Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc59.56 Carica papaya HOM05D003628 ORTHO05D004253 4.2e-145 518.1 274 100.0
Atru.chr4.1847 Acer truncatum HOM05D003628 ORTHO05D004253 5.5e-36 155.6 127 71.7
Ciclev10004333m.g Citrus clementina HOM05D003628 ORTHO05D004253 9.3e-36 154.8 162 62.3
Dinv29776 Davidia involucrata HOM05D003628 ORTHO05D004253 1.6e-35 154.1 134 67.9
QL06p022355 Quercus lobata HOM05D003628 ORTHO05D004253 3.9e-34 149.4 129 70.5
Sabra08G0133300 Salix brachista HOM05D003628 ORTHO05D004253 3.9e-34 149.4 179 55.3
Dinv27142 Davidia involucrata HOM05D003628 ORTHO05D004253 5.1e-34 149.1 134 65.7
TWI09G0941 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 9.6e-33 144.8 129 69.8
Cfa014840 Carpinus fangiana HOM05D003628 ORTHO05D004253 1.3e-32 144.4 129 68.2
Potri.010G062000 Populus trichocarpa HOM05D003628 ORTHO05D004253 1.3e-32 144.4 128 65.6
ClCG06G007410 Citrullus lanatus HOM05D003628 ORTHO05D004253 1.6e-32 144.1 161 56.5
Aa31LG8G10920 Aethionema arabicum HOM05D003628 ORTHO05D004253 2.1e-32 143.7 190 52.1
CiPaw.01G174500 Carya illinoinensis HOM05D003628 ORTHO05D004253 3.7e-32 142.9 129 67.4
Haze_11526 Corylus avellana HOM05D003628 ORTHO05D004253 4.8e-32 142.5 120 70.8
Sabra10G0044300 Salix brachista HOM05D006620 ORTHO05D008921 6.2e-32 142.1 218 45.9
Sp3g21980 Schrenkiella parvula HOM05D003628 ORTHO05D004253 1.1e-31 141.4 138 60.1
GSVIVG01029001001 Vitis vinifera HOM05D003628 ORTHO05D004253 2.4e-31 140.2 129 65.9
CiPaw.02G103800 Carya illinoinensis HOM05D003628 ORTHO05D004253 3.1e-31 139.8 129 67.4
Hma1.2p1_0574F.1_g181510 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 5.3e-31 139.0 141 60.3
VMungo0720G2372 Vigna mungo HOM05D003628 ORTHO05D004253 9.0e-31 138.3 155 55.5
Duzib151G0300 Durio zibethinus HOM05D003628 ORTHO05D004253 1.5e-30 137.5 135 64.4
Actinidia39943 Actinidia chinensis HOM05D003628 ORTHO05D004253 2.0e-30 137.1 131 61.1
Duzib212G0614 Durio zibethinus HOM05D003628 ORTHO05D004253 5.8e-30 135.6 135 63.0
Gohir.D02G032600 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.3e-29 134.4 135 62.2
Gorai.005G036000 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.3e-29 134.4 135 62.2
Lalb_Chr01g0011261 Lupinus albus HOM05D003628 ORTHO05D004253 1.7e-29 134.0 135 61.5
Manes.15G048200 Manihot esculenta HOM05D003628 ORTHO05D004253 2.9e-29 133.3 128 61.7
A03p43510 Brassica napus HOM05D003628 ORTHO05D004253 3.8e-29 132.9 138 59.4
Glyma.20G079600 Glycine max HOM05D003628 ORTHO05D004253 3.8e-29 132.9 139 57.6
Nitab4.5_0000451g0120 Nicotiana tabacum HOM05D003628 ORTHO05D004253 3.8e-29 132.9 99 74.7
TWI73G0229 Tripterygium wilfordii HOM05D003628 ORTHO05D004253 3.8e-29 132.9 129 66.7
BcaC06g35667 Brassica carinata HOM05D003628 ORTHO05D004253 6.5e-29 132.1 138 57.2
BraA03t13490Z Brassica rapa HOM05D003628 ORTHO05D004253 6.5e-29 132.1 135 60.7
FAN07G2212 Fragaria x ananassa HOM05D003628 ORTHO05D004253 1.1e-28 131.3 108 69.4
Hma1.2p1_1241F.1_g269760 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 1.1e-28 131.3 134 60.4
SGA_v2.0_scaffold57G20181 Striga asiatica HOM05D003628 ORTHO05D004253 1.1e-28 131.3 158 53.2
Thecc.04G217100 Theobroma cacao HOM05D003628 ORTHO05D004253 1.1e-28 131.3 135 62.2
Glyma.10G128350 Glycine max HOM05D003628 ORTHO05D004253 1.4e-28 131.0 139 57.6
Gorai.006G218800 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.4e-28 131.0 127 63.8
Sed0002438 Sechium edule HOM05D003628 ORTHO05D004253 2.5e-28 130.2 135 57.8
BcaC06g35665 Brassica carinata HOM05D003628 ORTHO05D004253 3.2e-28 129.8 138 56.5
C07p12290 Brassica napus HOM05D003628 ORTHO05D004253 3.2e-28 129.8 138 56.5
C07p12320 Brassica napus HOM05D003628 ORTHO05D004253 3.2e-28 129.8 138 56.5
Gohir.A02G025400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.2e-28 129.8 133 60.9
Gohir.A09G201200 Gossypium hirsutum HOM05D003628 ORTHO05D004253 3.2e-28 129.8 134 59.0
Oeu012942.2 Olea europaea HOM05D003628 ORTHO05D004253 3.2e-28 129.8 134 61.2
A07p08160 Brassica napus HOM05D003628 ORTHO05D004253 4.2e-28 129.4 176 47.7
BraA07t28601Z Brassica rapa HOM05D003628 ORTHO05D004253 4.2e-28 129.4 176 47.7
Gohir.D09G195400 Gossypium hirsutum HOM05D003628 ORTHO05D004253 4.2e-28 129.4 127 63.0
BcaB06g26600 Brassica carinata HOM05D003628 ORTHO05D004253 5.5e-28 129.0 135 57.8
BcaB04g20394 Brassica carinata HOM05D003628 ORTHO05D004253 7.1e-28 128.6 128 59.4
Lalb_Chr03g0036821 Lupinus albus HOM05D003628 ORTHO05D004253 7.1e-28 128.6 134 60.4
FvH4_4g05311 Fragaria vesca HOM05D003628 ORTHO05D004253 9.3e-28 128.3 107 69.2
FAN12G2520 Fragaria x ananassa HOM05D003628 ORTHO05D004253 9.3e-28 128.3 107 69.2
CsaV3_2G012280 Cucumis sativus L. HOM05D003628 ORTHO05D004253 1.2e-27 127.9 129 62.0
Phvul.007G238700 Phaseolus vulgaris HOM05D003628 ORTHO05D004253 1.6e-27 127.5 129 58.1
FAN22G0313 Fragaria x ananassa HOM05D003628 ORTHO05D004253 2.1e-27 127.1 135 57.8
CSS0021427 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 2.7e-27 126.7 134 59.0
Potri.008G174800 Populus trichocarpa HOM05D003628 ORTHO05D004253 2.7e-27 126.7 129 63.6
RcHm_v2.0_Chr4g0396341 Rosa chinensis HOM05D003628 ORTHO05D004253 2.7e-27 126.7 113 62.8
Lj6g0006649 Lotus japonicus HOM05D003628 ORTHO05D004253 4.6e-27 125.9 137 56.9
CSS0020381 Camellia sinensis var. sinensis HOM05D003628 ORTHO05D004253 6.0e-27 125.6 134 57.5
PGR142G1422 Punica granatum HOM05D003628 ORTHO05D004253 6.0e-27 125.6 129 55.8
Sed0008500 Sechium edule HOM05D003628 ORTHO05D004253 6.0e-27 125.6 134 57.5
Gohir.D10G146700 Gossypium hirsutum HOM05D003628 ORTHO05D004253 1.8e-26 124.0 137 58.4
Gorai.011G164000 Gossypium raimondii HOM05D003628 ORTHO05D004253 1.8e-26 124.0 137 58.4
MELO3C023064.2 Cucumis melo HOM05D003628 ORTHO05D004253 3.0e-26 123.2 129 60.5
Psat6g109680 Pisum sativum HOM05D003628 ORTHO05D004253 3.0e-26 123.2 133 57.9
TAR362G1171 Trochodendron aralioides HOM05D003628 ORTHO05D004253 3.0e-26 123.2 135 56.3
MSTRG.4198 Avicennia marina HOM05D003628 ORTHO05D004253 3.9e-26 122.9 134 59.7
CANSAT78G2050 Cannabis sativa HOM05D003628 ORTHO05D004253 5.1e-26 122.5 112 64.3
Ca_11787_v3 Cicer arietinum L. HOM05D003628 ORTHO05D004253 5.1e-26 122.5 141 54.6
Rhsim02G0049400 Rhododendron simsii HOM05D003628 ORTHO05D004253 5.1e-26 122.5 130 58.5
BcaB03g14597 Brassica carinata HOM05D003628 ORTHO05D004253 6.7e-26 122.1 137 54.0
Cc03_g07010 Coffea canephora HOM05D003628 ORTHO05D004253 6.7e-26 122.1 112 65.2
Migut.G00600 Erythranthe guttata HOM05D003628 ORTHO05D004253 6.7e-26 122.1 121 64.5
BolC7t41696H Brassica oleracea HOM05D003628 ORTHO05D004253 1.1e-25 121.3 117 59.8
Manes.03G155400 Manihot esculenta HOM05D003628 ORTHO05D004253 1.1e-25 121.3 128 58.6
BcaC01g03342 Brassica carinata HOM05D003628 ORTHO05D004253 1.5e-25 120.9 130 56.2
C03p53470 Brassica napus HOM05D003628 ORTHO05D004253 1.5e-25 120.9 130 56.2
BolC3t17608H Brassica oleracea HOM05D003628 ORTHO05D004253 1.5e-25 120.9 130 56.2
Lalb_Chr19g0128621 Lupinus albus HOM05D003628 ORTHO05D004253 1.9e-25 120.6 124 60.5
ECA234G0302 Erigeron canadensis HOM05D003628 ORTHO05D004253 2.5e-25 120.2 114 64.9
Prupe.1G054700 Prunus persica HOM05D003628 ORTHO05D004253 2.5e-25 120.2 144 54.2
Medtr1g046350 Medicago truncatula HOM05D003628 ORTHO05D004253 4.3e-25 119.4 133 56.4
Peaxi162Scf00047g00163 Petunia axillaris HOM05D003628 ORTHO05D004253 4.3e-25 119.4 99 69.7
TAR633G2428 Trochodendron aralioides HOM05D003628 ORTHO05D004253 4.3e-25 119.4 135 57.0
Hma1.2p1_0112F.1_g055040 Hydrangea macrophylla HOM05D003628 ORTHO05D004253 5.7e-25 119.0 159 50.3
MD16G1232700 Malus domestica HOM05D003628 ORTHO05D004253 5.7e-25 119.0 145 53.1
AUR62030025 Chenopodium quinoa HOM05D003628 ORTHO05D004253 1.3e-24 117.9 132 53.8
THA.LOC104821624 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 1.6e-24 117.5 147 52.4
THA.LOC104804570 Tarenaya hassleriana HOM05D003628 ORTHO05D004253 2.2e-24 117.1 137 53.3
TPR.G23641 Trifolium pratense HOM05D003628 ORTHO05D004253 2.2e-24 117.1 130 56.9
PSO832G4023 Papaver somniferum HOM05D003628 ORTHO05D004253 3.7e-24 116.3 137 56.9
Solyc09g091120.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 3.7e-24 116.3 98 67.3
Sopen09g034100 Solanum pennellii HOM05D003628 ORTHO05D004253 3.7e-24 116.3 98 67.3
HanXRQChr10g0311151 Helianthus annuus HOM05D003628 ORTHO05D004253 6.3e-24 115.5 144 52.1
AT3G23980 Arabidopsis thaliana HOM05D003628 ORTHO05D004253 8.2e-24 115.2 164 48.8
EL10Ac3g06305 Beta vulgaris HOM05D003628 ORTHO05D004253 8.2e-24 115.2 132 52.3
CAN.G812.46 Capsicum annuum HOM05D003628 ORTHO05D004253 1.1e-23 114.8 134 56.7
DCAR_027362 Daucus carota HOM05D003628 ORTHO05D004253 1.1e-23 114.8 142 54.9
Sopen12g032860 Solanum pennellii HOM05D003628 ORTHO05D004253 1.1e-23 114.8 106 63.2
Aqoxy1G00125 Aquilegia oxysepala HOM05D003628 ORTHO05D004253 1.4e-23 114.4 133 52.6
Nitab4.5_0002738g0080 Nicotiana tabacum HOM05D003628 ORTHO05D004253 1.4e-23 114.4 131 55.0
Peaxi162Scf01007g00014 Petunia axillaris HOM05D003628 ORTHO05D004253 1.4e-23 114.4 130 56.2
Eucgr.H00111 Eucalyptus grandis HOM05D003628 ORTHO05D004253 4.1e-23 112.8 135 54.8
Solyc12g097070.3 Solanum lycopersicum HOM05D003628 ORTHO05D004253 5.3e-23 112.5 106 62.3
PSO764G0031 Papaver somniferum HOM05D003628 ORTHO05D004253 9.0e-23 111.7 137 55.5
AUR62002607 Chenopodium quinoa HOM05D003628 ORTHO05D004253 1.2e-22 111.3 133 52.6
Hund12233 Selenicereus undatus HOM05D003628 ORTHO05D004253 1.2e-22 111.3 115 58.3
CAN.G566.2 Capsicum annuum HOM05D003628 ORTHO05D004253 1.5e-22 110.9 130 55.4
TAR365G0848 Trochodendron aralioides HOM05D003628 ORTHO05D004253 1.5e-22 110.9 108 60.2
HanXRQChr12g0359881 Helianthus annuus HOM05D003628 ORTHO05D004253 2.6e-22 110.2 119 58.0
Sc19g0002160 Simmondsia chinensis HOM05D003628 ORTHO05D004253 4.5e-22 109.4 139 54.0
arahy.Tifrunner.gnm1.ann1.STBA65 Arachis hypogaea HOM05D003628 ORTHO05D004253 5.9e-22 109.0 135 50.4
vmacro15908 Vaccinium macrocarpon HOM05D003628 ORTHO05D004253 7.6e-22 108.6 151 48.3
Ah.07g204120 Amaranthus hybridus HOM05D003628 ORTHO05D004253 1.3e-21 107.8 133 51.1
Nitab4.5_0001998g0040 Nicotiana tabacum HOM05D003628 ORTHO05D004253 1.3e-21 107.8 130 53.1
HPP92_014197 Vanilla planifolia HOM05D003628 ORTHO05D004253 1.7e-21 107.5 94 62.8
HPP92_026454 Vanilla planifolia HOM05D003628 ORTHO05D004253 1.7e-21 107.5 94 62.8
Oeu023151.1 Olea europaea HOM05D003628 ORTHO05D004253 2.9e-21 106.7 84 71.4
AL3G39530 Arabidopsis lyrata HOM05D003628 ORTHO05D004253 6.5e-21 105.5 139 48.9
Nn1g03063 Nelumbo nucifera HOM05D003628 ORTHO05D004253 1.1e-20 104.8 137 51.1
ATR0580G379 Amborella trichopoda HOM05D003628 ORTHO05D004253 4.2e-20 102.8 130 52.3
Carub.0003s2454 Capsella rubella HOM05D003628 ORTHO05D004253 4.2e-20 102.8 139 48.2
MBI05_g37047_MAGBIO Magnolia biondii HOM05D003628 ORTHO05D004253 4.2e-20 102.8 135 50.4
Lsat_1_v5_gn_5_148361 Lactuca sativa HOM05D003628 ORTHO05D004253 5.5e-20 102.4 116 55.2
Zm00001eb143670 Zea mays HOM05D003628 ORTHO05D004253 7.2e-20 102.1 136 47.8
Zm00001eb365010 Zea mays HOM05D003628 ORTHO05D004253 7.2e-20 102.1 133 48.1
arahy.Tifrunner.gnm1.ann1.7KG1FV Arachis hypogaea HOM05D003628 ORTHO05D004253 9.3e-20 101.7 137 47.4
CDE07G1740 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 9.3e-20 101.7 136 48.5
CARHR100260 Cardamine hirsuta HOM05D003628 ORTHO05D004253 2.7e-19 100.1 131 50.4
Nn3g19840 Nelumbo nucifera HOM05D003628 ORTHO05D004253 3.6e-19 99.8 130 53.8
unitig_748.g7341 Utricularia gibba HOM05D003628 ORTHO05D004253 1.8e-18 97.4 136 47.1
Os01g0911800 Oryza sativa ssp. japonica HOM05D003628 ORTHO05D004253 2.3e-18 97.1 133 45.9
Thhalv10002420m.g Eutrema salsugineum HOM05D003628 ORTHO05D004253 3.0e-18 96.7 165 43.0
SEGI_10173 Sequoiadendron giganteum HOM05D003628 ORTHO05D004253 1.1e-15 88.2 95 53.7
Actinidia11385 Actinidia chinensis HOM05D003628 ORTHO05D004253 4.7e-11 72.8 63 63.5
Mapoly0068s0063 Marchantia polymorpha HOM05D003628 ORTHO05D004253 1.4e-10 71.2 150 39.3
SHI00869 Sapria himalayana HOM05D003628 ORTHO05D004253 1.4e-10 71.2 96 49.0
CBR_g38414 Chara braunii HOM05D003628 ORTHO05D004253 9.7e-09 65.1 103 39.8
Lj3A630T50 Lonicera japonica HOM05D003628 ORTHO05D004253 4.8e-08 62.8 86 53.5
SMO116G0337 Selaginella moellendorffii HOM05D003628 ORTHO05D004253 6.3e-08 62.4 92 43.5
AagrBONN_evm.TU.Sc2ySwM_362.1684 Anthoceros agrestis HOM05D003628 ORTHO05D004253 4.1e-07 59.7 130 37.7
TPR.G8204 Trifolium pratense HOM05D000108 ORTHO05D022289 6.9e-07 58.9 39 79.5
CDE04G0520 Ceratophyllum demersum HOM05D003628 ORTHO05D004253 7.7e-06 55.5 56 57.1
Pp3c20_15710 Physcomitrium patens HOM05D003628 ORTHO05D004253 7.7e-06 55.5 95 43.2


User provided reference genes

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