Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc59.4 Carica papaya HOM05D006910 ORTHO05D008937 5.0e-171 604.7 407 100.0
Atru.chr4.1910 Acer truncatum HOM05D006910 ORTHO05D008937 1.3e-65 254.6 322 54.0
Manes.03G158500 Manihot esculenta HOM05D006910 ORTHO05D008937 1.1e-61 241.5 326 52.8
QL06p021124 Quercus lobata HOM05D006910 ORTHO05D008937 1.6e-60 237.7 328 54.3
Haze_11463 Corylus avellana HOM05D006910 ORTHO05D008937 2.3e-59 233.8 347 48.1
Ciclev10004771m.g Citrus clementina HOM05D006910 ORTHO05D008937 5.2e-59 232.6 331 50.5
Prupe.1G049000 Prunus persica HOM05D006910 ORTHO05D008937 5.2e-59 232.6 325 53.2
DCAR_027350 Daucus carota HOM05D006910 ORTHO05D008937 2.4e-56 223.8 329 48.6
Thecc.04G265400 Theobroma cacao HOM05D006910 ORTHO05D008937 5.4e-56 222.6 329 52.0
Potri.010G065400 Populus trichocarpa HOM05D006910 ORTHO05D008937 2.5e-53 213.8 331 46.5
Nitab4.5_0006344g0050 Nicotiana tabacum HOM05D006910 ORTHO05D008937 3.3e-53 213.4 335 49.3
RcHm_v2.0_Chr4g0395481 Rosa chinensis HOM05D006910 ORTHO05D008937 3.3e-53 213.4 322 47.5
Sabra08G0131500 Salix brachista HOM05D006910 ORTHO05D008937 9.5e-53 211.8 319 48.3
FAN17G1396 Fragaria x ananassa HOM05D006910 ORTHO05D008937 1.1e-51 208.4 321 48.3
PGR031G1888 Punica granatum HOM05D006910 ORTHO05D008937 1.8e-51 207.6 327 49.5
Sabra10G0041700 Salix brachista HOM05D006910 ORTHO05D008937 1.8e-51 207.6 310 47.4
MD16G1226800 Malus domestica HOM05D006910 ORTHO05D008937 3.1e-51 206.8 324 46.9
FvH4_4g04670 Fragaria vesca HOM05D006910 ORTHO05D008937 1.5e-50 204.5 321 47.4
Hma1.2p1_0112F.1_g054780 Hydrangea macrophylla HOM05D006910 ORTHO05D008937 1.5e-50 204.5 326 48.5
Nitab4.5_0000355g0050 Nicotiana tabacum HOM05D006910 ORTHO05D008937 2.0e-50 204.1 339 46.0
FAN22G1859 Fragaria x ananassa HOM05D006910 ORTHO05D008937 4.4e-50 203.0 343 45.5
Peaxi162Scf00319g00521 Petunia axillaris HOM05D006910 ORTHO05D008937 7.5e-50 202.2 339 48.4
CiPaw.01G177500 Carya illinoinensis HOM05D006910 ORTHO05D008937 9.9e-50 201.8 271 53.9
Actinidia39932 Actinidia chinensis HOM05D006910 ORTHO05D008937 1.3e-49 201.4 325 50.5
FAN12G3461 Fragaria x ananassa HOM05D006910 ORTHO05D008937 2.2e-49 200.7 331 38.4
Glyma.20G199800 Glycine max HOM05D006910 ORTHO05D008937 8.3e-49 198.7 322 46.6
CSS0021483 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 4.1e-48 196.4 337 39.5
COL.COLO4_15971 Corchorus olitorius HOM05D006910 ORTHO05D008937 4.1e-48 196.4 328 46.3
PGR031G1691 Punica granatum HOM05D006910 ORTHO05D008937 4.1e-48 196.4 318 49.1
Phvul.011G133545 Phaseolus vulgaris HOM05D006910 ORTHO05D008937 9.2e-48 195.3 323 45.5
CSS0027831 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 1.6e-47 194.5 335 47.5
Lj5g0027299 Lotus japonicus HOM05D006910 ORTHO05D008937 2.1e-47 194.1 329 46.5
Sopen09g033910 Solanum pennellii HOM05D006910 ORTHO05D008937 2.1e-47 194.1 331 45.3
GSVIVG01027919001 Vitis vinifera HOM05D006910 ORTHO05D008937 6.0e-47 192.6 327 48.0
Rhsim02G0044100 Rhododendron simsii HOM05D006910 ORTHO05D008937 1.3e-46 191.4 319 48.0
vmacro15481 Vaccinium macrocarpon HOM05D006910 ORTHO05D008937 1.3e-46 191.4 326 48.2
Solyc09g090930.3 Solanum lycopersicum HOM05D006910 ORTHO05D008937 1.7e-46 191.0 331 45.0
Cc03_g06380 Coffea canephora HOM05D006910 ORTHO05D008937 3.0e-46 190.3 338 47.6
Dinv27116 Davidia involucrata HOM05D006910 ORTHO05D008937 5.1e-46 189.5 331 45.9
Duzib151G0386 Durio zibethinus HOM05D006910 ORTHO05D008937 2.5e-45 187.2 198 53.0
TWI53G1612 Tripterygium wilfordii HOM05D006910 ORTHO05D008937 4.3e-45 186.4 320 45.6
PGSC0003DMG400001551 Solanum tuberosum HOM05D006910 ORTHO05D008937 9.6e-45 185.3 339 45.7
Gorai.011G179800 Gossypium raimondii HOM05D006910 ORTHO05D008937 1.2e-44 184.9 329 47.7
Glyma.10G190700 Glycine max HOM05D006910 ORTHO05D008937 2.8e-44 183.7 324 45.7
VMungo0720G1174 Vigna mungo HOM05D006910 ORTHO05D008937 2.8e-44 183.7 323 43.3
CANSAT78G1020 Cannabis sativa HOM05D006910 ORTHO05D008937 6.2e-44 182.6 325 46.5
MD13G1221900 Malus domestica HOM05D006910 ORTHO05D008937 1.1e-43 181.8 326 46.0
Potri.008G172200 Populus trichocarpa HOM05D006910 ORTHO05D008937 1.1e-43 181.8 320 44.1
PGSC0003DMG400013458 Solanum tuberosum HOM05D006910 ORTHO05D008937 1.2e-42 178.3 346 44.8
Eucgr.H00126 Eucalyptus grandis HOM05D006910 ORTHO05D008937 1.5e-42 177.9 234 53.4
Dinv29800 Davidia involucrata HOM05D006910 ORTHO05D008937 3.4e-42 176.8 225 48.4
CAN.G524.13 Capsicum annuum HOM05D006910 ORTHO05D008937 7.6e-42 175.6 343 42.9
CAN.G638.37 Capsicum annuum HOM05D006910 ORTHO05D008937 7.6e-42 175.6 343 45.8
Hund20492 Selenicereus undatus HOM05D006910 ORTHO05D008937 7.6e-42 175.6 324 46.0
MSTRG.4175 Avicennia marina HOM05D006910 ORTHO05D008937 9.9e-42 175.3 343 41.1
Gohir.A10G107300 Gossypium hirsutum HOM05D006910 ORTHO05D008937 1.3e-41 174.9 327 46.2
Sopen03g001720 Solanum pennellii HOM05D006910 ORTHO05D008937 4.9e-41 172.9 334 44.9
Lj6C621T3 Lonicera japonica HOM05D006910 ORTHO05D008937 2.4e-40 170.6 331 45.6
Medtr1g073230 Medicago truncatula HOM05D006910 ORTHO05D008937 1.6e-39 167.9 326 43.3
Sc13g0003110 Simmondsia chinensis HOM05D006910 ORTHO05D008937 2.3e-38 164.1 295 44.4
EL10Ac3g06675 Beta vulgaris HOM05D006910 ORTHO05D008937 6.6e-38 162.5 320 44.7
AUR62015241 Chenopodium quinoa HOM05D006910 ORTHO05D008937 1.1e-37 161.8 322 46.6
arahy.Tifrunner.gnm1.ann1.YFRU1Z Arachis hypogaea HOM05D006910 ORTHO05D008937 7.3e-37 159.1 334 43.4
Psat6g131280 Pisum sativum HOM05D006910 ORTHO05D008937 1.3e-36 158.3 326 36.5
Gohir.D10G160000 Gossypium hirsutum HOM05D006910 ORTHO05D008937 1.6e-36 157.9 327 44.3
Nitab4.5_0000592g0430 Nicotiana tabacum HOM05D006910 ORTHO05D008937 2.1e-36 157.5 365 34.2
arahy.Tifrunner.gnm1.ann1.DX8ZNF Arachis hypogaea HOM05D006910 ORTHO05D008937 3.6e-36 156.8 334 43.1
Migut.G00574 Erythranthe guttata HOM05D006910 ORTHO05D008937 6.9e-35 152.5 333 41.7
Peaxi162Scf01044g00225 Petunia axillaris HOM05D006910 ORTHO05D008937 3.4e-34 150.2 332 40.7
Sp1g03360 Schrenkiella parvula HOM05D006910 ORTHO05D008937 3.4e-34 150.2 194 43.3
AT1G04530 Arabidopsis thaliana HOM05D006910 ORTHO05D008937 1.7e-33 147.9 201 43.3
CARHR003870 Cardamine hirsuta HOM05D006910 ORTHO05D008937 3.8e-33 146.7 205 43.9
ClCG05G003960 Citrullus lanatus HOM05D006910 ORTHO05D008937 6.4e-33 146.0 324 35.2
AL1G14180 Arabidopsis lyrata HOM05D006910 ORTHO05D008937 1.1e-32 145.2 201 42.8
SGA_v2.0_scaffold67G22680 Striga asiatica HOM05D006910 ORTHO05D008937 1.1e-32 145.2 326 39.6
A10p02950 Brassica napus HOM05D006910 ORTHO05D008937 1.4e-32 144.8 196 42.3
Thhalv10008199m.g Eutrema salsugineum HOM05D006910 ORTHO05D008937 1.4e-32 144.8 212 40.1
THA.LOC104801064 Tarenaya hassleriana HOM05D006910 ORTHO05D008937 1.9e-32 144.4 250 40.0
BraA10t42564Z Brassica rapa HOM05D006910 ORTHO05D008937 4.2e-32 143.3 196 42.3
Ah.13g074730 Amaranthus hybridus HOM05D006910 ORTHO05D008937 1.2e-31 141.7 324 41.7
CSS0004989 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 3.0e-30 137.1 338 32.2
Aa31LG1G20340 Aethionema arabicum HOM05D006910 ORTHO05D008937 6.6e-30 136.0 204 41.7
CsaV3_3G011640 Cucumis sativus L. HOM05D006910 ORTHO05D008937 6.6e-30 136.0 326 34.0
THA.LOC104826095 Tarenaya hassleriana HOM05D006910 ORTHO05D008937 6.6e-30 136.0 268 35.8
MELO3C006372.2 Cucumis melo HOM05D006910 ORTHO05D008937 8.7e-30 135.6 338 39.3
Lalb_Chr06g0169541 Lupinus albus HOM05D006910 ORTHO05D008937 3.3e-29 133.7 205 41.5
BolC5t29051H Brassica oleracea HOM05D006910 ORTHO05D008937 1.6e-28 131.3 197 41.1
C05p02700 Brassica napus HOM05D006910 ORTHO05D008937 2.1e-28 131.0 196 41.3
Nitab4.5_0002210g0060 Nicotiana tabacum HOM05D006910 ORTHO05D008937 2.8e-28 130.6 326 31.9
Carub.0001s0374 Capsella rubella HOM05D006910 ORTHO05D008937 3.6e-28 130.2 195 41.5
Sed0015418 Sechium edule HOM05D006910 ORTHO05D008937 2.0e-26 124.4 321 39.9
SalBow2G0872 Salvia bowleyana HOM05D006910 ORTHO05D008937 8.4e-25 119.0 332 32.5
Oeu011215.1 Olea europaea HOM05D006910 ORTHO05D008937 2.4e-24 117.5 312 41.7
Ca_09799_v3 Cicer arietinum L. HOM05D006910 ORTHO05D008937 3.5e-23 113.6 332 37.7
Lsat_1_v5_gn_6_66101 Lactuca sativa HOM05D006910 ORTHO05D008937 3.5e-23 113.6 187 42.2
TPR.G18548 Trifolium pratense HOM05D006910 ORTHO05D008937 3.5e-23 113.6 331 35.3
ECA248G3309 Erigeron canadensis HOM05D006910 ORTHO05D008937 1.6e-20 104.8 203 45.3
Aqoxy5G00146 Aquilegia oxysepala HOM05D007706 ORTHO05D009593 2.8e-20 104.0 171 44.4
Lsat_1_v5_gn_1_75580 Lactuca sativa HOM05D006910 ORTHO05D008937 6.2e-20 102.8 240 42.1
unitig_748.g8295 Utricularia gibba HOM05D006910 ORTHO05D008937 8.1e-20 102.4 320 33.4
HanXRQChr01g0023021 Helianthus annuus HOM05D006910 ORTHO05D008937 6.9e-19 99.4 72 58.3
C08p52150 Brassica napus HOM05D006910 ORTHO05D008937 7.6e-18 95.9 154 38.3
BolC8t52749H Brassica oleracea HOM05D006910 ORTHO05D008937 1.3e-17 95.1 154 38.3
Phvul.001G164700 Phaseolus vulgaris HOM05D007706 ORTHO05D009593 2.9e-17 94.0 151 40.4
AUR62025443 Chenopodium quinoa HOM05D006910 ORTHO05D008937 3.8e-17 93.6 124 41.9
AUR62018038 Chenopodium quinoa HOM05D006910 ORTHO05D008937 8.4e-17 92.4 236 43.6
PSO782G3886 Papaver somniferum HOM05D006910 ORTHO05D009593 3.2e-16 90.5 326 34.4
Actinidia37550 Actinidia chinensis HOM05D006910 ORTHO05D008937 4.6e-15 86.7 123 45.5
TAR362G1069 Trochodendron aralioides HOM05D007706 ORTHO05D009593 6.0e-15 86.3 170 38.2
PSO478G1200 Papaver somniferum HOM05D006910 ORTHO05D009593 7.9e-15 85.9 329 34.3
EL10Ac7g17683 Beta vulgaris HOM05D007706 ORTHO05D009593 3.9e-14 83.6 112 40.2
PSO541G4538 Papaver somniferum HOM05D007706 ORTHO05D009593 5.1e-14 83.2 169 34.9
MBI02_g19811_MAGBIO Magnolia biondii HOM05D006910 ORTHO05D025782 5.7e-13 79.7 108 37.0
Hma1.2p1_0366F.1_g136940 Hydrangea macrophylla HOM05D006910 ORTHO05D008937 7.4e-13 79.3 174 35.1
AUR62008796 Chenopodium quinoa HOM05D007706 ORTHO05D009593 1.3e-12 78.6 111 38.7
Nn1g02965 Nelumbo nucifera HOM05D007706 ORTHO05D009593 1.3e-12 78.6 192 36.5
Nn3g19784 Nelumbo nucifera HOM05D007706 ORTHO05D009593 8.2e-12 75.9 169 38.5
CDE05G1228 Ceratophyllum demersum HOM05D007706 ORTHO05D009593 2.4e-11 74.3 172 32.0
MBI10_g26041_MAGBIO Magnolia biondii HOM05D007706 ORTHO05D009593 3.4e-10 70.5 159 38.4
Nitab4.5_0000209g0150 Nicotiana tabacum HOM05D001903 ORTHO05D001847 1.0e-09 68.9 145 35.9
Rhsim03G0248500 Rhododendron simsii HOM05D001903 ORTHO05D001847 2.2e-09 67.8 75 44.0
Hund26517 Selenicereus undatus HOM05D001903 ORTHO05D001847 3.8e-09 67.0 98 37.8
PSO675G7213 Papaver somniferum HOM05D007706 ORTHO05D009593 5.0e-09 66.6 160 28.8
CSS0007043 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 6.5e-09 66.2 44 61.4
EL10Ac2g04227 Beta vulgaris HOM05D001903 ORTHO05D001847 1.1e-08 65.5 76 38.2
Actinidia11375 Actinidia chinensis HOM05D006910 ORTHO05D008937 1.9e-08 64.7 45 66.7
Nitab4.5_0008073g0040 Nicotiana tabacum HOM05D009844 ORTHO05D007252 2.5e-08 64.3 46 58.7
Duzib150G1231 Durio zibethinus HOM05D001903 ORTHO05D001847 5.5e-08 63.2 97 38.1
Cpa.g.sc10.261 Carica papaya HOM05D001903 ORTHO05D001847 1.6e-07 61.6 143 30.1
Os04g0496700 Oryza sativa ssp. japonica HOM05D001903 ORTHO05D001847 1.6e-07 61.6 77 39.0
Sabra13G0020900 Salix brachista HOM05D000307 ORTHO05D000166 1.6e-07 61.6 45 60.0
SMO118G0200 Selaginella moellendorffii HOM05D006910 ORTHO05D008937 1.6e-07 61.6 67 40.3
Aa31LG2G18260 Aethionema arabicum HOM05D001903 ORTHO05D001847 2.1e-07 61.2 128 32.0
Cfa010644 Carpinus fangiana HOM05D001903 ORTHO05D001847 2.1e-07 61.2 72 37.5
SEGI_24294 Sequoiadendron giganteum HOM05D006910 ORTHO05D008937 2.1e-07 61.2 44 52.3
A01p06030 Brassica napus HOM05D001903 ORTHO05D001847 4.6e-07 60.1 72 41.7
BraA01t00568Z Brassica rapa HOM05D001903 ORTHO05D001847 4.6e-07 60.1 72 41.7
ECA236G0985 Erigeron canadensis HOM05D007706 ORTHO05D009593 7.9e-07 59.3 93 40.9
MSTRG.18353 Avicennia marina HOM05D007706 ORTHO05D009593 1.0e-06 58.9 40 65.0
BcaC09g52017 Brassica carinata HOM05D001903 ORTHO05D001847 1.0e-06 58.9 72 41.7
PSO675G2181 Papaver somniferum HOM05D007706 ORTHO05D009593 1.0e-06 58.9 108 36.1
Sp7g30100 Schrenkiella parvula HOM05D001903 ORTHO05D001847 1.0e-06 58.9 72 41.7
C01p06630 Brassica napus HOM05D001903 ORTHO05D001847 1.3e-06 58.5 72 41.7
BolC1t00658H Brassica oleracea HOM05D001903 ORTHO05D001847 1.3e-06 58.5 72 41.7
AL2G41400 Arabidopsis lyrata HOM05D001903 ORTHO05D001847 1.8e-06 58.2 73 39.7
Nitab4.5_0000845g0230 Nicotiana tabacum HOM05D007706 ORTHO05D009593 1.8e-06 58.2 43 62.8
Peaxi162Scf00043g02924 Petunia axillaris HOM05D007706 ORTHO05D009593 1.8e-06 58.2 43 62.8
Gorai.010G137200 Gossypium raimondii HOM05D001903 ORTHO05D001847 2.3e-06 57.8 76 39.5
Oeu026810.1 Olea europaea HOM05D007706 ORTHO05D009593 2.3e-06 57.8 43 65.1
Aa31LG4G420 Aethionema arabicum HOM05D001903 ORTHO05D001847 3.0e-06 57.4 97 39.2
Thhalv10026052m.g Eutrema salsugineum HOM05D001903 ORTHO05D001847 3.0e-06 57.4 72 40.3
Gohir.D06G119399 Gossypium hirsutum HOM05D001903 ORTHO05D001847 3.0e-06 57.4 72 38.9
AT1G80130 Arabidopsis thaliana HOM05D001903 ORTHO05D001847 3.9e-06 57.0 73 38.4
Ca_08742_v3 Cicer arietinum L. HOM05D007706 ORTHO05D009593 5.1e-06 56.6 55 52.7
Sabra06G0198700 Salix brachista HOM05D001903 ORTHO05D001847 8.7e-06 55.8 80 33.8


User provided reference genes

Program Settings