400016870 Solanum tuberosum HOM05D004941 ORTHO05D005624 2.0e-75 285.8 149 91.3
CiPaw.01G126200 Carya illinoinensis HOM05D004941 ORTHO05D005624 2.6e-75 285.4 149 91.3
Dinv29557 Davidia involucrata HOM05D004941 ORTHO05D005624 2.6e-75 285.4 149 90.6
QL06p023335 Quercus lobata HOM05D004941 ORTHO05D005624 2.6e-75 285.4 149 91.9
THA.LOC104826109 Tarenaya hassleriana HOM05D004941 ORTHO05D005624 3.4e-75 285.0 149 89.9
Cfa021915 Carpinus fangiana HOM05D004941 ORTHO05D005624 4.4e-75 284.6 149 91.3
arahy.Tifrunner.gnm1.ann1.4W8SKF Arachis hypogaea HOM05D004941 ORTHO05D005624 5.8e-75 284.3 149 91.9
C05p02890 Brassica napus HOM05D004941 ORTHO05D005624 5.8e-75 284.3 149 89.9
BolC5t29070H Brassica oleracea HOM05D004941 ORTHO05D005624 5.8e-75 284.3 149 89.9
Nitab4.5_0009699g0010 Nicotiana tabacum HOM05D004941 ORTHO05D005624 5.8e-75 284.3 149 90.6
THA.LOC104801049 Tarenaya hassleriana HOM05D004941 ORTHO05D005624 5.8e-75 284.3 149 90.6
ATR0787G155 Amborella trichopoda HOM05D004941 ORTHO05D005624 7.5e-75 283.9 149 89.3
A10p03120 Brassica napus HOM05D004941 ORTHO05D005624 7.5e-75 283.9 149 89.3
BraA10t42585Z Brassica rapa HOM05D004941 ORTHO05D005624 7.5e-75 283.9 149 89.3
Migut.G00623 Erythranthe guttata HOM05D004941 ORTHO05D005624 7.5e-75 283.9 149 89.3
Lj6g0004918 Lotus japonicus HOM05D004941 ORTHO05D005624 7.5e-75 283.9 149 91.3
Medtr1g047250 Medicago truncatula HOM05D004941 ORTHO05D005624 7.5e-75 283.9 149 91.3
Psat6g047760 Pisum sativum HOM05D004941 ORTHO05D005624 7.5e-75 283.9 149 91.9
Dinv38278 Davidia involucrata HOM05D004941 ORTHO05D005624 9.8e-75 283.5 149 90.6
Peaxi162Scf00817g00217 Petunia axillaris HOM05D004941 ORTHO05D005624 9.8e-75 283.5 149 90.6
AUR62020272 Chenopodium quinoa HOM05D004941 ORTHO05D005624 1.3e-74 283.1 149 91.3
AUR62037730 Chenopodium quinoa HOM05D004941 ORTHO05D005624 1.3e-74 283.1 149 91.3
CDE06G1864 Ceratophyllum demersum HOM05D004941 ORTHO05D005624 1.7e-74 282.7 149 88.6
HPP92_020758 Vanilla planifolia HOM05D004941 ORTHO05D005624 1.7e-74 282.7 150 88.7
Hund25548 Selenicereus undatus HOM05D004941 ORTHO05D005624 2.2e-74 282.3 149 90.6
BcaC07g36888 Brassica carinata HOM05D004941 ORTHO05D005624 2.9e-74 282.0 149 88.6
A08p36750 Brassica napus HOM05D004941 ORTHO05D005624 2.9e-74 282.0 149 88.6
C08p01390 Brassica napus HOM05D004941 ORTHO05D005624 2.9e-74 282.0 149 88.6
BolC8t46947H Brassica oleracea HOM05D004941 ORTHO05D005624 2.9e-74 282.0 149 88.6
BraA08t35577Z Brassica rapa HOM05D004941 ORTHO05D005624 2.9e-74 282.0 149 88.6
Glyma.20G077200 Glycine max HOM05D004941 ORTHO05D005624 2.9e-74 282.0 149 90.6
Sp1g03530 Schrenkiella parvula HOM05D004941 ORTHO05D005624 2.9e-74 282.0 149 88.6
VMungo0720G0486 Vigna mungo HOM05D004941 ORTHO05D005624 2.9e-74 282.0 149 89.9
Ah.12g061340 Amaranthus hybridus HOM05D004941 ORTHO05D005624 3.7e-74 281.6 149 89.9
Glyma.10G124800 Glycine max HOM05D004941 ORTHO05D005624 3.7e-74 281.6 149 90.6
MD13G1231200 Malus domestica HOM05D004941 ORTHO05D005624 4.9e-74 281.2 149 89.3
BcaB03g13476 Brassica carinata HOM05D004941 ORTHO05D005624 6.4e-74 280.8 149 87.9
Carub.0001s0394 Capsella rubella HOM05D004941 ORTHO05D005624 6.4e-74 280.8 149 87.9
CARHR004070 Cardamine hirsuta HOM05D004941 ORTHO05D005624 6.4e-74 280.8 149 87.9
Thhalv10008181m.g Eutrema salsugineum HOM05D004941 ORTHO05D005624 6.4e-74 280.8 149 87.9
SalBow2G0113 Salvia bowleyana HOM05D004941 ORTHO05D005624 8.3e-74 280.4 149 88.6
AL1G14400 Arabidopsis lyrata HOM05D004941 ORTHO05D005624 1.4e-73 279.6 149 87.2
AT1G04690 Arabidopsis thaliana HOM05D004941 ORTHO05D005624 1.4e-73 279.6 149 87.2
MSTRG.4206 Avicennia marina HOM05D004941 ORTHO05D005624 1.4e-73 279.6 149 87.2
MSTRG.9834 Avicennia marina HOM05D004941 ORTHO05D005624 1.4e-73 279.6 149 89.3
Aqoxy2G03791 Aquilegia oxysepala HOM05D004941 ORTHO05D005624 2.4e-73 278.9 149 87.9
EL10Ac2g02402 Beta vulgaris HOM05D004941 ORTHO05D005624 2.4e-73 278.9 149 89.3
MBI07_g19562_MAGBIO Magnolia biondii HOM05D004941 ORTHO05D005624 2.4e-73 278.9 149 88.6
TPR.G10093 Trifolium pratense HOM05D004941 ORTHO05D005624 3.2e-73 278.5 149 87.9
Aa31LG1G20190 Aethionema arabicum HOM05D004941 ORTHO05D005624 9.2e-73 276.9 149 88.6
PSO170G0276 Papaver somniferum HOM05D004941 ORTHO05D005624 9.2e-73 276.9 150 87.3
PSO764G0052 Papaver somniferum HOM05D004941 ORTHO05D005624 9.2e-73 276.9 150 87.3
Lalb_Chr01g0010801 Lupinus albus HOM05D004941 ORTHO05D005624 1.2e-72 276.6 149 88.6
Lalb_Chr03g0036651 Lupinus albus HOM05D004941 ORTHO05D005624 1.6e-72 276.2 149 89.3
Zm00001eb258940 Zea mays HOM05D004941 ORTHO05D005624 2.0e-72 275.8 150 86.7
Lj3A584G54 Lonicera japonica HOM05D004941 ORTHO05D005624 4.6e-72 274.6 149 85.9
Os02g0817500 Oryza sativa ssp. japonica HOM05D004941 ORTHO05D005624 1.3e-71 273.1 150 87.3
DCAR_024319 Daucus carota HOM05D004941 ORTHO05D005624 1.7e-71 272.7 149 87.2
Zm00001eb191380 Zea mays HOM05D004941 ORTHO05D005624 1.7e-71 272.7 154 84.4
SEGI_23376 Sequoiadendron giganteum HOM05D004941 ORTHO05D005624 2.3e-71 272.3 149 86.6
THA.LOC104816018 Tarenaya hassleriana HOM05D004941 ORTHO05D005624 1.5e-70 269.6 149 86.6
HanXRQChr11g0342701 Helianthus annuus HOM05D004941 ORTHO05D005624 1.9e-70 269.2 149 86.6
DCAR_027374 Daucus carota HOM05D004941 ORTHO05D005624 5.6e-70 267.7 149 83.9
HanXRQChr14g0435051 Helianthus annuus HOM05D004941 ORTHO05D005624 2.8e-69 265.4 149 85.2
Cc03_g07250 Coffea canephora HOM05D004941 ORTHO05D005624 3.6e-69 265.0 150 86.7
Lsat_1_v5_gn_2_43301 Lactuca sativa HOM05D004941 ORTHO05D005624 4.7e-69 264.6 149 85.9
Lsat_1_v5_gn_1_72461 Lactuca sativa HOM05D004941 ORTHO05D005624 1.4e-68 263.1 169 78.1
CiPaw.01G126300 Carya illinoinensis HOM05D004941 ORTHO05D005624 3.1e-68 261.9 149 83.9
ECA238G2545 Erigeron canadensis HOM05D004941 ORTHO05D005624 4.0e-68 261.5 150 83.3
Oeu006717.1 Olea europaea HOM05D004941 ORTHO05D005624 9.8e-67 256.9 203 65.5
Mapoly0072s0010 Marchantia polymorpha HOM05D004941 ORTHO05D005624 1.4e-65 253.1 150 78.7
Haze_11557 Corylus avellana HOM05D004941 ORTHO05D005624 5.4e-65 251.1 171 76.0
SMO119G0453 Selaginella moellendorffii HOM05D004941 ORTHO05D005624 9.2e-65 250.4 150 80.7
Nitab4.5_0005337g0010 Nicotiana tabacum HOM05D004941 ORTHO05D005624 2.7e-64 248.8 149 81.9
vmacro15503 Vaccinium macrocarpon HOM05D004941 ORTHO05D005624 2.8e-61 238.8 217 60.8
Lj6C612G1 Lonicera japonica HOM05D004941 ORTHO05D005624 2.9e-58 228.8 149 76.5
Pp3c15_3990 Physcomitrium patens HOM05D004941 ORTHO05D005624 8.3e-58 227.3 150 72.7
Pp3c9_7970 Physcomitrium patens HOM05D004941 ORTHO05D005624 2.7e-56 222.2 150 68.7
Actinidia34635 Actinidia chinensis HOM05D004941 ORTHO05D005624 3.0e-55 218.8 120 88.3
unitig_748.g7345 Utricularia gibba HOM05D004941 ORTHO05D005624 8.6e-55 217.2 175 65.1
Oeu001462.1 Olea europaea HOM05D004941 ORTHO05D005624 4.0e-52 208.4 170 65.9
CBR_g12335 Chara braunii HOM05D004941 ORTHO05D005624 1.7e-50 203.0 150 66.7
unitig_32.g11683 Utricularia gibba HOM05D004941 ORTHO05D005624 7.8e-48 194.1 163 64.4
CSS0034559 Camellia sinensis var. sinensis HOM05D004941 ORTHO05D005624 3.9e-47 191.8 106 87.7
Sc04g0003020 Simmondsia chinensis HOM05D004941 ORTHO05D005624 6.6e-47 191.0 93 92.5
Cre04.g217916 Chlamydomonas reinhardtii HOM05D000352 ORTHO05D005624 9.6e-38 160.6 155 55.5
CSS0035383 Camellia sinensis var. sinensis HOM05D004941 ORTHO05D005624 4.5e-35 151.8 135 62.2
Hma1.2p1_0903F.1_g235180 Hydrangea macrophylla HOM05D004941 ORTHO05D005624 3.8e-34 148.7 183 46.4
HanXRQChr12g0368351 Helianthus annuus HOM05D004941 ORTHO05D005624 7.9e-32 141.0 89 78.7
HanXRQChr12g0368381 Helianthus annuus HOM05D004941 ORTHO05D005624 1.1e-30 137.1 89 75.3
Cfa022423 Carpinus fangiana HOM05D004941 ORTHO05D005624 2.7e-24 115.9 86 61.6
Cpa.g.c36552 Carica papaya HOM05D004941 ORTHO05D005624 8.7e-23 110.9 56 98.2
BcaC05g28675 Brassica carinata HOM05D003918 ORTHO05D004494 1.1e-22 110.5 110 59.1
Pp3s30_128 Physcomitrium patens HOM05D000352 ORTHO05D006304 3.8e-18 95.5 146 38.4
Ca_11856_v3 Cicer arietinum L. HOM05D004941 ORTHO05D005624 5.0e-18 95.1 45 93.3
CAN.G201.33 Capsicum annuum HOM05D008510 ORTHO05D010996 1.6e-16 90.1 118 44.9
COL.COLO4_34077 Corchorus olitorius HOM05D004941 ORTHO05D005624 3.9e-15 85.5 43 93.0
CBR_g12488 Chara braunii HOM05D000019 ORTHO05D000002 7.4e-14 81.3 146 34.2
Ca_28893_v3 Cicer arietinum L. HOM05D000352 ORTHO05D005624 4.8e-13 78.6 150 36.7
CAN.G896.2 Capsicum annuum HOM05D008510 ORTHO05D010996 6.3e-13 78.2 77 49.4
MCO11G017 Micromonas commoda HOM05D002663 ORTHO05D002988 6.9e-12 74.7 146 33.6
Pp3s32_220 Physcomitrium patens HOM05D000352 ORTHO05D312377 3.4e-11 72.4 147 33.3
Atru.chr4.1784 Acer truncatum HOM05D004941 ORTHO05D005624 4.5e-11 72.0 39 87.2
SEGI_00402 Sequoiadendron giganteum HOM05D004941 ORTHO05D005624 1.0e-10 70.9 46 67.4
SMO134G0117 Selaginella moellendorffii HOM05D002663 ORTHO05D002988 3.6e-08 62.4 147 32.0
Cre17.g699900 Chlamydomonas reinhardtii HOM05D002663 ORTHO05D002988 1.0e-07 60.8 147 32.0
Cre10.g461900 Chlamydomonas reinhardtii HOM05D002663 ORTHO05D002988 1.4e-07 60.5 150 31.3
Atru.chr4.1785 Acer truncatum HOM05D004941 ORTHO05D005624 1.8e-07 60.1 31 83.9
Lj3C898T8 Lonicera japonica HOM05D002607 ORTHO05D008816 1.8e-07 60.1 126 28.6
HPP92_008955 Vanilla planifolia HOM05D002663 ORTHO05D002988 5.1e-07 58.5 158 34.2
Ca_29453_v3 Cicer arietinum L. HOM05D000352 ORTHO05D006304 2.0e-06 56.6 149 29.5
Pp3c12_10890 Physcomitrium patens HOM05D002663 ORTHO05D002988 2.5e-06 56.2 153 30.7
Eucgr.H04376 Eucalyptus grandis HOM05D000352 ORTHO05D000260 3.3e-06 55.8 153 34.6
Psat7g065720 Pisum sativum HOM05D002663 ORTHO05D002988 3.3e-06 55.8 151 32.5
TWI56G0786 Tripterygium wilfordii HOM05D000352 ORTHO05D000260 3.3e-06 55.8 146 30.8
Aa31LG3G9760 Aethionema arabicum HOM05D002607 ORTHO05D008816 4.3e-06 55.5 132 28.8
Cc02_g30560 Coffea canephora HOM05D000352 ORTHO05D000260 4.3e-06 55.5 152 33.6
Lsat_1_v5_gn_8_61000 Lactuca sativa HOM05D002607 ORTHO05D006782 4.3e-06 55.5 143 28.0
Ciclev10005337m.g Citrus clementina HOM05D000352 ORTHO05D000260 5.7e-06 55.1 149 31.5
HanXRQChr04g0102791 Helianthus annuus HOM05D000352 ORTHO05D000260 5.7e-06 55.1 149 31.5
Potri.008G167400 Populus trichocarpa HOM05D002663 ORTHO05D002988 5.7e-06 55.1 157 32.5
TWI56G0549 Tripterygium wilfordii HOM05D000352 ORTHO05D000260 5.7e-06 55.1 146 30.8
HPP92_019491 Vanilla planifolia HOM05D002607 ORTHO05D006782 5.7e-06 55.1 152 28.9
ATR0487G012 Amborella trichopoda HOM05D002663 ORTHO05D002988 7.4e-06 54.7 120 35.8
SMO236G0138 Selaginella moellendorffii HOM05D002607 ORTHO05D006782 7.4e-06 54.7 116 31.0
PGSC0003DMG400016293 Solanum tuberosum HOM05D002663 ORTHO05D002988 7.4e-06 54.7 150 30.7
CAN.G374.14 Capsicum annuum HOM05D002663 ORTHO05D002988 9.7e-06 54.3 150 29.3
Nitab4.5_0000302g0180 Nicotiana tabacum HOM05D002663 ORTHO05D002988 9.7e-06 54.3 150 30.7
Nitab4.5_0005627g0010 Nicotiana tabacum HOM05D002663 ORTHO05D002988 9.7e-06 54.3 150 30.7
PGR004G1088 Punica granatum HOM05D002663 ORTHO05D002988 9.7e-06 54.3 150 31.3


User provided reference genes

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