Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc566.2 Carica papaya HOM05D000010 ORTHO05D000151 3.3e-145 518.5 282 100.0
Duzib160G0788 Durio zibethinus HOM05D000010 ORTHO05D000151 6.2e-43 178.7 318 42.8
Gohir.A10G068300 Gossypium hirsutum HOM05D000010 ORTHO05D000151 2.0e-41 173.7 322 42.5
Gohir.D10G082900 Gossypium hirsutum HOM05D000010 ORTHO05D000151 2.6e-41 173.3 322 42.2
Gorai.011G090000 Gossypium raimondii HOM05D000010 ORTHO05D000151 5.8e-41 172.2 324 42.0
Thecc.06G062600 Theobroma cacao HOM05D000010 ORTHO05D000151 4.9e-40 169.1 315 45.4
Gohir.D06G122200 Gossypium hirsutum HOM05D000010 ORTHO05D000151 3.9e-37 159.5 314 39.5
Gorai.010G142400 Gossypium raimondii HOM05D000010 ORTHO05D000151 6.6e-37 158.7 314 40.1
Gohir.A06G120000 Gossypium hirsutum HOM05D000010 ORTHO05D000151 1.5e-36 157.5 316 40.5
Cc02_g23810 Coffea canephora HOM05D000010 ORTHO05D000151 5.6e-36 155.6 294 41.2
Duzib192G0030 Durio zibethinus HOM05D000010 ORTHO05D000151 5.6e-36 155.6 317 43.8
TWI14G1020 Tripterygium wilfordii HOM05D000010 ORTHO05D000151 5.6e-36 155.6 319 40.1
Potri.003G046700 Populus trichocarpa HOM05D000010 ORTHO05D000151 9.6e-36 154.8 304 45.4
Potri.004G230800 Populus trichocarpa HOM05D000010 ORTHO05D000151 1.3e-35 154.5 306 40.2
Ciclev10001346m.g Citrus clementina HOM05D000010 ORTHO05D000151 1.8e-34 150.6 305 44.6
QL02p103750 Quercus lobata HOM05D000010 ORTHO05D000151 9.0e-34 148.3 313 39.9
TWI59G1027 Tripterygium wilfordii HOM05D000010 ORTHO05D000151 9.0e-34 148.3 319 40.1
Manes.06G015000 Manihot esculenta HOM05D000010 ORTHO05D000151 4.4e-33 146.0 320 45.0
CSS0012589 Camellia sinensis var. sinensis HOM05D000010 ORTHO05D000151 2.9e-32 143.3 312 41.0
CiPaw.05G000600 Carya illinoinensis HOM05D000010 ORTHO05D000151 4.9e-32 142.5 305 39.7
COL.COLO4_31097 Corchorus olitorius HOM05D000010 ORTHO05D000151 4.9e-32 142.5 305 38.0
CSS0036396 Camellia sinensis var. sinensis HOM05D000010 ORTHO05D000151 8.4e-32 141.7 304 39.8
Dinv30984 Davidia involucrata HOM05D000010 ORTHO05D000151 1.1e-31 141.4 291 39.9
HanXRQChr03g0071311 Helianthus annuus HOM05D000010 ORTHO05D000151 2.4e-31 140.2 297 39.1
TAR204G0001 Trochodendron aralioides HOM05D000010 ORTHO05D000151 3.5e-30 136.3 298 37.6
Sabra01G0175900 Salix brachista HOM05D000010 ORTHO05D000151 4.6e-30 136.0 308 38.6
Sabra03G0019500 Salix brachista HOM05D000010 ORTHO05D000151 1.7e-29 134.0 294 42.9
Lju629A0T14 Lonicera japonica HOM05D000010 ORTHO05D000151 3.9e-29 132.9 292 33.9
Haze_09957 Corylus avellana HOM05D000010 ORTHO05D000151 5.1e-29 132.5 306 39.5
Manes.14G161900 Manihot esculenta HOM05D000010 ORTHO05D000151 5.1e-29 132.5 289 38.8
Oeu016656.1 Olea europaea HOM05D000010 ORTHO05D000151 5.1e-29 132.5 303 38.3
Eucgr.G00054 Eucalyptus grandis HOM05D000010 ORTHO05D000151 6.6e-29 132.1 334 39.2
Oeu043595.1 Olea europaea HOM05D000010 ORTHO05D000151 1.1e-28 131.3 308 37.3
Phvul.003G090501 Phaseolus vulgaris HOM05D000010 ORTHO05D000151 4.3e-28 129.4 307 37.1
Ciclev10001401m.g Citrus clementina HOM05D000010 ORTHO05D000151 2.1e-27 127.1 325 35.4
Prupe.1G587100 Prunus persica HOM05D000010 ORTHO05D000151 2.1e-27 127.1 346 36.4
Glyma.07G271100 Glycine max HOM05D000010 ORTHO05D000151 1.8e-26 124.0 305 35.4
Rhsim11G0114800 Rhododendron simsii HOM05D000010 ORTHO05D000151 1.8e-26 124.0 304 36.5
Cfa004417 Carpinus fangiana HOM05D000010 ORTHO05D000151 3.1e-26 123.2 305 42.3
Glyma.17G002800 Glycine max HOM05D000010 ORTHO05D000151 3.1e-26 123.2 306 36.9
vmacro01628 Vaccinium macrocarpon HOM05D000010 ORTHO05D000151 4.0e-26 122.9 301 34.6
MSTRG.27891 Avicennia marina HOM05D000010 ORTHO05D000151 6.9e-26 122.1 303 34.0
Hma1.2p1_0157F.1_g069240 Hydrangea macrophylla HOM05D000010 ORTHO05D000151 9.0e-26 121.7 309 35.6
vmacro19817 Vaccinium macrocarpon HOM05D000010 ORTHO05D000151 1.2e-25 121.3 295 37.6
MSTRG.20343 Avicennia marina HOM05D000010 ORTHO05D000151 2.0e-25 120.6 308 34.4
Atru.chr6.93 Acer truncatum HOM05D000010 ORTHO05D000151 4.5e-25 119.4 301 38.5
Lj4g0026148 Lotus japonicus HOM05D000010 ORTHO05D000151 4.5e-25 119.4 327 34.6
CANSAT01G2200 Cannabis sativa HOM05D000010 ORTHO05D000151 5.8e-25 119.0 339 33.3
Nitab4.5_0000288g0060 Nicotiana tabacum HOM05D000010 ORTHO05D000151 5.8e-25 119.0 290 37.6
Lsat_1_v5_gn_7_68761 Lactuca sativa HOM05D000010 ORTHO05D000151 1.3e-24 117.9 320 40.0
THA.LOC104805127 Tarenaya hassleriana HOM05D000010 ORTHO05D000151 1.3e-24 117.9 314 36.9
MD15G1444700 Malus domestica HOM05D000010 ORTHO05D000151 1.7e-24 117.5 362 37.3
Aa31LG2G7660 Aethionema arabicum HOM05D000010 ORTHO05D000151 6.4e-24 115.5 313 35.5
MSTRG.16456 Avicennia marina HOM05D000010 ORTHO05D000151 6.4e-24 115.5 308 38.0
BolC9t55939H Brassica oleracea HOM05D000010 ORTHO05D000151 6.4e-24 115.5 299 35.1
DCAR_001871 Daucus carota HOM05D000010 ORTHO05D000151 6.4e-24 115.5 290 35.9
CARHR145000 Cardamine hirsuta HOM05D000010 ORTHO05D000151 8.4e-24 115.2 305 35.1
Sp2g13690 Schrenkiella parvula HOM05D000010 ORTHO05D000151 1.9e-23 114.0 303 36.0
Actinidia11724 Actinidia chinensis HOM05D000010 ORTHO05D000151 2.4e-23 113.6 325 34.8
BcaB07g30700 Brassica carinata HOM05D000010 ORTHO05D000151 2.4e-23 113.6 285 36.5
AL5G11730 Arabidopsis lyrata HOM05D000010 ORTHO05D000151 3.2e-23 113.2 304 35.9
Thhalv10004330m.g Eutrema salsugineum HOM05D000010 ORTHO05D000151 3.2e-23 113.2 299 35.5
PGR042G3966 Punica granatum HOM05D000010 ORTHO05D000151 3.2e-23 113.2 307 33.2
SGA_v2.0_scaffold419G51291 Striga asiatica HOM05D000010 ORTHO05D000151 3.2e-23 113.2 308 34.4
BcaB07g30335 Brassica carinata HOM05D000010 ORTHO05D000151 4.2e-23 112.8 309 38.5
Carub.0005s0147 Capsella rubella HOM05D000010 ORTHO05D000151 7.1e-23 112.1 305 35.1
BcaC04g21524 Brassica carinata HOM05D000010 ORTHO05D000151 2.1e-22 110.5 299 34.4
C09p30750 Brassica napus HOM05D000010 ORTHO05D000151 2.1e-22 110.5 299 34.4
Rhsim05G0117600 Rhododendron simsii HOM05D000010 ORTHO05D000151 2.7e-22 110.2 296 34.5
C02p50620 Brassica napus HOM05D000010 ORTHO05D000151 4.6e-22 109.4 310 34.2
BolC2t11138H Brassica oleracea HOM05D000010 ORTHO05D000151 4.6e-22 109.4 310 34.2
Peaxi162Scf00194g01039 Petunia axillaris HOM05D000010 ORTHO05D000151 4.6e-22 109.4 301 32.6
DCAR_022323 Daucus carota HOM05D000010 ORTHO05D000151 6.0e-22 109.0 279 35.1
AT2G02450 Arabidopsis thaliana HOM05D000010 ORTHO05D000151 1.0e-21 108.2 304 34.5
Actinidia00136 Actinidia chinensis HOM05D000010 ORTHO05D000151 2.3e-21 107.1 323 32.5
Lsat_1_v5_gn_9_82461 Lactuca sativa HOM05D000010 ORTHO05D000151 2.3e-21 107.1 287 32.8
VMungo1215G2762 Vigna mungo HOM05D000010 ORTHO05D000151 2.3e-21 107.1 312 32.1
ECA236G0491 Erigeron canadensis HOM05D000010 ORTHO05D000151 3.0e-21 106.7 294 31.6
Nitab4.5_0006129g0010 Nicotiana tabacum HOM05D000010 ORTHO05D000151 3.0e-21 106.7 311 32.8
Nitab4.5_0002274g0020 Nicotiana tabacum HOM05D000010 ORTHO05D000151 3.9e-21 106.3 291 33.7
THA.LOC104801776 Tarenaya hassleriana HOM05D000010 ORTHO05D000151 6.7e-21 105.5 304 39.1
CAN.G1379.14 Capsicum annuum HOM05D000010 ORTHO05D000151 8.7e-21 105.1 314 33.1
A02p32870 Brassica napus HOM05D000010 ORTHO05D000151 1.1e-20 104.8 300 33.3
BraA02t08306Z Brassica rapa HOM05D000010 ORTHO05D000151 1.1e-20 104.8 300 33.3
FvH4_5g27330 Fragaria vesca HOM05D000010 ORTHO05D000151 1.9e-20 104.0 370 31.9
FAN13G1441 Fragaria x ananassa HOM05D000010 ORTHO05D000151 1.9e-20 104.0 370 31.9
FAN18G2484 Fragaria x ananassa HOM05D000010 ORTHO05D000151 1.9e-20 104.0 370 31.9
Nitab4.5_0001085g0090 Nicotiana tabacum HOM05D000010 ORTHO05D000151 2.5e-20 103.6 304 32.2
Sopen01g045160 Solanum pennellii HOM05D000010 ORTHO05D000151 2.5e-20 103.6 303 38.9
A09p23890 Brassica napus HOM05D000010 ORTHO05D000151 3.3e-20 103.2 295 34.2
BraA06t27245Z Brassica rapa HOM05D000010 ORTHO05D000151 3.3e-20 103.2 309 33.7
PSO478G3097 Papaver somniferum HOM05D000010 ORTHO05D000151 3.3e-20 103.2 302 35.4
BcaC06g31232 Brassica carinata HOM05D000010 ORTHO05D000151 4.3e-20 102.8 308 34.4
BcaC06g34052 Brassica carinata HOM05D000010 ORTHO05D000151 4.3e-20 102.8 307 33.9
A06p43630 Brassica napus HOM05D000010 ORTHO05D000151 4.3e-20 102.8 310 33.5
C07p33240 Brassica napus HOM05D000010 ORTHO05D000151 4.3e-20 102.8 307 33.9
BolC7t43835H Brassica oleracea HOM05D000010 ORTHO05D000151 4.3e-20 102.8 307 33.9
RcHm_v2.0_Chr7g0218501 Rosa chinensis HOM05D000010 ORTHO05D000151 5.6e-20 102.4 367 33.5
BraA09t37993Z Brassica rapa HOM05D000010 ORTHO05D000151 7.4e-20 102.1 293 33.4
BcaC03g17139 Brassica carinata HOM05D000010 ORTHO05D000151 9.6e-20 101.7 309 33.0
MD08G1250000 Malus domestica HOM05D000010 ORTHO05D000151 9.6e-20 101.7 362 34.5
Aqoxy6G00013 Aquilegia oxysepala HOM05D000010 ORTHO05D000151 3.7e-19 99.8 309 32.0
HanXRQChr10g0279671 Helianthus annuus HOM05D000010 ORTHO05D000151 4.8e-19 99.4 295 32.9
Medtr4g134460 Medicago truncatula HOM05D000010 ORTHO05D000151 4.8e-19 99.4 327 30.9
arahy.Tifrunner.gnm1.ann1.JE37KP Arachis hypogaea HOM05D000010 ORTHO05D000151 6.2e-19 99.0 279 40.9
Lj9A243T49 Lonicera japonica HOM05D000010 ORTHO05D000151 1.1e-18 98.2 243 30.9
PSO782G1596 Papaver somniferum HOM05D000010 ORTHO05D000151 1.1e-18 98.2 302 35.1
Ca_13519_v3 Cicer arietinum L. HOM05D000010 ORTHO05D000151 1.8e-18 97.4 314 31.2
Psat4g002760 Pisum sativum HOM05D000010 ORTHO05D000151 3.1e-18 96.7 326 31.0
TPR.G5957 Trifolium pratense HOM05D000010 ORTHO05D000151 5.3e-18 95.9 103 55.3
ClCG10G007660 Citrullus lanatus HOM05D000010 ORTHO05D000151 2.0e-17 94.0 94 61.7
CsaV3_3G006790 Cucumis sativus L. HOM05D000010 ORTHO05D000151 2.0e-17 94.0 98 59.2
Oeu010604.1 Olea europaea HOM05D000010 ORTHO05D000151 2.0e-17 94.0 287 31.7
Migut.B00703 Erythranthe guttata HOM05D000010 ORTHO05D000151 2.6e-17 93.6 293 32.4
Solyc01g102740.3 Solanum lycopersicum HOM05D000010 ORTHO05D000151 4.5e-17 92.8 304 37.2
DCAR_003260 Daucus carota HOM05D000010 ORTHO05D000151 5.8e-17 92.4 252 31.7
Sed0022228 Sechium edule HOM05D000010 ORTHO05D000151 5.8e-17 92.4 309 38.8
AUR62032488 Chenopodium quinoa HOM05D000010 ORTHO05D000151 7.6e-17 92.0 158 43.0
AUR62040120 Chenopodium quinoa HOM05D000010 ORTHO05D000151 7.6e-17 92.0 158 42.4
Sed0000938 Sechium edule HOM05D000010 ORTHO05D000151 7.6e-17 92.0 94 59.6
unitig_699.g19836 Utricularia gibba HOM05D000010 ORTHO05D000151 1.0e-16 91.7 284 31.0
Migut.N00873 Erythranthe guttata HOM05D000010 ORTHO05D000151 1.3e-16 91.3 297 35.4
PGSC0003DMG400018262 Solanum tuberosum HOM05D000010 ORTHO05D000151 1.3e-16 91.3 314 36.3
Hund15306 Selenicereus undatus HOM05D000010 ORTHO05D000151 1.7e-16 90.9 356 30.9
GSVIVG01023123001 Vitis vinifera HOM05D000010 ORTHO05D000151 1.7e-16 90.9 82 62.2
Sc07g0003310 Simmondsia chinensis HOM05D000010 ORTHO05D000151 4.9e-16 89.4 313 30.4
Ah.03g136710 Amaranthus hybridus HOM05D000010 ORTHO05D000151 6.5e-16 89.0 297 30.6
EL10Ac6g13957 Beta vulgaris HOM05D000010 ORTHO05D000151 8.4e-16 88.6 91 59.3
unitig_747.g21283 Utricularia gibba HOM05D000010 ORTHO05D000151 8.4e-16 88.6 279 30.1
Ah.02g128570 Amaranthus hybridus HOM05D000010 ORTHO05D000151 5.5e-15 85.9 112 49.1
Sc03g0005620 Simmondsia chinensis HOM05D000010 ORTHO05D000151 1.2e-14 84.7 281 32.0
FAN04G2263 Fragaria x ananassa HOM05D000010 ORTHO05D000151 2.1e-14 84.0 92 52.2
FAN08G1387 Fragaria x ananassa HOM05D000010 ORTHO05D000151 4.6e-14 82.8 373 30.8
MELO3C016444.2 Cucumis melo HOM05D000010 ORTHO05D000151 7.9e-14 82.0 117 47.9
Lalb_Chr13g0304421 Lupinus albus HOM05D000010 ORTHO05D000151 1.3e-13 81.3 180 36.1
PGR142G3344 Punica granatum HOM05D000010 ORTHO05D000151 1.3e-13 81.3 130 45.4
SHI30523 Sapria himalayana HOM05D000010 ORTHO05D000151 8.7e-13 78.6 224 31.2
Lalb_Chr12g0195911 Lupinus albus HOM05D000010 ORTHO05D000151 2.5e-12 77.0 165 38.2
ATR1089G034 Amborella trichopoda HOM05D000010 ORTHO05D000151 5.7e-12 75.9 284 28.2
Peaxi162Scf00150g00001 Petunia axillaris HOM05D000010 ORTHO05D000151 1.6e-11 74.3 241 32.0
Os05g0418800 Oryza sativa ssp. japonica HOM05D000010 ORTHO05D000151 1.1e-10 71.6 76 52.6
Zm00001eb288270 Zea mays HOM05D000010 ORTHO05D000151 1.8e-10 70.9 321 31.2
Os01g0888300 Oryza sativa ssp. japonica HOM05D000010 ORTHO05D000151 5.3e-10 69.3 104 42.3
Zm00001eb145340 Zea mays HOM05D000010 ORTHO05D000151 9.0e-10 68.6 84 47.6
Zm00001eb260790 Zea mays HOM05D000010 ORTHO05D000151 1.2e-09 68.2 292 26.7
HPP92_016126 Vanilla planifolia HOM05D000010 ORTHO05D000151 1.5e-09 67.8 105 45.7
arahy.Tifrunner.gnm1.ann1.83Q9A2 Arachis hypogaea HOM05D000010 ORTHO05D009770 3.8e-08 63.2 225 40.0
HPP92_001205 Vanilla planifolia HOM05D000010 ORTHO05D000151 1.1e-07 61.6 87 42.5
Zm00001eb349120 Zea mays HOM05D000010 ORTHO05D000151 2.1e-06 57.4 35 80.0
SEGI_15071 Sequoiadendron giganteum HOM05D000010 ORTHO05D000151 7.9e-06 55.5 72 45.8


User provided reference genes

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