Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc59.15 Carica papaya HOM05D001012 ORTHO05D006553 2.7e-77 292.0 154 100.0
COL.COLO4_15982 Corchorus olitorius HOM05D001012 ORTHO05D006553 2.8e-37 159.1 141 61.0
TWI53G2025 Tripterygium wilfordii HOM05D001012 ORTHO05D006553 1.8e-36 156.4 144 59.0
A05p16540 Brassica napus HOM05D001012 ORTHO05D006553 4.0e-36 155.2 160 58.8
BraA05t20558Z Brassica rapa HOM05D001012 ORTHO05D006553 4.0e-36 155.2 160 58.8
Thhalv10027024m.g Eutrema salsugineum HOM05D001012 ORTHO05D006553 5.2e-36 154.8 164 59.1
BraA04t16560Z Brassica rapa HOM05D001012 ORTHO05D006553 6.8e-36 154.5 155 61.3
A04p08680 Brassica napus HOM05D001012 ORTHO05D006553 8.9e-36 154.1 159 59.7
Duzib212G1028 Durio zibethinus HOM05D001012 ORTHO05D006553 8.9e-36 154.1 141 60.3
Ciclev10006525m.g Citrus clementina HOM05D001012 ORTHO05D006553 1.2e-35 153.7 144 59.0
Carub.0007s2910 Capsella rubella HOM05D001012 ORTHO05D006553 1.5e-35 153.3 163 58.3
Duzib151G0254 Durio zibethinus HOM05D001012 ORTHO05D006553 2.0e-35 152.9 142 62.0
BcaC08g44307 Brassica carinata HOM05D001012 ORTHO05D006553 2.6e-35 152.5 161 59.0
C06p17310 Brassica napus HOM05D001012 ORTHO05D006553 2.6e-35 152.5 161 59.0
BolC6t36927H Brassica oleracea HOM05D001012 ORTHO05D006553 2.6e-35 152.5 161 59.0
BcaC02g09422 Brassica carinata HOM05D001012 ORTHO05D006553 4.4e-35 151.8 157 59.9
C04p42440 Brassica napus HOM05D001012 ORTHO05D006553 4.4e-35 151.8 157 59.9
BolC4t25823H Brassica oleracea HOM05D001012 ORTHO05D006553 4.4e-35 151.8 157 59.9
CARHR219090 Cardamine hirsuta HOM05D001012 ORTHO05D006553 4.4e-35 151.8 159 58.5
BcaB03g16098 Brassica carinata HOM05D001012 ORTHO05D006553 5.8e-35 151.4 156 59.6
BcaB04g17687 Brassica carinata HOM05D001012 ORTHO05D006553 5.8e-35 151.4 163 57.7
Haze_11480 Corylus avellana HOM05D001012 ORTHO05D006553 5.8e-35 151.4 144 60.4
Cfa014796 Carpinus fangiana HOM05D001012 ORTHO05D006553 7.6e-35 151.0 144 59.7
AL9U10100 Arabidopsis lyrata HOM05D001012 ORTHO05D006553 9.9e-35 150.6 159 59.1
Duzib052G0032 Durio zibethinus HOM05D001012 ORTHO05D006553 9.9e-35 150.6 142 59.9
Thecc.04G266600 Theobroma cacao HOM05D001012 ORTHO05D006553 2.9e-34 149.1 141 58.2
AT4G13450 Arabidopsis thaliana HOM05D001012 ORTHO05D006553 3.7e-34 148.7 159 56.6
A08p06800 Brassica napus HOM05D001012 ORTHO05D006553 1.4e-33 146.7 157 56.7
BraA08t32698Z Brassica rapa HOM05D001012 ORTHO05D006553 1.4e-33 146.7 157 56.7
Lalb_Chr12g0204701 Lupinus albus HOM05D001012 ORTHO05D006553 3.2e-33 145.6 140 57.9
Glyma.05G165400 Glycine max HOM05D001012 ORTHO05D006553 4.1e-33 145.2 139 56.1
Sp7g11010 Schrenkiella parvula HOM05D001012 ORTHO05D006553 4.1e-33 145.2 163 55.8
VMungo0251G0808 Vigna mungo HOM05D001012 ORTHO05D006553 9.2e-33 144.1 144 55.6
Lalb_Chr13g0295511 Lupinus albus HOM05D001012 ORTHO05D006553 1.2e-32 143.7 147 56.5
Phvul.002G245600 Phaseolus vulgaris HOM05D001012 ORTHO05D006553 2.7e-32 142.5 146 55.5
Atru.chr4.1898 Acer truncatum HOM05D001012 ORTHO05D006553 3.5e-32 142.1 146 56.2
Lalb_Chr07g0186031 Lupinus albus HOM05D001012 ORTHO05D006553 1.7e-31 139.8 145 53.8
THA.LOC104804645 Tarenaya hassleriana HOM05D001012 ORTHO05D006553 1.7e-31 139.8 136 64.0
CANSAT78G1811 Cannabis sativa HOM05D001012 ORTHO05D006553 3.0e-31 139.0 145 55.2
Gohir.D09G232100 Gossypium hirsutum HOM05D001012 ORTHO05D006553 3.0e-31 139.0 141 53.2
Gorai.006G254900 Gossypium raimondii HOM05D001012 ORTHO05D006553 3.0e-31 139.0 141 53.2
MD11G1081000 Malus domestica HOM05D001012 ORTHO05D006553 3.0e-31 139.0 149 55.0
Manes.03G157600 Manihot esculenta HOM05D001012 ORTHO05D006553 3.0e-31 139.0 144 54.9
arahy.Tifrunner.gnm1.ann1.G1SBH4 Arachis hypogaea HOM05D001012 ORTHO05D006553 3.9e-31 138.7 139 55.4
arahy.Tifrunner.gnm1.ann1.LF7IV9 Arachis hypogaea HOM05D001012 ORTHO05D006553 3.9e-31 138.7 139 55.4
Aa31LG9G4190 Aethionema arabicum HOM05D001012 ORTHO05D006553 5.1e-31 138.3 163 52.1
Glyma.08G122800 Glycine max HOM05D001012 ORTHO05D006553 5.1e-31 138.3 144 53.5
Lj4g0004868 Lotus japonicus HOM05D001012 ORTHO05D006553 5.1e-31 138.3 139 54.0
Gohir.A09G231000 Gossypium hirsutum HOM05D001012 ORTHO05D006553 6.6e-31 137.9 141 53.2
Rhsim02G0163200 Rhododendron simsii HOM05D000001 ORTHO05D013373 8.6e-31 137.5 156 53.2
TAR633G0662 Trochodendron aralioides HOM05D001012 ORTHO05D006553 1.1e-30 137.1 147 51.0
Dinv29795 Davidia involucrata HOM05D001012 ORTHO05D006553 9.6e-30 134.0 144 54.2
Prupe.6G061400 Prunus persica HOM05D001012 ORTHO05D006553 1.2e-29 133.7 149 51.0
Gohir.A02G043500 Gossypium hirsutum HOM05D001012 ORTHO05D006553 2.1e-29 132.9 139 52.5
Gohir.D02G049100 Gossypium hirsutum HOM05D001012 ORTHO05D006553 2.8e-29 132.5 139 52.5
FAN22G2107 Fragaria x ananassa HOM05D001012 ORTHO05D006553 3.6e-29 132.1 158 49.4
QL06p021551 Quercus lobata HOM05D001012 ORTHO05D006553 8.1e-29 131.0 152 52.6
CiPaw.01G176800 Carya illinoinensis HOM05D001012 ORTHO05D006553 1.1e-28 130.6 145 51.7
Oeu047121.1 Olea europaea HOM05D001012 ORTHO05D006553 1.1e-28 130.6 148 52.7
GSVIVG01027936001 Vitis vinifera HOM05D001012 ORTHO05D006553 1.4e-28 130.2 147 49.7
FvH4_4g05010 Fragaria vesca HOM05D001012 ORTHO05D006553 1.8e-28 129.8 161 50.3
FAN12G4090 Fragaria x ananassa HOM05D001012 ORTHO05D006553 3.1e-28 129.0 160 48.8
Gorai.005G054300 Gossypium raimondii HOM05D001012 ORTHO05D006553 3.1e-28 129.0 135 52.6
ECA247G2191 Erigeron canadensis HOM05D001012 ORTHO05D006553 4.0e-28 128.6 154 45.5
PGR118G0004 Punica granatum HOM05D001012 ORTHO05D006553 4.0e-28 128.6 157 49.0
Sed0004779 Sechium edule HOM05D001012 ORTHO05D006553 4.0e-28 128.6 138 49.3
CSS0001601 Camellia sinensis var. sinensis HOM05D001012 ORTHO05D006553 5.2e-28 128.3 140 51.4
CSS0016929 Camellia sinensis var. sinensis HOM05D001012 ORTHO05D006553 5.2e-28 128.3 140 51.4
Oeu020134.1 Olea europaea HOM05D001012 ORTHO05D006553 5.2e-28 128.3 147 50.3
FAN17G2151 Fragaria x ananassa HOM05D001012 ORTHO05D006553 8.9e-28 127.5 161 49.7
MD16G1227600 Malus domestica HOM05D001012 ORTHO05D006553 1.2e-27 127.1 148 50.0
PGR031G3217 Punica granatum HOM05D001012 ORTHO05D006553 1.2e-27 127.1 157 48.4
Eucgr.H02904 Eucalyptus grandis HOM05D001012 ORTHO05D006553 4.4e-27 125.2 149 47.7
RcHm_v2.0_Chr4g0395821 Rosa chinensis HOM05D001012 ORTHO05D006553 5.8e-27 124.8 156 48.1
Ca_17859_v3 Cicer arietinum L. HOM05D001012 ORTHO05D006553 9.9e-27 124.0 151 50.3
PSO764G0162 Papaver somniferum HOM05D001012 ORTHO05D006553 9.9e-27 124.0 164 42.7
PSO832G0948 Papaver somniferum HOM05D001012 ORTHO05D006553 9.9e-27 124.0 162 43.2
Rhsim04G0171000 Rhododendron simsii HOM05D001012 ORTHO05D006553 9.9e-27 124.0 153 49.7
ClCG05G003930 Citrullus lanatus HOM05D001012 ORTHO05D006553 1.7e-26 123.2 157 45.2
Potri.010G064800 Populus trichocarpa HOM05D001012 ORTHO05D006553 1.7e-26 123.2 143 53.8
Psat7g065120 Pisum sativum HOM05D001012 ORTHO05D006553 2.9e-26 122.5 172 45.9
Prupe.1G050300 Prunus persica HOM05D001012 ORTHO05D006553 3.8e-26 122.1 140 52.9
MELO3C006368.2 Cucumis melo HOM05D001012 ORTHO05D006553 6.4e-26 121.3 152 44.1
Cc03_g06470 Coffea canephora HOM05D001012 ORTHO05D006553 1.1e-25 120.6 153 49.0
Lj6A637T67 Lonicera japonica HOM05D001012 ORTHO05D006553 1.1e-25 120.6 141 49.6
CsaV3_3G011600 Cucumis sativus L. HOM05D001012 ORTHO05D006553 3.2e-25 119.0 152 43.4
CSS0048740 Camellia sinensis var. sinensis HOM05D001012 ORTHO05D006553 7.1e-25 117.9 136 50.0
Migut.G00561 Erythranthe guttata HOM05D001012 ORTHO05D006553 9.3e-25 117.5 147 45.6
Medtr8g088230 Medicago truncatula HOM05D001012 ORTHO05D006553 9.3e-25 117.5 175 44.6
Nn1g02990 Nelumbo nucifera HOM05D001012 ORTHO05D006553 9.3e-25 117.5 153 49.7
Dinv27122 Davidia involucrata HOM05D001012 ORTHO05D006553 1.2e-24 117.1 148 45.9
BcaC07g37362 Brassica carinata HOM05D001012 ORTHO05D006553 1.6e-24 116.7 148 51.4
MD13G1223300 Malus domestica HOM05D001012 ORTHO05D006553 1.6e-24 116.7 148 48.0
MSTRG.24651 Avicennia marina HOM05D001012 ORTHO05D006553 7.8e-24 114.4 156 48.7
PGR004G0071 Punica granatum HOM05D001012 ORTHO05D006553 7.8e-24 114.4 181 40.3
FAN25G0383 Fragaria x ananassa HOM05D001012 ORTHO05D006553 2.3e-23 112.8 156 44.2
FvH4_3g38130 Fragaria vesca HOM05D001012 ORTHO05D006553 3.0e-23 112.5 150 46.0
Nn3g19798 Nelumbo nucifera HOM05D001012 ORTHO05D006553 3.0e-23 112.5 151 46.4
FAN16G2551 Fragaria x ananassa HOM05D001012 ORTHO05D006553 3.9e-23 112.1 150 46.0
RcHm_v2.0_Chr5g0068561 Rosa chinensis HOM05D001012 ORTHO05D006553 3.9e-23 112.1 150 46.7
Nitab4.5_0005154g0070 Nicotiana tabacum HOM05D001012 ORTHO05D006553 6.6e-23 111.3 188 39.9
Solyc09g090850.3 Solanum lycopersicum HOM05D001012 ORTHO05D006553 8.7e-23 110.9 185 36.8
HanXRQChr15g0464561 Helianthus annuus HOM05D001012 ORTHO05D006553 1.1e-22 110.5 143 42.0
Peaxi162Scf00531g00325 Petunia axillaris HOM05D001012 ORTHO05D006553 1.1e-22 110.5 182 40.7
FAN11G1796 Fragaria x ananassa HOM05D001012 ORTHO05D006553 1.5e-22 110.2 149 45.6
Nitab4.5_0001041g0100 Nicotiana tabacum HOM05D001012 ORTHO05D006553 1.5e-22 110.2 192 39.6
CiPaw.02G105800 Carya illinoinensis HOM05D001012 ORTHO05D006553 2.5e-22 109.4 121 51.2
Atru.chr12.1110 Acer truncatum HOM05D001012 ORTHO05D006553 3.3e-22 109.0 157 45.2
PGSC0003DMG400001554 Solanum tuberosum HOM05D001012 ORTHO05D006553 4.3e-22 108.6 180 38.9
CAN.G812.18 Capsicum annuum HOM05D001012 ORTHO05D006553 1.4e-20 103.6 179 36.9
FAN21G0806 Fragaria x ananassa HOM05D001012 ORTHO05D006553 1.8e-20 103.2 150 43.3
AUR62002870 Chenopodium quinoa HOM05D001012 ORTHO05D006553 3.1e-20 102.4 175 38.9
MBI10_g16813_MAGBIO Magnolia biondii HOM05D001012 ORTHO05D006553 5.3e-20 101.7 153 41.8
EL10Ac5g12825 Beta vulgaris HOM05D001012 ORTHO05D006553 1.5e-19 100.1 145 46.2
Sopen09g033810 Solanum pennellii HOM05D001012 ORTHO05D006553 2.0e-19 99.8 186 34.4
Lsat_1_v5_gn_9_39921 Lactuca sativa HOM05D001012 ORTHO05D006553 3.4e-19 99.0 120 49.2
AUR62035225 Chenopodium quinoa HOM05D001012 ORTHO05D006553 4.4e-19 98.6 176 37.5
EL10Ac3g06679 Beta vulgaris HOM05D001012 ORTHO05D006553 9.9e-19 97.4 170 40.0
HPP92_026009 Vanilla planifolia HOM05D001012 ORTHO05D006553 9.9e-19 97.4 163 41.7
SalBow3G0364 Salvia bowleyana HOM05D001012 ORTHO05D006553 3.8e-18 95.5 162 39.5
SalBow3G3922 Salvia bowleyana HOM05D001012 ORTHO05D006553 3.8e-18 95.5 162 39.5
AUR62010734 Chenopodium quinoa HOM05D001012 ORTHO05D006553 2.4e-17 92.8 141 46.8
C08p08090 Brassica napus HOM05D001012 ORTHO05D006553 3.5e-16 89.0 119 50.4
Ah.04g153780 Amaranthus hybridus HOM05D001012 ORTHO05D006553 5.6e-14 81.6 147 39.5
ATR0787G200 Amborella trichopoda HOM05D001012 ORTHO05D006553 1.3e-13 80.5 141 36.9
Zm00001eb222290 Zea mays HOM05D001012 ORTHO05D006553 3.6e-13 79.0 155 38.1
Os10g0463300 Oryza sativa ssp. japonica HOM05D001012 ORTHO05D006553 6.2e-13 78.2 142 39.4
THA.LOC104809104 Tarenaya hassleriana HOM05D001012 ORTHO05D006553 6.2e-13 78.2 63 60.3
SGA_v2.0_scaffold67G22675 Striga asiatica HOM05D001012 ORTHO05D006553 3.1e-12 75.9 112 40.2
TPR.G6786 Trifolium pratense HOM05D001012 ORTHO05D006553 6.9e-12 74.7 66 62.1
Nitab4.5_0002613g0090 Nicotiana tabacum HOM05D001012 ORTHO05D006553 5.8e-11 71.6 88 53.4
PSO063G0701 Papaver somniferum HOM05D001012 ORTHO05D002597 9.3e-09 64.3 129 31.8
TPR.G21551 Trifolium pratense HOM05D001012 ORTHO05D006553 1.6e-08 63.5 61 49.2
TWI09G0136 Tripterygium wilfordii HOM05D001012 ORTHO05D006553 4.6e-08 62.0 38 76.3
arahy.Tifrunner.gnm1.ann1.W7JP80 Arachis hypogaea HOM05D001012 ORTHO05D002597 1.0e-07 60.8 138 31.2
MSTRG.773 Avicennia marina HOM05D001012 ORTHO05D002597 1.0e-07 60.8 142 29.6
arahy.Tifrunner.gnm1.ann1.SZB8BC Arachis hypogaea HOM05D001012 ORTHO05D002597 1.3e-07 60.5 138 30.4
BolC8t47662H Brassica oleracea HOM05D001012 ORTHO05D006553 1.3e-07 60.5 60 58.3
MD03G1076500 Malus domestica HOM05D001012 ORTHO05D006553 1.8e-07 60.1 58 55.2
THA.LOC104805207 Tarenaya hassleriana HOM05D001012 ORTHO05D002597 2.3e-07 59.7 134 29.9
Oeu048130.1 Olea europaea HOM05D001012 ORTHO05D002597 3.0e-07 59.3 129 31.8
Aqoxy3G00542 Aquilegia oxysepala HOM05D001012 ORTHO05D002597 1.1e-06 57.4 127 29.9
TWI31G0760 Tripterygium wilfordii HOM05D001012 ORTHO05D002597 1.1e-06 57.4 137 26.3
FAN22G1093 Fragaria x ananassa HOM05D001012 ORTHO05D002597 1.5e-06 57.0 132 28.0
Lj4g0006717 Lotus japonicus HOM05D001012 ORTHO05D002597 1.5e-06 57.0 141 32.6
arahy.Tifrunner.gnm1.ann1.WLJ197 Arachis hypogaea HOM05D001012 ORTHO05D002597 1.9e-06 56.6 126 30.2
BraA09t38049Z Brassica rapa HOM05D001012 ORTHO05D002597 1.9e-06 56.6 129 28.7
MELO3C012161.2 Cucumis melo HOM05D001012 ORTHO05D002597 1.9e-06 56.6 129 27.9
Gohir.D11G037100 Gossypium hirsutum HOM05D001012 ORTHO05D002597 1.9e-06 56.6 135 29.6
Gorai.007G039900 Gossypium raimondii HOM05D001012 ORTHO05D002597 1.9e-06 56.6 135 29.6
FAN07G1604 Fragaria x ananassa HOM05D001012 ORTHO05D002597 2.5e-06 56.2 132 28.0
FAN07G2555 Fragaria x ananassa HOM05D001012 ORTHO05D002597 2.5e-06 56.2 132 28.0
Phvul.003G182600 Phaseolus vulgaris HOM05D001012 ORTHO05D002597 2.5e-06 56.2 136 30.9
vmacro08563 Vaccinium macrocarpon HOM05D001012 ORTHO05D006553 2.5e-06 56.2 56 50.0
ClCG00G003260 Citrullus lanatus HOM05D001012 ORTHO05D002597 3.3e-06 55.8 129 26.4
ClCG05G023590 Citrullus lanatus HOM05D001012 ORTHO05D002597 3.3e-06 55.8 129 26.4
FvH4_4g29580 Fragaria vesca HOM05D001012 ORTHO05D002597 3.3e-06 55.8 132 27.3
FAN12G4325 Fragaria x ananassa HOM05D001012 ORTHO05D002597 3.3e-06 55.8 132 27.3
PSO063G0991 Papaver somniferum HOM05D001012 ORTHO05D002597 3.3e-06 55.8 129 27.9
BolC9t56006H Brassica oleracea HOM05D001012 ORTHO05D002597 4.3e-06 55.5 129 28.7
Ciclev10033308m.g Citrus clementina HOM05D001012 ORTHO05D002597 4.3e-06 55.5 129 27.1
Dinv17453 Davidia involucrata HOM05D001012 ORTHO05D002597 4.3e-06 55.5 129 31.0
FAN17G2431 Fragaria x ananassa HOM05D001012 ORTHO05D002597 4.3e-06 55.5 132 27.3
Cfa008854 Carpinus fangiana HOM05D001012 ORTHO05D002597 5.6e-06 55.1 130 27.7
Cfa019367 Carpinus fangiana HOM05D001012 ORTHO05D002597 5.6e-06 55.1 135 28.9
Gohir.A11G033700 Gossypium hirsutum HOM05D001012 ORTHO05D002597 5.6e-06 55.1 135 29.6
TWI60G0495 Tripterygium wilfordii HOM05D001012 ORTHO05D002597 5.6e-06 55.1 131 26.7
TWI60G1118 Tripterygium wilfordii HOM05D001012 ORTHO05D002597 5.6e-06 55.1 131 26.7
BcaB07g30657 Brassica carinata HOM05D001012 ORTHO05D002597 7.4e-06 54.7 140 27.9
Manes.05G111800 Manihot esculenta HOM05D001012 ORTHO05D002597 7.4e-06 54.7 129 27.9
Mapoly0056s0094 Marchantia polymorpha HOM05D001012 ORTHO05D004721 7.4e-06 54.7 132 34.8
Haze_11874 Corylus avellana HOM05D001012 ORTHO05D002597 9.6e-06 54.3 130 26.9
Prupe.1G290800 Prunus persica HOM05D001012 ORTHO05D002597 9.6e-06 54.3 138 29.0
RcHm_v2.0_Chr4g0437821 Rosa chinensis HOM05D001012 ORTHO05D002597 9.6e-06 54.3 131 27.5
TWI81G0138 Tripterygium wilfordii HOM05D001012 ORTHO05D002597 9.6e-06 54.3 135 28.1
vmacro10443 Vaccinium macrocarpon HOM05D001012 ORTHO05D002597 9.6e-06 54.3 132 28.8


User provided reference genes

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