Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc572.2 Carica papaya HOM05D004677 ORTHO05D005746 2.4e-170 602.1 296 100.0
COL.COLO4_20015 Corchorus olitorius HOM05D004677 ORTHO05D005746 1.7e-120 436.4 299 75.9
Duzib133G0523 Durio zibethinus HOM05D004677 ORTHO05D005746 3.6e-118 428.7 297 74.7
Gohir.D07G176800 Gossypium hirsutum HOM05D004677 ORTHO05D005746 3.4e-116 422.2 301 73.8
arahy.Tifrunner.gnm1.ann1.34K6GT Arachis hypogaea HOM05D004677 ORTHO05D005746 7.5e-116 421.0 298 73.5
CiPaw.03G158200 Carya illinoinensis HOM05D004677 ORTHO05D005746 1.7e-115 419.9 296 74.0
Gorai.001G197600 Gossypium raimondii HOM05D004677 ORTHO05D005746 1.7e-115 419.9 301 73.4
arahy.Tifrunner.gnm1.ann1.5LK61T Arachis hypogaea HOM05D004677 ORTHO05D005746 2.2e-115 419.5 298 73.5
Thecc.01G176700 Theobroma cacao HOM05D004677 ORTHO05D005746 4.9e-115 418.3 297 74.4
Cfa014357 Carpinus fangiana HOM05D004677 ORTHO05D005746 1.1e-114 417.2 297 73.1
TWI18G0105 Tripterygium wilfordii HOM05D004677 ORTHO05D005746 1.9e-114 416.4 278 76.3
Manes.13G068200 Manihot esculenta HOM05D004677 ORTHO05D005746 2.4e-114 416.0 306 73.5
QL08p032142 Quercus lobata HOM05D004677 ORTHO05D005746 9.2e-114 414.1 304 73.4
AL4G27910 Arabidopsis lyrata HOM05D004677 ORTHO05D005746 2.0e-113 412.9 294 71.4
FAN02G0422 Fragaria x ananassa HOM05D004677 ORTHO05D005746 2.7e-113 412.5 301 72.8
FAN05G4912 Fragaria x ananassa HOM05D004677 ORTHO05D005746 2.7e-113 412.5 301 72.8
Potri.014G155200 Populus trichocarpa HOM05D004677 ORTHO05D005746 6.0e-113 411.4 296 73.3
Prupe.3G214600 Prunus persica HOM05D004677 ORTHO05D005746 6.0e-113 411.4 300 73.7
Atru.chr6.3221 Acer truncatum HOM05D004677 ORTHO05D005746 7.8e-113 411.0 297 72.7
FvH4_6g42850 Fragaria vesca HOM05D004677 ORTHO05D005746 1.0e-112 410.6 301 72.4
Gohir.A07G174750 Gossypium hirsutum HOM05D004677 ORTHO05D005746 1.7e-112 409.8 302 70.5
Thhalv10017055m.g Eutrema salsugineum HOM05D004677 ORTHO05D005746 3.0e-112 409.1 293 71.7
AT2G32520 Arabidopsis thaliana HOM05D004677 ORTHO05D005746 3.9e-112 408.7 287 72.1
FAN14G2731 Fragaria x ananassa HOM05D004677 ORTHO05D005746 6.6e-112 407.9 301 71.8
THA.LOC104800998 Tarenaya hassleriana HOM05D004677 ORTHO05D005746 8.6e-112 407.5 294 70.7
Actinidia09726 Actinidia chinensis HOM05D004677 ORTHO05D005746 2.5e-111 406.0 295 71.2
Aa31LG5G4780 Aethionema arabicum HOM05D004677 ORTHO05D005746 5.6e-111 404.8 294 71.4
PGR142G1137 Punica granatum HOM05D004677 ORTHO05D005746 5.6e-111 404.8 296 72.6
Hma1.2p1_0895F.1_g233790 Hydrangea macrophylla HOM05D004677 ORTHO05D005746 9.5e-111 404.1 292 71.9
Dinv08753 Davidia involucrata HOM05D004677 ORTHO05D005746 1.6e-110 403.3 288 73.3
Sc12g0002230 Simmondsia chinensis HOM05D004677 ORTHO05D005746 2.1e-110 402.9 288 70.1
BcaC02g07915 Brassica carinata HOM05D004677 ORTHO05D005746 3.6e-110 402.1 294 72.1
C04p62010 Brassica napus HOM05D004677 ORTHO05D005746 3.6e-110 402.1 294 72.1
Glyma.06G307800 Glycine max HOM05D004677 ORTHO05D005746 3.6e-110 402.1 286 73.4
Carub.0004s1386 Capsella rubella HOM05D004677 ORTHO05D005746 8.1e-110 401.0 293 69.6
Ciclev10016206m.g Citrus clementina HOM05D004677 ORTHO05D005746 1.1e-109 400.6 294 71.8
Ca_19496_v3 Cicer arietinum L. HOM05D004677 ORTHO05D005746 2.3e-109 399.4 292 72.3
BolC4t27678H Brassica oleracea HOM05D004677 ORTHO05D005746 3.1e-109 399.1 287 71.8
BraA04t18010Z Brassica rapa HOM05D004677 ORTHO05D005746 3.1e-109 399.1 287 71.8
TWI36G1343 Tripterygium wilfordii HOM05D004677 ORTHO05D005746 1.2e-108 397.1 260 76.5
CANSAT64G2258 Cannabis sativa HOM05D004677 ORTHO05D005746 1.5e-108 396.7 294 71.1
RcHm_v2.0_Chr2g0158791 Rosa chinensis HOM05D004677 ORTHO05D005746 2.6e-108 396.0 295 70.2
vmacro12188 Vaccinium macrocarpon HOM05D004677 ORTHO05D005746 2.6e-108 396.0 264 76.9
Glyma.12G192200 Glycine max HOM05D004677 ORTHO05D005746 4.4e-108 395.2 258 76.4
Rhsim06G0164500 Rhododendron simsii HOM05D004677 ORTHO05D005746 7.5e-108 394.4 264 76.1
CSS0008737 Camellia sinensis var. sinensis HOM05D004677 ORTHO05D005746 9.8e-108 394.0 296 69.9
TPR.G4610 Trifolium pratense HOM05D004677 ORTHO05D005746 1.3e-107 393.7 291 71.8
BcaC02g11313 Brassica carinata HOM05D004677 ORTHO05D005746 3.7e-107 392.1 295 69.2
VMungo1080G1602 Vigna mungo HOM05D004677 ORTHO05D005746 3.7e-107 392.1 256 75.8
Psat7g201040 Pisum sativum HOM05D004677 ORTHO05D005746 1.1e-106 390.6 292 71.6
BraA05t20266Z Brassica rapa HOM05D004677 ORTHO05D005746 1.4e-106 390.2 294 69.0
Medtr4g049830 Medicago truncatula HOM05D004677 ORTHO05D005746 1.4e-106 390.2 299 70.2
Phvul.005G116100 Phaseolus vulgaris HOM05D004677 ORTHO05D005746 1.4e-106 390.2 254 76.8
C04p17150 Brassica napus HOM05D004677 ORTHO05D005746 2.4e-106 389.4 295 68.8
BolC4t23265H Brassica oleracea HOM05D004677 ORTHO05D005746 2.4e-106 389.4 295 68.8
Hund06461 Selenicereus undatus HOM05D004677 ORTHO05D005746 3.2e-106 389.0 254 76.0
TAR629G2143 Trochodendron aralioides HOM05D004677 ORTHO05D005746 3.2e-106 389.0 275 72.0
Lalb_Chr01g0005771 Lupinus albus HOM05D004677 ORTHO05D005746 6.0e-105 384.8 276 72.5
FAN09G3259 Fragaria x ananassa HOM05D004677 ORTHO05D005746 1.0e-104 384.0 301 69.1
CsaV3_7G003450 Cucumis sativus L. HOM05D004677 ORTHO05D005746 1.7e-104 383.3 297 68.7
Phvul.011G101800 Phaseolus vulgaris HOM05D004677 ORTHO05D005746 1.7e-104 383.3 288 70.8
A04p24990 Brassica napus HOM05D004677 ORTHO05D005746 2.3e-104 382.9 255 74.5
HanXRQChr03g0073261 Helianthus annuus HOM05D004677 ORTHO05D005746 3.0e-104 382.5 284 67.6
Lalb_Chr01g0023241 Lupinus albus HOM05D004677 ORTHO05D005746 3.0e-104 382.5 256 75.0
BcaB06g28600 Brassica carinata HOM05D004677 ORTHO05D005746 5.1e-104 381.7 254 75.2
CARHR126350 Cardamine hirsuta HOM05D004677 ORTHO05D005746 5.1e-104 381.7 255 73.3
Lj3g0003247 Lotus japonicus HOM05D004677 ORTHO05D005746 8.6e-104 380.9 257 74.3
VMungo1127G1216 Vigna mungo HOM05D004677 ORTHO05D005746 1.5e-103 380.2 287 70.4
A05p13260 Brassica napus HOM05D004677 ORTHO05D005746 7.3e-103 377.9 268 70.9
Migut.M00416 Erythranthe guttata HOM05D004677 ORTHO05D005746 1.2e-102 377.1 306 67.0
Eucgr.K00785 Eucalyptus grandis HOM05D004677 ORTHO05D005746 1.6e-102 376.7 249 74.3
Oeu027244.1 Olea europaea HOM05D004677 ORTHO05D005746 1.6e-102 376.7 256 72.7
MBI10_g43118_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 2.8e-102 375.9 263 71.1
Haze_12810 Corylus avellana HOM05D004677 ORTHO05D005746 4.7e-102 375.2 240 77.9
MELO3C018827.2 Cucumis melo HOM05D004677 ORTHO05D005746 6.2e-102 374.8 297 67.7
Sabra14G0117500 Salix brachista HOM05D004677 ORTHO05D005746 6.2e-102 374.8 404 54.7
Sp4g14870 Schrenkiella parvula HOM05D004677 ORTHO05D005746 1.1e-101 374.0 254 73.2
Nitab4.5_0004702g0010 Nicotiana tabacum HOM05D004677 ORTHO05D005746 1.8e-101 373.2 301 67.4
Hund00385 Selenicereus undatus HOM05D004677 ORTHO05D005746 2.3e-101 372.9 294 65.6
Nitab4.5_0000006g0310 Nicotiana tabacum HOM05D004677 ORTHO05D005746 1.2e-100 370.5 278 69.4
Lsat_1_v5_gn_9_106900 Lactuca sativa HOM05D004677 ORTHO05D005746 2.6e-100 369.4 287 67.2
DCAR_019755 Daucus carota HOM05D004677 ORTHO05D005746 4.4e-100 368.6 257 70.8
PSO675G6993 Papaver somniferum HOM05D004677 ORTHO05D005746 4.4e-100 368.6 250 73.2
Sopen05g026690 Solanum pennellii HOM05D004677 ORTHO05D005746 5.8e-100 368.2 276 69.6
AUR62012879 Chenopodium quinoa HOM05D004677 ORTHO05D005746 1.3e-99 367.1 273 66.7
AUR62027103 Chenopodium quinoa HOM05D004677 ORTHO05D005746 1.7e-99 366.7 288 64.2
Aqoxy1G03069 Aquilegia oxysepala HOM05D004677 ORTHO05D005746 2.9e-99 365.9 290 65.9
EL10Ac9g22065 Beta vulgaris HOM05D004677 ORTHO05D005746 2.9e-99 365.9 286 64.3
Cc05_g03990 Coffea canephora HOM05D004677 ORTHO05D005746 2.9e-99 365.9 284 68.0
ClCG02G002040 Citrullus lanatus HOM05D004677 ORTHO05D005746 3.8e-99 365.5 305 64.6
BcaB02g10464 Brassica carinata HOM05D004677 ORTHO05D005746 4.9e-99 365.2 255 71.0
Sed0004392 Sechium edule HOM05D004677 ORTHO05D005746 3.2e-98 362.5 295 65.8
MSTRG.14847 Avicennia marina HOM05D004677 ORTHO05D005746 4.1e-98 362.1 304 64.1
Lj3g0012150 Lotus japonicus HOM05D004677 ORTHO05D005746 1.0e-96 357.5 256 68.8
ATR0585G016 Amborella trichopoda HOM05D004677 ORTHO05D005746 1.3e-96 357.1 261 69.0
Peaxi162Scf00462g00089 Petunia axillaris HOM05D004677 ORTHO05D005746 1.3e-96 357.1 292 64.4
MBI10_g41369_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 3.0e-96 355.9 263 68.4
Zm00001eb162930 Zea mays HOM05D004677 ORTHO05D005746 1.9e-95 353.2 295 62.7
SEGI_04984 Sequoiadendron giganteum HOM05D004677 ORTHO05D005746 1.2e-94 350.5 281 65.1
Sed0023389 Sechium edule HOM05D004677 ORTHO05D005746 2.4e-93 346.3 261 66.7
CDE02G1429 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 3.1e-93 345.9 256 67.6
HanXRQChr15g0490311 Helianthus annuus HOM05D004677 ORTHO05D005746 3.1e-93 345.9 257 66.9
Lj1A770G43 Lonicera japonica HOM05D004677 ORTHO05D005746 1.5e-92 343.6 240 70.8
Os01g0531500 Oryza sativa ssp. japonica HOM05D004677 ORTHO05D005746 1.4e-90 337.0 290 61.4
MBI10_g41368_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 2.1e-89 333.2 241 68.9
HPP92_020158 Vanilla planifolia HOM05D004677 ORTHO05D005746 2.7e-89 332.8 256 66.4
SGA_v2.0_scaffold34G13862 Striga asiatica HOM05D004677 ORTHO05D005746 8.1e-86 321.2 282 62.4
MBI10_g35587_MAGBIO Magnolia biondii HOM05D004677 ORTHO05D005746 1.2e-81 307.4 261 61.7
SGA_v2.0_scaffold186G40184 Striga asiatica HOM05D004677 ORTHO05D005746 1.2e-81 307.4 287 58.2
ECA240G0706 Erigeron canadensis HOM05D004677 ORTHO05D005746 7.9e-81 304.7 246 61.4
SGA_v2.0_scaffold445G51724 Striga asiatica HOM05D004677 ORTHO05D005746 3.0e-80 302.8 281 57.7
Lsat_1_v5_gn_9_106880 Lactuca sativa HOM05D004677 ORTHO05D005746 7.4e-79 298.1 255 58.8
Lj3g0025926 Lotus japonicus HOM05D004677 ORTHO05D005746 1.6e-78 297.0 207 74.4
Oeu036746.3 Olea europaea HOM05D004677 ORTHO05D005746 1.4e-77 293.9 259 59.5
Mapoly0043s0053 Marchantia polymorpha HOM05D004677 ORTHO05D005746 6.9e-77 291.6 303 53.8
SMO351G0384 Selaginella moellendorffii HOM05D004677 ORTHO05D005746 2.0e-76 290.0 257 57.6
Lj5g0020236 Lotus japonicus HOM05D004677 ORTHO05D005746 2.3e-72 276.6 306 53.6
Pp3c16_5740 Physcomitrium patens HOM05D004677 ORTHO05D005746 2.3e-72 276.6 254 56.3
MD09G1072400 Malus domestica HOM05D004677 ORTHO05D005746 1.4e-69 267.3 242 58.7
Solyc05g043430.4 Solanum lycopersicum HOM05D004677 ORTHO05D005746 6.9e-69 265.0 207 69.6
CBR_g23740 Chara braunii HOM05D004677 ORTHO05D005746 1.4e-66 257.3 254 52.0
HPP92_020157 Vanilla planifolia HOM05D004677 ORTHO05D005746 1.4e-66 257.3 259 53.7
TAR627G1178 Trochodendron aralioides HOM05D004677 ORTHO05D005746 7.9e-65 251.5 191 66.5
Lj2g0012873 Lotus japonicus HOM05D004677 ORTHO05D005746 1.2e-60 237.7 300 48.0
SHI10364 Sapria himalayana HOM05D004677 ORTHO05D005746 1.1e-58 231.1 204 57.8
Lj2g0026590 Lotus japonicus HOM05D004677 ORTHO05D005746 1.5e-55 220.7 317 46.1
Nn1g03456 Nelumbo nucifera HOM05D004677 ORTHO05D005746 1.0e-51 208.0 161 65.8
Lj3g0001260 Lotus japonicus HOM05D004677 ORTHO05D005746 7.2e-50 201.8 281 45.2
MD17G1099100 Malus domestica HOM05D004677 ORTHO05D005746 1.0e-48 198.0 112 83.9
CDE08G0164 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 2.8e-46 189.9 106 81.1
AagrBONN_evm.TU.Sc2ySwM_117.68 Anthoceros agrestis HOM05D004677 ORTHO05D005746 2.4e-45 186.8 187 51.9
unitig_0.g733 Utricularia gibba HOM05D004677 ORTHO05D005746 6.5e-43 178.7 151 63.6
CDE08G1094 Ceratophyllum demersum HOM05D004677 ORTHO05D005746 1.4e-40 171.0 111 74.8
MCO13G274 Micromonas commoda HOM05D004677 ORTHO05D005746 1.8e-40 170.6 245 37.6
arahy.Tifrunner.gnm1.ann1.4D0QE2 Arachis hypogaea HOM05D004677 ORTHO05D005746 1.3e-38 164.5 115 73.9
Cre06.g294000 Chlamydomonas reinhardtii HOM05D004677 ORTHO05D005746 1.0e-35 154.8 236 37.3
PRCOL_00005478 Prasinoderma coloniale HOM05D004677 ORTHO05D005746 3.8e-35 152.9 235 37.4
arahy.Tifrunner.gnm1.ann1.IJK42W Arachis hypogaea HOM05D004677 ORTHO05D005746 1.1e-34 151.4 143 56.6
arahy.Tifrunner.gnm1.ann1.65RE86 Arachis hypogaea HOM05D004677 ORTHO05D005746 2.1e-33 147.1 156 53.8
SGA_v2.0_scaffold228G43250 Striga asiatica HOM05D004677 ORTHO05D005746 1.8e-32 144.1 123 60.2
MD17G1099200 Malus domestica HOM05D004677 ORTHO05D005746 1.7e-27 127.5 109 65.1
DCAR_013148 Daucus carota HOM05D004677 ORTHO05D005746 2.3e-24 117.1 106 58.5
Nn3g18971 Nelumbo nucifera HOM05D004677 ORTHO05D005746 1.7e-22 110.9 62 79.0
Nn1g04350 Nelumbo nucifera HOM05D004677 ORTHO05D005746 7.0e-21 105.5 103 56.3
Cre06.g258600 Chlamydomonas reinhardtii HOM05D004677 ORTHO05D005746 3.0e-16 90.1 270 27.8
FAN09G2974 Fragaria x ananassa HOM05D004677 ORTHO05D005746 1.3e-14 84.7 47 83.0
arahy.Tifrunner.gnm1.ann1.B7RHXH Arachis hypogaea HOM05D004677 ORTHO05D005746 4.9e-14 82.8 128 45.3
AagrBONN_evm.TU.Sc2ySwM_117.4165 Anthoceros agrestis HOM05D004677 ORTHO05D005746 1.1e-13 81.6 83 50.6
arahy.Tifrunner.gnm1.ann1.G1NRGV Arachis hypogaea HOM05D004677 ORTHO05D005746 6.6e-11 72.4 71 54.9
arahy.Tifrunner.gnm1.ann1.LRB7BH Arachis hypogaea HOM05D004677 ORTHO05D005746 2.8e-09 67.0 69 55.1
arahy.Tifrunner.gnm1.ann1.WARH89 Arachis hypogaea HOM05D004677 ORTHO05D005746 2.2e-06 57.4 38 73.7


User provided reference genes

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