Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc59.129 Carica papaya HOM05D000634 ORTHO05D000517 7.1e-11 68.9 29 100.0
MD04G1006200 Malus domestica HOM05D000634 ORTHO05D000517 4.6e-10 66.2 29 93.1
Manes.15G050100 Manihot esculenta HOM05D000634 ORTHO05D000517 7.9e-10 65.5 29 89.7
Manes.03G152300 Manihot esculenta HOM05D000634 ORTHO05D000517 1.0e-09 65.1 29 86.2
Thecc.04G205400 Theobroma cacao HOM05D000634 ORTHO05D000517 1.3e-09 64.7 29 89.7
Dinv04647 Davidia involucrata HOM05D000634 ORTHO05D000517 2.3e-09 63.9 29 86.2
Dinv12693 Davidia involucrata HOM05D000634 ORTHO05D000517 2.3e-09 63.9 29 86.2
RcHm_v2.0_Chr4g0386041 Rosa chinensis HOM05D000634 ORTHO05D000517 2.3e-09 63.9 29 86.2
MELO3C020457.2 Cucumis melo HOM05D000634 ORTHO05D000517 3.0e-09 63.5 29 82.8
CsaV3_2G011470 Cucumis sativus L. HOM05D000634 ORTHO05D000517 3.9e-09 63.2 29 82.8
Hma1.2p1_0368F.1_g137260 Hydrangea macrophylla HOM05D000634 ORTHO05D000517 3.9e-09 63.2 29 86.2
Gohir.D09G198450 Gossypium hirsutum HOM05D000634 ORTHO05D000517 6.7e-09 62.4 29 86.2
Gohir.D09G198400 Gossypium hirsutum HOM05D000634 ORTHO05D000517 1.1e-08 61.6 29 86.2
Gohir.A09G204700 Gossypium hirsutum HOM05D000634 ORTHO05D000517 1.5e-08 61.2 29 86.2
Aa31sc37G50 Aethionema arabicum HOM05D000634 ORTHO05D000517 1.9e-08 60.8 29 75.9
CSS0009983 Camellia sinensis var. sinensis HOM05D000634 ORTHO05D000517 1.9e-08 60.8 29 79.3
CANSAT78G0157 Cannabis sativa HOM05D000634 ORTHO05D000517 1.9e-08 60.8 29 82.8
Duzib268G0419 Durio zibethinus HOM05D000634 ORTHO05D000517 1.9e-08 60.8 29 82.8
FvH4_4g00670 Fragaria vesca HOM05D000634 ORTHO05D000517 1.9e-08 60.8 29 82.8
FAN12G0264 Fragaria x ananassa HOM05D000634 ORTHO05D000517 1.9e-08 60.8 29 82.8
FAN12G2020 Fragaria x ananassa HOM05D000634 ORTHO05D000517 1.9e-08 60.8 29 82.8
FAN17G3089 Fragaria x ananassa HOM05D000634 ORTHO05D000517 1.9e-08 60.8 29 82.8
FAN22G0768 Fragaria x ananassa HOM05D000634 ORTHO05D000517 1.9e-08 60.8 29 82.8
Prupe.1G006400 Prunus persica HOM05D000634 ORTHO05D000517 2.5e-08 60.5 29 86.2
Rhsim13G0045200 Rhododendron simsii HOM05D000634 ORTHO05D000517 2.5e-08 60.5 29 82.8
TAR636G0709 Trochodendron aralioides HOM05D000634 ORTHO05D000517 2.5e-08 60.5 29 86.2
MD00G1019100 Malus domestica HOM05D000634 ORTHO05D000517 3.3e-08 60.1 29 82.8
Thecc.01G225500 Theobroma cacao HOM05D000634 ORTHO05D000517 3.3e-08 60.1 29 75.9
Ciclev10006192m.g Citrus clementina HOM05D000634 ORTHO05D000517 4.3e-08 59.7 28 82.1
Duzib212G0692 Durio zibethinus HOM05D000634 ORTHO05D000517 4.3e-08 59.7 29 79.3
Dinv19202 Davidia involucrata HOM05D000634 ORTHO05D000517 5.6e-08 59.3 28 82.1
Gohir.A09G204750 Gossypium hirsutum HOM05D000634 ORTHO05D000517 5.6e-08 59.3 29 82.8
Gorai.006G222000 Gossypium raimondii HOM05D000634 ORTHO05D000517 5.6e-08 59.3 29 82.8
ClCG06G007700 Citrullus lanatus HOM05D000634 ORTHO05D000517 7.4e-08 58.9 29 79.3
Gohir.D11G144300 Gossypium hirsutum HOM05D000634 ORTHO05D000517 7.4e-08 58.9 29 75.9
Gorai.007G154500 Gossypium raimondii HOM05D000634 ORTHO05D000517 7.4e-08 58.9 29 75.9
Duzib138G0750 Durio zibethinus HOM05D000634 ORTHO05D000517 9.6e-08 58.5 29 72.4
Eucgr.H00800 Eucalyptus grandis HOM05D000634 ORTHO05D000517 9.6e-08 58.5 29 75.9
MBI11_g04275_MAGBIO Magnolia biondii HOM05D000634 ORTHO05D000517 9.6e-08 58.5 29 79.3
TWI18G0687 Tripterygium wilfordii HOM05D000634 ORTHO05D000517 9.6e-08 58.5 29 72.4
Actinidia30076 Actinidia chinensis HOM05D000634 ORTHO05D000517 1.3e-07 58.2 29 79.3
Hma1.2p1_0226F.1_g095700 Hydrangea macrophylla HOM05D000634 ORTHO05D000517 1.3e-07 58.2 29 79.3
Lj2C1131T2 Lonicera japonica HOM05D000634 ORTHO05D000517 1.3e-07 58.2 29 75.9
Nitab4.5_0000045g0200 Nicotiana tabacum HOM05D000634 ORTHO05D000517 1.3e-07 58.2 29 75.9
Nitab4.5_0003312g0010 Nicotiana tabacum HOM05D000634 ORTHO05D000517 1.3e-07 58.2 29 75.9
CiPaw.03G149200 Carya illinoinensis HOM05D000634 ORTHO05D000517 1.6e-07 57.8 29 72.4
Nn1g07853 Nelumbo nucifera HOM05D000634 ORTHO05D000517 1.6e-07 57.8 29 72.4
Nitab4.5_0001564g0070 Nicotiana tabacum HOM05D000634 ORTHO05D000517 1.6e-07 57.8 29 79.3
Potri.002G242500 Populus trichocarpa HOM05D000634 ORTHO05D000517 1.6e-07 57.8 29 69.0
TAR365G0410 Trochodendron aralioides HOM05D000634 ORTHO05D000517 1.6e-07 57.8 29 82.8
TAR633G2775 Trochodendron aralioides HOM05D000634 ORTHO05D000517 1.6e-07 57.8 29 82.8
vmacro02759 Vaccinium macrocarpon HOM05D000634 ORTHO05D000517 1.6e-07 57.8 29 75.9
COL.COLO4_04559 Corchorus olitorius HOM05D000634 ORTHO05D000517 2.1e-07 57.4 29 75.9
Duzib133G0762 Durio zibethinus HOM05D000634 ORTHO05D000517 2.1e-07 57.4 29 72.4
Lj4P720T81 Lonicera japonica HOM05D000634 ORTHO05D000517 2.1e-07 57.4 29 75.9
PSO170G1361 Papaver somniferum HOM05D000634 ORTHO05D000517 2.1e-07 57.4 30 83.3
Actinidia37595 Actinidia chinensis HOM05D000634 ORTHO05D000517 2.8e-07 57.0 29 75.9
AUR62031798 Chenopodium quinoa HOM05D000634 ORTHO05D000517 2.8e-07 57.0 29 75.9
TWI09G0538 Tripterygium wilfordii HOM05D000634 ORTHO05D000517 2.8e-07 57.0 29 79.3
Carub.0008s0854 Capsella rubella HOM05D000634 ORTHO05D000517 3.7e-07 56.6 29 69.0
Sabra17G0041100 Salix brachista HOM05D000634 ORTHO05D000517 3.7e-07 56.6 29 75.9
Sabra17G0046100 Salix brachista HOM05D000634 ORTHO05D000517 3.7e-07 56.6 29 75.9
GSVIVG01028636001 Vitis vinifera HOM05D000634 ORTHO05D000517 3.7e-07 56.6 27 77.8
BcaC06g30757 Brassica carinata HOM05D000634 ORTHO05D000517 4.8e-07 56.2 29 69.0
Gohir.A11G138200 Gossypium hirsutum HOM05D000634 ORTHO05D000517 4.8e-07 56.2 29 72.4
Gohir.D08G212300 Gossypium hirsutum HOM05D000634 ORTHO05D000517 4.8e-07 56.2 29 69.0
Gorai.004G225700 Gossypium raimondii HOM05D000634 ORTHO05D000517 4.8e-07 56.2 29 69.0
CiPaw.04G105400 Carya illinoinensis HOM05D000634 ORTHO05D000517 6.2e-07 55.8 29 69.0
Eucgr.H00059 Eucalyptus grandis HOM05D000634 ORTHO05D000517 6.2e-07 55.8 27 74.1
Eucgr.K02164 Eucalyptus grandis HOM05D000634 ORTHO05D000517 6.2e-07 55.8 29 69.0
Phvul.008G125800 Phaseolus vulgaris HOM05D000634 ORTHO05D000517 6.2e-07 55.8 29 75.9
AT5G48810 Arabidopsis thaliana HOM05D000634 ORTHO05D000517 8.1e-07 55.5 29 65.5
CARHR182930 Cardamine hirsuta HOM05D000634 ORTHO05D000517 8.1e-07 55.5 29 69.0
Potri.017G054300 Populus trichocarpa HOM05D000634 ORTHO05D000517 8.1e-07 55.5 29 72.4
QL09p054521 Quercus lobata HOM05D000634 ORTHO05D000517 8.1e-07 55.5 28 71.4
ATR0215G021 Amborella trichopoda HOM05D000634 ORTHO05D000517 1.1e-06 55.1 29 69.0
AL516U10020 Arabidopsis lyrata HOM05D000634 ORTHO05D000517 1.1e-06 55.1 29 65.5
AL8G21980 Arabidopsis lyrata HOM05D000634 ORTHO05D000517 1.1e-06 55.1 29 65.5
EL10Ac7g17839 Beta vulgaris HOM05D000634 ORTHO05D000517 1.1e-06 55.1 29 65.5
Cpa.g.sc8.154 Carica papaya HOM05D000634 ORTHO05D000517 1.1e-06 55.1 29 72.4
Ciclev10022818m.g Citrus clementina HOM05D000634 ORTHO05D000517 1.1e-06 55.1 29 72.4
Manes.12G044900 Manihot esculenta HOM05D000634 ORTHO05D000517 1.1e-06 55.1 29 69.0
PGR044G2515 Punica granatum HOM05D000634 ORTHO05D000517 1.1e-06 55.1 29 75.9
Sp2g19190 Schrenkiella parvula HOM05D000634 ORTHO05D000517 1.1e-06 55.1 29 65.5
THA.LOC104821648 Tarenaya hassleriana HOM05D000634 ORTHO05D000517 1.1e-06 55.1 29 69.0
vmacro14752 Vaccinium macrocarpon HOM05D000634 ORTHO05D000517 1.1e-06 55.1 31 71.0
VMungo1383G0967 Vigna mungo HOM05D000634 ORTHO05D000517 1.1e-06 55.1 29 75.9
Atru.chr5.2120 Acer truncatum HOM05D000634 ORTHO05D000517 1.4e-06 54.7 29 69.0
Haze_11601 Corylus avellana HOM05D000634 ORTHO05D000517 1.4e-06 54.7 29 72.4
Glyma.18G170300 Glycine max HOM05D000634 ORTHO05D000517 1.4e-06 54.7 29 72.4
Aa31LG5G4370 Aethionema arabicum HOM05D000634 ORTHO05D000517 1.8e-06 54.3 29 72.4
AUR62008912 Chenopodium quinoa HOM05D000634 ORTHO05D000517 1.8e-06 54.3 29 72.4
Nitab4.5_0002641g0100 Nicotiana tabacum HOM05D000634 ORTHO05D000517 1.8e-06 54.3 29 69.0
Nitab4.5_0003151g0070 Nicotiana tabacum HOM05D000634 ORTHO05D000517 1.8e-06 54.3 29 69.0
TWI36G0168 Tripterygium wilfordii HOM05D000634 ORTHO05D000517 1.8e-06 54.3 29 65.5
Cfa014922 Carpinus fangiana HOM05D000634 ORTHO05D000517 2.4e-06 53.9 29 72.4
PGR083G1625 Punica granatum HOM05D000634 ORTHO05D000517 2.4e-06 53.9 31 71.0
Sed0005564 Sechium edule HOM05D000634 ORTHO05D000517 2.4e-06 53.9 29 72.4
Gohir.A07G201200 Gossypium hirsutum HOM05D000634 ORTHO05D000517 3.1e-06 53.5 29 65.5
Gohir.D07G207500 Gossypium hirsutum HOM05D000634 ORTHO05D000517 3.1e-06 53.5 29 65.5
Gorai.001G233900 Gossypium raimondii HOM05D000634 ORTHO05D000517 3.1e-06 53.5 29 65.5
Oeu022251.1 Olea europaea HOM05D000634 ORTHO05D000517 3.1e-06 53.5 25 80.0
Peaxi162Scf00107g02024 Petunia axillaris HOM05D000634 ORTHO05D000517 3.1e-06 53.5 28 71.4
Potri.001G314200 Populus trichocarpa HOM05D000634 ORTHO05D000517 3.1e-06 53.5 29 69.0
Sabra16G0198700 Salix brachista HOM05D000634 ORTHO05D000517 3.1e-06 53.5 29 69.0
Sed0000537 Sechium edule HOM05D000634 ORTHO05D000517 3.1e-06 53.5 29 75.9
BcaB04g19584 Brassica carinata HOM05D000634 ORTHO05D000517 4.0e-06 53.1 29 62.1
BcaC04g23762 Brassica carinata HOM05D000634 ORTHO05D000517 4.0e-06 53.1 29 62.1
C09p04940 Brassica napus HOM05D000634 ORTHO05D000517 4.0e-06 53.1 29 62.1
BolC9t53422H Brassica oleracea HOM05D000634 ORTHO05D000517 4.0e-06 53.1 29 62.1
Oeu004066.1 Olea europaea HOM05D000634 ORTHO05D000517 4.0e-06 53.1 25 76.0
Sed0001171 Sechium edule HOM05D000634 ORTHO05D000517 4.0e-06 53.1 29 75.9
THA.LOC104802674 Tarenaya hassleriana HOM05D000634 ORTHO05D000517 4.0e-06 53.1 29 69.0
A09p04620 Brassica napus HOM05D000634 ORTHO05D000517 5.3e-06 52.8 29 62.1
BraA09t36098Z Brassica rapa HOM05D000634 ORTHO05D000517 5.3e-06 52.8 29 62.1
ClCG05G003370 Citrullus lanatus HOM05D000634 ORTHO05D000517 5.3e-06 52.8 29 72.4
MELO3C006316.2 Cucumis melo HOM05D000634 ORTHO05D000517 5.3e-06 52.8 29 72.4
CsaV3_3G011020 Cucumis sativus L. HOM05D000634 ORTHO05D000517 5.3e-06 52.8 29 72.4
Sabra02G0184800 Salix brachista HOM05D000634 ORTHO05D000517 5.3e-06 52.8 29 69.0
A06p38910 Brassica napus HOM05D000634 ORTHO05D000517 6.9e-06 52.4 29 62.1
BolC7t44461H Brassica oleracea HOM05D000634 ORTHO05D000517 6.9e-06 52.4 29 62.1
BraA06t26805Z Brassica rapa HOM05D000634 ORTHO05D000517 6.9e-06 52.4 29 62.1
Glyma.18G154900 Glycine max HOM05D000634 ORTHO05D000517 6.9e-06 52.4 30 70.0
Mapoly0153s0010 Marchantia polymorpha HOM05D000634 ORTHO05D000517 6.9e-06 52.4 26 73.1
Hund05557 Selenicereus undatus HOM05D000634 ORTHO05D000517 6.9e-06 52.4 29 69.0
Solyc06g083440.3 Solanum lycopersicum HOM05D000634 ORTHO05D000517 6.9e-06 52.4 25 80.0
Sopen06g034800 Solanum pennellii HOM05D000634 ORTHO05D000517 6.9e-06 52.4 25 80.0
PGSC0003DMG400020160 Solanum tuberosum HOM05D000634 ORTHO05D000517 6.9e-06 52.4 25 80.0
VMungo0331G1727 Vigna mungo HOM05D000634 ORTHO05D000517 6.9e-06 52.4 30 70.0
Cfa002572 Carpinus fangiana HOM05D000634 ORTHO05D000517 9.0e-06 52.0 28 64.3
Cc01_g17010 Coffea canephora HOM05D000634 ORTHO05D000517 9.0e-06 52.0 29 69.0
Lj3g0004579 Lotus japonicus HOM05D000634 ORTHO05D000517 9.0e-06 52.0 30 70.0
Nn3g19963 Nelumbo nucifera HOM05D000634 ORTHO05D000517 9.0e-06 52.0 29 65.5
Oeu043136.1 Olea europaea HOM05D000634 ORTHO05D000517 9.0e-06 52.0 24 87.5
Oeu051537.1 Olea europaea HOM05D000634 ORTHO05D000517 9.0e-06 52.0 24 87.5
THA.LOC104822502 Tarenaya hassleriana HOM05D000634 ORTHO05D000517 9.0e-06 52.0 29 65.5


User provided reference genes

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