Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc58.20 Carica papaya HOM05D007412 ORTHO05D009313 7.0e-127 457.2 220 100.0
Thecc.04G243600 Theobroma cacao HOM05D007412 ORTHO05D009313 4.2e-95 351.7 220 77.7
Duzib212G0542 Durio zibethinus HOM05D007412 ORTHO05D009313 1.9e-92 342.8 222 76.1
COL.COLO4_15765 Corchorus olitorius HOM05D007412 ORTHO05D009313 1.6e-91 339.7 226 76.1
Gorai.011G164700 Gossypium raimondii HOM05D007412 ORTHO05D009313 2.0e-89 332.8 223 74.4
Gohir.A10G118720 Gossypium hirsutum HOM05D007412 ORTHO05D009313 4.5e-89 331.6 223 74.0
Gohir.D10G147600 Gossypium hirsutum HOM05D007412 ORTHO05D009313 1.3e-88 330.1 223 74.0
THA.LOC104826067 Tarenaya hassleriana HOM05D007412 ORTHO05D009313 2.1e-86 322.8 222 70.3
Prupe.1G026900 Prunus persica HOM05D007412 ORTHO05D009313 4.6e-86 321.6 223 74.0
Manes.15G035500 Manihot esculenta HOM05D007412 ORTHO05D009313 1.0e-85 320.5 221 73.3
GSVIVG01018092001 Vitis vinifera HOM05D007412 ORTHO05D009313 2.8e-83 312.4 222 72.5
MD11G1069500 Malus domestica HOM05D007412 ORTHO05D009313 6.2e-83 311.2 222 69.4
Sed0016634 Sechium edule HOM05D007412 ORTHO05D009313 6.2e-83 311.2 218 68.8
CsaV3_3G012710 Cucumis sativus L. HOM05D007412 ORTHO05D009313 3.1e-82 308.9 224 68.8
Eucgr.H00220 Eucalyptus grandis HOM05D007412 ORTHO05D009313 4.0e-82 308.5 174 82.2
BraA02t07833Z Brassica rapa HOM05D007412 ORTHO05D009313 2.0e-81 306.2 223 66.4
A02p27970 Brassica napus HOM05D007412 ORTHO05D009313 2.6e-81 305.8 223 66.4
BcaC03g16594 Brassica carinata HOM05D007412 ORTHO05D009313 5.8e-81 304.7 223 65.9
C02p44160 Brassica napus HOM05D007412 ORTHO05D009313 5.8e-81 304.7 223 65.9
BolC2t10457H Brassica oleracea HOM05D007412 ORTHO05D009313 5.8e-81 304.7 223 65.9
Dinv14073 Davidia involucrata HOM05D007412 ORTHO05D009313 5.8e-81 304.7 222 70.3
BcaB07g30560 Brassica carinata HOM05D007412 ORTHO05D009313 6.5e-80 301.2 222 65.8
FvH4_4g02220 Fragaria vesca HOM05D007412 ORTHO05D009313 1.1e-79 300.4 223 67.7
FAN12G2712 Fragaria x ananassa HOM05D007412 ORTHO05D009313 1.1e-79 300.4 223 67.7
Sp2g08560 Schrenkiella parvula HOM05D007412 ORTHO05D009313 1.1e-79 300.4 221 65.6
CANSAT78G1677 Cannabis sativa HOM05D007412 ORTHO05D009313 1.4e-79 300.1 218 67.4
FAN17G1959 Fragaria x ananassa HOM05D007412 ORTHO05D009313 2.5e-79 299.3 223 66.8
PGR142G1781 Punica granatum HOM05D007412 ORTHO05D009313 2.5e-79 299.3 222 67.6
Lsat_1_v5_gn_3_124261 Lactuca sativa HOM05D007412 ORTHO05D009313 3.2e-79 298.9 220 66.4
TAR362G0694 Trochodendron aralioides HOM05D007412 ORTHO05D009313 5.5e-79 298.1 215 70.2
CiPaw.01G192500 Carya illinoinensis HOM05D007412 ORTHO05D009313 7.1e-79 297.7 164 84.8
CARHR179730 Cardamine hirsuta HOM05D007412 ORTHO05D009313 9.3e-79 297.4 221 66.1
Oeu022316.1 Olea europaea HOM05D007412 ORTHO05D009313 1.2e-78 297.0 213 69.5
RcHm_v2.0_Chr4g0389531 Rosa chinensis HOM05D007412 ORTHO05D009313 3.5e-78 295.4 224 67.4
CSS0011967 Camellia sinensis var. sinensis HOM05D007412 ORTHO05D009313 4.6e-78 295.0 227 67.4
CSS0029364 Camellia sinensis var. sinensis HOM05D007412 ORTHO05D009313 4.6e-78 295.0 227 67.4
Migut.G00414 Erythranthe guttata HOM05D007412 ORTHO05D009313 7.9e-78 294.3 222 64.4
AL8G16510 Arabidopsis lyrata HOM05D007412 ORTHO05D009313 1.0e-77 293.9 218 66.1
MSTRG.4087 Avicennia marina HOM05D007412 ORTHO05D009313 1.0e-77 293.9 223 65.5
Lj6g0001594 Lotus japonicus HOM05D007412 ORTHO05D009313 1.0e-77 293.9 221 65.2
Peaxi162Scf01416g00013 Petunia axillaris HOM05D007412 ORTHO05D009313 1.0e-77 293.9 220 65.5
MELO3C006482.2 Cucumis melo HOM05D007412 ORTHO05D009313 1.3e-77 293.5 247 61.5
Thhalv10003269m.g Eutrema salsugineum HOM05D007412 ORTHO05D009313 2.3e-77 292.7 220 62.7
Cc00_g20670 Coffea canephora HOM05D007412 ORTHO05D009313 6.7e-77 291.2 227 64.8
AL37U10020 Arabidopsis lyrata HOM05D007412 ORTHO05D009313 1.1e-76 290.4 218 65.6
Nn1g02544 Nelumbo nucifera HOM05D007412 ORTHO05D009313 1.1e-76 290.4 220 66.8
Lj6A653T76 Lonicera japonica HOM05D007412 ORTHO05D009313 1.9e-76 289.7 213 64.8
QL06p015027 Quercus lobata HOM05D007412 ORTHO05D009313 2.5e-76 289.3 216 67.6
Ca_12212_v3 Cicer arietinum L. HOM05D007412 ORTHO05D009313 3.3e-76 288.9 210 64.8
Rhsim04G0195000 Rhododendron simsii HOM05D007412 ORTHO05D009313 4.3e-76 288.5 222 65.8
ECA240G0358 Erigeron canadensis HOM05D007412 ORTHO05D009313 7.4e-76 287.7 218 65.1
EL10Ac6g14279 Beta vulgaris HOM05D007412 ORTHO05D009313 1.6e-75 286.6 167 78.4
SalBow2G0207 Salvia bowleyana HOM05D007412 ORTHO05D009313 2.1e-75 286.2 216 64.8
Dinv44610 Davidia involucrata HOM05D007412 ORTHO05D009313 2.8e-75 285.8 202 72.8
Solyc09g083190.3 Solanum lycopersicum HOM05D007412 ORTHO05D009313 2.8e-75 285.8 211 63.5
Potri.010G078800 Populus trichocarpa HOM05D007412 ORTHO05D009313 3.7e-75 285.4 221 63.3
AT5G43750 Arabidopsis thaliana HOM05D007412 ORTHO05D009313 4.8e-75 285.0 218 64.2
PGSC0003DMG400006085 Solanum tuberosum HOM05D007412 ORTHO05D009313 4.8e-75 285.0 194 69.1
Sopen09g032110 Solanum pennellii HOM05D007412 ORTHO05D009313 6.3e-75 284.6 218 61.5
arahy.Tifrunner.gnm1.ann1.7ZK5QJ Arachis hypogaea HOM05D007412 ORTHO05D009313 8.2e-75 284.3 210 67.1
Carub.0008s0489 Capsella rubella HOM05D007412 ORTHO05D009313 8.2e-75 284.3 218 64.7
Haze_11268 Corylus avellana HOM05D007412 ORTHO05D009313 1.1e-74 283.9 213 68.5
Ciclev10005847m.g Citrus clementina HOM05D007412 ORTHO05D009313 1.8e-74 283.1 218 64.2
HanXRQChr03g0092521 Helianthus annuus HOM05D007412 ORTHO05D009313 1.8e-74 283.1 174 74.7
vmacro08398 Vaccinium macrocarpon HOM05D007412 ORTHO05D009313 6.9e-74 281.2 223 64.1
PSO210G6829 Papaver somniferum HOM05D007412 ORTHO05D009313 2.0e-73 279.6 223 63.7
PSO832G2518 Papaver somniferum HOM05D007412 ORTHO05D009313 2.0e-73 279.6 223 63.2
Sabra10G0064500 Salix brachista HOM05D007412 ORTHO05D009313 2.0e-73 279.6 221 61.5
Medtr5g042420 Medicago truncatula HOM05D007412 ORTHO05D009313 3.4e-73 278.9 164 75.6
arahy.Tifrunner.gnm1.ann1.VMTG6G Arachis hypogaea HOM05D007412 ORTHO05D009313 1.0e-72 277.3 172 76.2
Aqoxy5G00362 Aquilegia oxysepala HOM05D007412 ORTHO05D009313 2.9e-72 275.8 223 63.7
VMungo0720G2555 Vigna mungo HOM05D007412 ORTHO05D009313 8.5e-72 274.2 221 62.4
Phvul.007G280100 Phaseolus vulgaris HOM05D007412 ORTHO05D009313 2.5e-71 272.7 164 74.4
Glyma.10G000900 Glycine max HOM05D007412 ORTHO05D009313 7.9e-70 267.7 166 74.7
unitig_747.g21682 Utricularia gibba HOM05D002547 ORTHO05D009313 1.6e-67 260.0 164 73.8
Lalb_Chr01g0020811 Lupinus albus HOM05D007412 ORTHO05D009313 6.3e-67 258.1 166 70.5
Psat6g102120 Pisum sativum HOM05D007412 ORTHO05D009313 6.3e-67 258.1 161 70.8
ATR0665G092 Amborella trichopoda HOM05D007412 ORTHO05D009313 3.4e-65 252.3 163 67.5
Os01g0929100 Oryza sativa ssp. japonica HOM05D007412 ORTHO05D009313 1.3e-64 250.4 175 66.9
FAN22G2201 Fragaria x ananassa HOM05D007412 ORTHO05D009313 1.4e-63 246.9 323 45.5
Ah.03g138430 Amaranthus hybridus HOM05D007412 ORTHO05D009313 2.7e-62 242.7 180 66.1
MBI11_g15916_MAGBIO Magnolia biondii HOM05D007412 ORTHO05D009313 3.9e-61 238.8 163 68.1
Zm00001eb142440 Zea mays HOM05D007412 ORTHO05D009313 8.8e-61 237.7 161 68.9
CDE06G0695 Ceratophyllum demersum HOM05D007412 ORTHO05D009313 1.1e-60 237.3 165 66.1
DCAR_030707 Daucus carota HOM05D007412 ORTHO05D009313 4.8e-59 231.9 221 54.3
Glyma.19G263800 Glycine max HOM05D007412 ORTHO05D009313 1.3e-56 223.8 125 80.8
Nitab4.5_0010243g0010 Nicotiana tabacum HOM05D007412 ORTHO05D009313 4.7e-54 215.3 226 51.8
AUR62002782 Chenopodium quinoa HOM05D007412 ORTHO05D009313 1.4e-50 203.8 105 86.7
AUR62014099 Chenopodium quinoa HOM05D007412 ORTHO05D009313 1.2e-49 200.7 105 85.7
Glyma.02G000300 Glycine max HOM05D007412 ORTHO05D009313 3.6e-46 189.1 110 79.1
Nitab4.5_0000525g0020 Nicotiana tabacum HOM05D007412 ORTHO05D009313 6.7e-45 184.9 119 74.8
Phvul.006G006300 Phaseolus vulgaris HOM05D007412 ORTHO05D009313 3.3e-44 182.6 163 57.1
ClCG05G004710 Citrullus lanatus HOM05D000055 ORTHO05D000057 5.3e-42 175.3 216 50.5
SEGI_16394 Sequoiadendron giganteum HOM05D007412 ORTHO05D009313 3.8e-40 169.1 146 56.8
TWI73G0547 Tripterygium wilfordii HOM05D007412 ORTHO05D009313 1.6e-33 147.1 144 52.8
TPR.G4008 Trifolium pratense HOM05D007412 ORTHO05D009313 1.4e-29 134.0 87 69.0
Hund25023 Selenicereus undatus HOM05D007412 ORTHO05D009313 2.6e-28 129.8 77 77.9
Actinidia40098 Actinidia chinensis HOM05D007412 ORTHO05D009313 8.3e-27 124.8 118 52.5
Aa31LG2G9890 Aethionema arabicum HOM05D007412 ORTHO05D009313 8.3e-27 124.8 125 50.4
Pp3c21_10470 Physcomitrium patens HOM05D007412 ORTHO05D009313 3.0e-21 106.3 120 45.8
SMO137G0197 Selaginella moellendorffii HOM05D007412 ORTHO05D009313 1.1e-18 97.8 133 40.6
AagrBONN_evm.TU.Sc2ySwM_228.2018 Anthoceros agrestis HOM05D007412 ORTHO05D009313 3.2e-18 96.3 133 40.6
Eucgr.F02062 Eucalyptus grandis HOM05D007412 ORTHO05D009313 1.6e-14 84.0 41 87.8
Mapoly0063s0063 Marchantia polymorpha HOM05D007412 ORTHO05D009313 4.7e-14 82.4 122 38.5


User provided reference genes

Program Settings