Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc56.60 Carica papaya HOM05D006892 ORTHO05D008592 3.2e-40 167.9 83 100.0
MD12G1154700 Malus domestica HOM05D006892 ORTHO05D008592 2.1e-15 85.5 69 56.5
Phvul.010G009200 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 1.5e-13 79.3 88 46.6
Ciclev10013234m.g Citrus clementina HOM05D006892 ORTHO05D008592 2.6e-13 78.6 77 48.1
Glyma.01G105400 Glycine max HOM05D006892 ORTHO05D008592 2.6e-13 78.6 81 46.9
Haze_20883 Corylus avellana HOM05D006892 ORTHO05D008592 3.4e-13 78.2 79 53.2
Haze_20892 Corylus avellana HOM05D006892 ORTHO05D008592 3.4e-13 78.2 79 53.2
Lj1g0020029 Lotus japonicus HOM05D006892 ORTHO05D008592 3.4e-13 78.2 79 48.1
MD04G1138900 Malus domestica HOM05D006892 ORTHO05D008592 3.4e-13 78.2 69 53.6
Thecc.05G029200 Theobroma cacao HOM05D006892 ORTHO05D008592 5.7e-13 77.4 72 52.8
Glyma.07G139200 Glycine max HOM05D006892 ORTHO05D008592 9.8e-13 76.6 79 48.1
Atru.chr8.2090 Acer truncatum HOM05D006892 ORTHO05D008592 1.3e-12 76.3 78 48.7
Dinv34454 Davidia involucrata HOM05D006892 ORTHO05D008592 1.7e-12 75.9 80 47.5
Medtr7g065130 Medicago truncatula HOM05D006892 ORTHO05D008592 1.7e-12 75.9 76 50.0
Prupe.6G264500 Prunus persica HOM05D006892 ORTHO05D008592 1.7e-12 75.9 79 45.6
RcHm_v2.0_Chr3g0464651 Rosa chinensis HOM05D006892 ORTHO05D008592 3.7e-12 74.7 80 47.5
TPR.G34921 Trifolium pratense HOM05D006892 ORTHO05D008592 3.7e-12 74.7 76 48.7
Glyma.04G105400 Glycine max HOM05D006892 ORTHO05D008592 4.8e-12 74.3 79 48.1
Ciclev10033223m.g Citrus clementina HOM05D006892 ORTHO05D008592 6.3e-12 73.9 70 45.7
Gohir.A09G152400 Gossypium hirsutum HOM05D006892 ORTHO05D008592 6.3e-12 73.9 70 54.3
Gohir.D09G148100 Gossypium hirsutum HOM05D006892 ORTHO05D008592 6.3e-12 73.9 70 54.3
Gorai.006G169100 Gossypium raimondii HOM05D006892 ORTHO05D008592 6.3e-12 73.9 70 54.3
FAN14G5964 Fragaria x ananassa HOM05D006892 ORTHO05D008592 1.1e-11 73.2 80 46.2
Glyma.03G073200 Glycine max HOM05D006892 ORTHO05D008592 1.4e-11 72.8 83 47.0
Psat3g133520 Pisum sativum HOM05D006892 ORTHO05D008592 1.4e-11 72.8 75 49.3
CSS0014654 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 2.4e-11 72.0 82 48.8
FAN02G3144 Fragaria x ananassa HOM05D006892 ORTHO05D008592 2.4e-11 72.0 80 46.2
FAN05G3252 Fragaria x ananassa HOM05D006892 ORTHO05D008592 2.4e-11 72.0 70 48.6
FAN09G3730 Fragaria x ananassa HOM05D006892 ORTHO05D008592 2.4e-11 72.0 80 46.2
Glyma.18G189800 Glycine max HOM05D006892 ORTHO05D008592 2.4e-11 72.0 71 50.7
TAR636G2473 Trochodendron aralioides HOM05D006892 ORTHO05D008592 3.1e-11 71.6 78 46.2
Dinv37115 Davidia involucrata HOM05D006892 ORTHO05D008592 5.4e-11 70.9 76 47.4
FvH4_6g12730 Fragaria vesca HOM05D006892 ORTHO05D008592 5.4e-11 70.9 80 45.0
TAR623G0452 Trochodendron aralioides HOM05D006892 ORTHO05D008592 5.4e-11 70.9 70 52.9
Lj3g0005144 Lotus japonicus HOM05D006892 ORTHO05D008592 7.0e-11 70.5 70 48.6
arahy.Tifrunner.gnm1.ann1.KB6CC9 Arachis hypogaea HOM05D006892 ORTHO05D008592 1.2e-10 69.7 58 55.2
arahy.Tifrunner.gnm1.ann1.KX701I Arachis hypogaea HOM05D006892 ORTHO05D008592 1.2e-10 69.7 58 55.2
COL.COLO4_14695 Corchorus olitorius HOM05D006892 ORTHO05D008592 1.2e-10 69.7 71 47.9
Manes.09G098400 Manihot esculenta HOM05D006892 ORTHO05D008592 2.0e-10 68.9 81 46.9
Phvul.008G114100 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 2.7e-10 68.6 76 48.7
Rhsim05G0199800 Rhododendron simsii HOM05D006892 ORTHO05D008592 2.7e-10 68.6 80 48.8
Lalb_Chr19g0125031 Lupinus albus HOM05D006892 ORTHO05D008592 3.5e-10 68.2 77 46.8
Hma1.2p1_0039F.1_g024865 Hydrangea macrophylla HOM05D006892 ORTHO05D008592 4.5e-10 67.8 69 46.4
Hma1.2p1_0039F.1_g024870 Hydrangea macrophylla HOM05D006892 ORTHO05D008592 4.5e-10 67.8 69 46.4
CiPaw.10G149300 Carya illinoinensis HOM05D006892 ORTHO05D008592 7.7e-10 67.0 54 59.3
Lalb_Chr03g0042701 Lupinus albus HOM05D006892 ORTHO05D008592 7.7e-10 67.0 76 47.4
HanXRQChr05g0156901 Helianthus annuus HOM05D006892 ORTHO05D008592 1.7e-09 65.9 85 47.1
Manes.08G082100 Manihot esculenta HOM05D006892 ORTHO05D008592 1.7e-09 65.9 71 47.9
Cc06_g02080 Coffea canephora HOM05D006892 ORTHO05D008592 2.9e-09 65.1 87 44.8
Medtr4g019640 Medicago truncatula HOM05D006892 ORTHO05D008592 2.9e-09 65.1 73 45.2
Potri.006G092300 Populus trichocarpa HOM05D006892 ORTHO05D008592 3.8e-09 64.7 76 48.7
Gohir.D04G125400 Gossypium hirsutum HOM05D006892 ORTHO05D008592 5.0e-09 64.3 71 47.9
Gorai.012G108500 Gossypium raimondii HOM05D006892 ORTHO05D008592 5.0e-09 64.3 71 47.9
MBI14_g02866_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 5.0e-09 64.3 74 43.2
CiPaw.09G201300 Carya illinoinensis HOM05D006892 ORTHO05D008592 6.5e-09 63.9 84 48.8
Haze_17148 Corylus avellana HOM05D000015 ORTHO05D000270 6.5e-09 63.9 72 44.4
Haze_17150 Corylus avellana HOM05D006892 ORTHO05D008592 6.5e-09 63.9 71 43.7
Sabra06G0070000 Salix brachista HOM05D006892 ORTHO05D008592 6.5e-09 63.9 73 46.6
MBI14_g02865_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 8.5e-09 63.5 74 43.2
Gohir.A04G085600 Gossypium hirsutum HOM05D006892 ORTHO05D008592 1.1e-08 63.2 71 49.3
Phvul.001G238200 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 1.5e-08 62.8 73 42.5
Psat7g241320 Pisum sativum HOM05D006892 ORTHO05D008592 1.5e-08 62.8 79 45.6
GSVIVG01016437001 Vitis vinifera HOM05D006892 ORTHO05D008592 1.5e-08 62.8 71 45.1
Cfa001402 Carpinus fangiana HOM05D006892 ORTHO05D008592 1.9e-08 62.4 71 45.1
Potri.010G196500 Populus trichocarpa HOM05D006892 ORTHO05D008592 1.9e-08 62.4 69 43.5
arahy.Tifrunner.gnm1.ann1.71B432 Arachis hypogaea HOM05D006892 ORTHO05D008592 2.5e-08 62.0 71 43.7
arahy.Tifrunner.gnm1.ann1.AC77RP Arachis hypogaea HOM05D006892 ORTHO05D008592 2.5e-08 62.0 71 43.7
Haze_18710 Corylus avellana HOM05D006892 ORTHO05D008592 2.5e-08 62.0 72 43.1
Lsat_1_v5_gn_9_32981 Lactuca sativa HOM05D006892 ORTHO05D008592 2.5e-08 62.0 76 46.1
Gorai.011G273300 Gossypium raimondii HOM05D006892 ORTHO05D008592 3.2e-08 61.6 77 41.6
Potri.016G103900 Populus trichocarpa HOM05D006892 ORTHO05D008592 3.2e-08 61.6 52 55.8
CSS0011916 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 4.2e-08 61.2 76 42.1
Lj6g0007525 Lotus japonicus HOM05D006892 ORTHO05D008592 4.2e-08 61.2 77 45.5
CiPaw.01G293100 Carya illinoinensis HOM05D006892 ORTHO05D008592 5.5e-08 60.8 80 40.0
Glyma.18G033400 Glycine max HOM05D006892 ORTHO05D008592 7.2e-08 60.5 78 42.3
MBI05_g02667_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 7.2e-08 60.5 75 42.7
Medtr3g069540 Medicago truncatula HOM05D006892 ORTHO05D008592 7.2e-08 60.5 79 40.5
TAR633G0729 Trochodendron aralioides HOM05D006892 ORTHO05D008592 7.2e-08 60.5 70 47.1
CSS0009632 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 9.4e-08 60.1 81 46.9
Sabra10G0151100 Salix brachista HOM05D006892 ORTHO05D008592 1.2e-07 59.7 70 42.9
CSS0005500 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 1.6e-07 59.3 82 43.9
ClCG04G007580 Citrullus lanatus HOM05D006892 ORTHO05D008592 1.6e-07 59.3 78 43.6
Manes.10G021300 Manihot esculenta HOM05D006892 ORTHO05D008592 1.6e-07 59.3 68 44.1
Gohir.D10G238364 Gossypium hirsutum HOM05D006892 ORTHO05D008592 2.1e-07 58.9 71 42.3
PGSC0003DMG400024270 Solanum tuberosum HOM05D006892 ORTHO05D008592 2.7e-07 58.5 74 47.3
CSS0020330 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 4.7e-07 57.8 81 44.4
CAN.G697.1 Capsicum annuum HOM05D006892 ORTHO05D008592 4.7e-07 57.8 40 60.0
Eucgr.G02995 Eucalyptus grandis HOM05D006892 ORTHO05D008592 4.7e-07 57.8 69 50.7
MBI14_g02869_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 4.7e-07 57.8 40 55.0
Thecc.10G031400 Theobroma cacao HOM05D006892 ORTHO05D008592 6.1e-07 57.4 71 43.7
TPR.G32561 Trifolium pratense HOM05D006892 ORTHO05D008592 6.1e-07 57.4 75 44.0
CDE02G2266 Ceratophyllum demersum HOM05D006892 ORTHO05D008592 8.0e-07 57.0 72 44.4
MELO3C033485.2 Cucumis melo HOM05D006892 ORTHO05D008592 8.0e-07 57.0 72 41.7
Eucgr.G02997 Eucalyptus grandis HOM05D006892 ORTHO05D008592 8.0e-07 57.0 79 46.8
arahy.Tifrunner.gnm1.ann1.F5D7CA Arachis hypogaea HOM05D006892 ORTHO05D008592 1.0e-06 56.6 79 44.3
COL.COLO4_36543 Corchorus olitorius HOM05D006892 ORTHO05D008592 1.8e-06 55.8 65 44.6
Sopen03g027280 Solanum pennellii HOM05D006892 ORTHO05D008592 1.8e-06 55.8 63 44.4
Atru.chr12.266 Acer truncatum HOM05D006892 ORTHO05D008592 5.2e-06 54.3 77 44.2
DCAR_028810 Daucus carota HOM05D006892 ORTHO05D008592 5.2e-06 54.3 40 47.5
Sed0015200 Sechium edule HOM05D006892 ORTHO05D008592 5.2e-06 54.3 84 39.3
GSVIVG01034067001 Vitis vinifera HOM05D006892 ORTHO05D008592 5.2e-06 54.3 79 45.6
arahy.Tifrunner.gnm1.ann1.J5YN7E Arachis hypogaea HOM05D006892 ORTHO05D008592 6.8e-06 53.9 79 44.3
Manes.07G122400 Manihot esculenta HOM05D006892 ORTHO05D008592 8.8e-06 53.5 75 40.0


User provided reference genes

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