Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc55.88 Carica papaya HOM05D005154 ORTHO05D006270 4.0e-88 328.2 180 100.0
Gohir.A02G128100 Gossypium hirsutum HOM05D005154 ORTHO05D006270 2.6e-58 229.2 168 78.0
Gohir.D03G039500 Gossypium hirsutum HOM05D005154 ORTHO05D006270 2.6e-58 229.2 168 78.0
COL.COLO4_27276 Corchorus olitorius HOM05D005154 ORTHO05D006270 5.7e-58 228.0 180 73.3
Duzib147G1408 Durio zibethinus HOM05D005154 ORTHO05D006270 1.3e-57 226.9 180 75.0
Gorai.003G040700 Gossypium raimondii HOM05D005154 ORTHO05D006270 1.3e-57 226.9 168 77.4
Duzib187G0267 Durio zibethinus HOM05D005154 ORTHO05D006270 3.1e-56 222.2 183 71.0
Thecc.01G097800 Theobroma cacao HOM05D005154 ORTHO05D006270 3.1e-56 222.2 183 72.1
Manes.12G131800 Manihot esculenta HOM05D005154 ORTHO05D006270 3.4e-55 218.8 179 70.9
Haze_24872 Corylus avellana HOM05D005154 ORTHO05D006270 4.5e-55 218.4 159 76.7
Haze_24881 Corylus avellana HOM05D005154 ORTHO05D006270 4.5e-55 218.4 159 76.7
Potri.007G095600 Populus trichocarpa HOM05D005154 ORTHO05D006270 4.5e-55 218.4 181 70.7
Cfa002623 Carpinus fangiana HOM05D005154 ORTHO05D006270 1.0e-54 217.2 159 77.4
Sabra05G0060000 Salix brachista HOM05D005154 ORTHO05D006270 1.0e-54 217.2 181 69.1
Potri.005G073500 Populus trichocarpa HOM05D005154 ORTHO05D006270 2.2e-54 216.1 176 70.5
Ciclev10026087m.g Citrus clementina HOM05D005154 ORTHO05D006270 2.9e-54 215.7 183 68.9
TWI77G0548 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 5.5e-53 211.5 168 70.8
TWI53G2081 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 9.4e-53 210.7 168 70.8
Eucgr.I00513 Eucalyptus grandis HOM05D005154 ORTHO05D006270 4.7e-52 208.4 163 71.2
Atru.chr3.1372 Acer truncatum HOM05D005154 ORTHO05D006270 1.4e-51 206.8 181 66.9
Glyma.05G176600 Glycine max HOM05D005154 ORTHO05D006270 2.3e-51 206.1 163 73.0
QL06p048470 Quercus lobata HOM05D005154 ORTHO05D006270 2.3e-51 206.1 158 74.7
Dinv13215 Davidia involucrata HOM05D005154 ORTHO05D006270 3.9e-51 205.3 162 72.8
Sabra07G0078700 Salix brachista HOM05D005154 ORTHO05D006270 3.9e-51 205.3 180 67.8
MD00G1037300 Malus domestica HOM05D005154 ORTHO05D006270 5.2e-51 204.9 168 72.6
RcHm_v2.0_Chr2g0112751 Rosa chinensis HOM05D005154 ORTHO05D006270 1.5e-50 203.4 168 71.4
Aa31LG1G16710 Aethionema arabicum HOM05D005154 ORTHO05D006270 2.6e-50 202.6 153 72.5
VMungo0251G0355 Vigna mungo HOM05D005154 ORTHO05D006270 2.6e-50 202.6 164 69.5
PGR004G1180 Punica granatum HOM05D005154 ORTHO05D006270 3.3e-50 202.2 157 74.5
Cc07_g14830 Coffea canephora HOM05D005154 ORTHO05D006270 5.7e-50 201.4 137 81.0
FAN23G2516 Fragaria x ananassa HOM05D005154 ORTHO05D006270 5.7e-50 201.4 168 70.2
FAN28G0994 Fragaria x ananassa HOM05D005154 ORTHO05D006270 5.7e-50 201.4 168 70.2
CSS0008069 Camellia sinensis var. sinensis HOM05D005154 ORTHO05D006270 7.4e-50 201.1 170 70.6
CARHR279200 Cardamine hirsuta HOM05D005154 ORTHO05D006270 7.4e-50 201.1 166 68.1
THA.LOC104807680 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 9.7e-50 200.7 141 76.6
Carub.0008s2612 Capsella rubella HOM05D005154 ORTHO05D006270 1.3e-49 200.3 167 68.3
FvH4_1g20490 Fragaria vesca HOM05D005154 ORTHO05D006270 1.7e-49 199.9 168 69.6
TAR362G0353 Trochodendron aralioides HOM05D005154 ORTHO05D006270 3.7e-49 198.7 167 72.5
TAR633G1456 Trochodendron aralioides HOM05D005154 ORTHO05D006270 3.7e-49 198.7 153 75.8
CiPaw.03G144000 Carya illinoinensis HOM05D005154 ORTHO05D006270 6.3e-49 198.0 159 73.6
MELO3C007745.2 Cucumis melo HOM05D005154 ORTHO05D006270 6.3e-49 198.0 140 77.1
Nn5g28615 Nelumbo nucifera HOM05D005154 ORTHO05D006270 1.1e-48 197.2 177 67.2
CsaV3_6G045320 Cucumis sativus L. HOM05D005154 ORTHO05D006270 1.8e-48 196.4 140 76.4
Sp2g28350 Schrenkiella parvula HOM05D005154 ORTHO05D006270 3.1e-48 195.7 166 67.5
Migut.L00147 Erythranthe guttata HOM05D005154 ORTHO05D006270 5.3e-48 194.9 155 71.0
Thhalv10004756m.g Eutrema salsugineum HOM05D005154 ORTHO05D006270 7.0e-48 194.5 142 73.2
MSTRG.3768 Avicennia marina HOM05D005154 ORTHO05D006270 9.1e-48 194.1 160 68.8
FAN19G2087 Fragaria x ananassa HOM05D005154 ORTHO05D006270 2.0e-47 193.0 175 66.9
AL8G42810 Arabidopsis lyrata HOM05D005154 ORTHO05D006270 2.6e-47 192.6 167 65.9
A06p32100 Brassica napus HOM05D005154 ORTHO05D006270 2.6e-47 192.6 170 65.3
BraA06t26139Z Brassica rapa HOM05D005154 ORTHO05D006270 2.6e-47 192.6 170 65.3
Nn1g06223 Nelumbo nucifera HOM05D005154 ORTHO05D006270 3.5e-47 192.2 179 66.5
BolC2t12462H Brassica oleracea HOM05D005154 ORTHO05D006270 5.9e-47 191.4 150 68.0
Peaxi162Scf00381g00914 Petunia axillaris HOM05D005154 ORTHO05D006270 5.9e-47 191.4 161 70.8
Phvul.002G257700 Phaseolus vulgaris HOM05D005154 ORTHO05D006270 5.9e-47 191.4 141 73.0
MSTRG.2575 Avicennia marina HOM05D005154 ORTHO05D006270 1.0e-46 190.7 140 77.1
THA.LOC104798878 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 1.0e-46 190.7 139 72.7
A02p43800 Brassica napus HOM05D005154 ORTHO05D006270 1.3e-46 190.3 142 70.4
Actinidia28853 Actinidia chinensis HOM05D005154 ORTHO05D006270 1.7e-46 189.9 170 67.1
Lalb_Chr07g0185271 Lupinus albus HOM05D005154 ORTHO05D006270 1.7e-46 189.9 154 68.8
Nitab4.5_0004570g0010 Nicotiana tabacum HOM05D005154 ORTHO05D006270 2.2e-46 189.5 168 67.9
BolC3t18339H Brassica oleracea HOM05D002046 ORTHO05D002180 3.8e-46 188.7 176 61.9
BraA02t09304Z Brassica rapa HOM05D005154 ORTHO05D006270 3.8e-46 188.7 150 66.7
SGA_v2.0_scaffold111G31501 Striga asiatica HOM05D005154 ORTHO05D006270 3.8e-46 188.7 160 66.9
vmacro18586 Vaccinium macrocarpon HOM05D005154 ORTHO05D006270 3.8e-46 188.7 165 66.1
C03p60830 Brassica napus HOM05D005154 ORTHO05D006270 5.0e-46 188.3 176 62.5
BcaC01g02761 Brassica carinata HOM05D005154 ORTHO05D006270 8.5e-46 187.6 176 61.4
Hma1.2p1_0019F.1_g013610 Hydrangea macrophylla HOM05D005154 ORTHO05D006270 1.5e-45 186.8 157 69.4
Lsat_1_v5_gn_2_66460 Lactuca sativa HOM05D005154 ORTHO05D006270 1.5e-45 186.8 159 69.2
Rhsim08G0012700 Rhododendron simsii HOM05D005154 ORTHO05D006270 1.5e-45 186.8 173 66.5
EL10Ac6g15137 Beta vulgaris HOM05D005154 ORTHO05D006270 1.9e-45 186.4 174 62.6
CAN.G905.36 Capsicum annuum HOM05D005154 ORTHO05D006270 3.2e-45 185.7 166 66.9
Solyc11g009070.2 Solanum lycopersicum HOM05D005154 ORTHO05D006270 3.2e-45 185.7 159 69.2
Sopen11g004840 Solanum pennellii HOM05D005154 ORTHO05D006270 4.2e-45 185.3 159 69.2
PSO210G3532 Papaver somniferum HOM05D005154 ORTHO05D006270 9.4e-45 184.1 162 72.2
PGSC0003DMG400016159 Solanum tuberosum HOM05D005154 ORTHO05D006270 9.4e-45 184.1 184 62.5
Sed0021389 Sechium edule HOM05D005154 ORTHO05D006270 1.2e-44 183.7 136 75.7
SGA_v2.0_scaffold335G49113 Striga asiatica HOM05D005154 ORTHO05D006270 1.2e-44 183.7 160 68.1
ATR1133G017 Amborella trichopoda HOM05D005154 ORTHO05D006270 1.6e-44 183.3 167 67.7
MBI02_g02178_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 1.6e-44 183.3 131 78.6
HanXRQChr14g0445521 Helianthus annuus HOM05D005154 ORTHO05D006270 3.6e-44 182.2 175 64.0
PSO447G0271 Papaver somniferum HOM05D005154 ORTHO05D006270 4.7e-44 181.8 162 71.6
arahy.Tifrunner.gnm1.ann1.LGH16T Arachis hypogaea HOM05D005154 ORTHO05D006270 6.1e-44 181.4 166 63.3
Ca_17754_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 1.0e-43 180.6 143 70.6
Migut.H02344 Erythranthe guttata HOM05D005154 ORTHO05D006270 1.0e-43 180.6 141 73.8
Lj4g0010322 Lotus japonicus HOM05D005154 ORTHO05D006270 1.4e-43 180.3 159 65.4
AUR62001985 Chenopodium quinoa HOM05D005154 ORTHO05D006270 1.8e-43 179.9 170 61.8
ECA238G2162 Erigeron canadensis HOM05D005154 ORTHO05D001925 2.3e-43 179.5 145 69.7
TPR.G6195 Trifolium pratense HOM05D005154 ORTHO05D006270 2.3e-43 179.5 161 64.6
arahy.Tifrunner.gnm1.ann1.0B7H6P Arachis hypogaea HOM05D005154 ORTHO05D006270 4.0e-43 178.7 166 62.7
Medtr8g089995 Medicago truncatula HOM05D005154 ORTHO05D006270 6.7e-43 177.9 148 68.9
Actinidia20002 Actinidia chinensis HOM05D005154 ORTHO05D006270 8.8e-43 177.6 141 69.5
SalBow5G0552 Salvia bowleyana HOM05D005154 ORTHO05D006270 1.2e-42 177.2 152 68.4
Prupe.6G191100 Prunus persica HOM05D005154 ORTHO05D006270 5.7e-42 174.9 139 74.1
C02p63960 Brassica napus HOM05D005154 ORTHO05D006270 7.5e-42 174.5 156 64.7
Sed0002157 Sechium edule HOM05D005154 ORTHO05D006270 7.5e-42 174.5 144 67.4
SalBow3G4482 Salvia bowleyana HOM05D005154 ORTHO05D006270 1.7e-41 173.3 147 66.0
SalBow3G3886 Salvia bowleyana HOM05D005154 ORTHO05D006270 2.2e-41 172.9 147 66.0
Hund13599 Selenicereus undatus HOM05D005154 ORTHO05D006270 3.7e-41 172.2 165 61.2
AT5G65250 Arabidopsis thaliana HOM05D005154 ORTHO05D006270 8.2e-41 171.0 153 63.4
CDE05G0874 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 1.8e-40 169.9 140 71.4
Ca_16517_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 4.1e-40 168.7 160 60.6
ClCG07G017400 Citrullus lanatus HOM05D005154 ORTHO05D006270 5.3e-40 168.3 155 64.5
Medtr3g086990 Medicago truncatula HOM05D005154 ORTHO05D006270 7.0e-40 167.9 150 65.3
MELO3C017601.2 Cucumis melo HOM05D005154 ORTHO05D006270 2.0e-39 166.4 161 60.9
BcaB07g34227 Brassica carinata HOM05D005154 ORTHO05D006270 5.9e-39 164.9 124 78.2
AUR62003820 Chenopodium quinoa HOM05D005154 ORTHO05D006270 1.0e-38 164.1 129 71.3
MBI02_g27971_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 1.0e-38 164.1 149 69.1
Glyma.08G134000 Glycine max HOM05D005154 ORTHO05D006270 1.3e-38 163.7 118 77.1
Lj4A897G79 Lonicera japonica HOM05D005154 ORTHO05D006270 1.7e-38 163.3 129 74.4
GSVIVG01006633001 Vitis vinifera HOM05D005154 ORTHO05D006270 2.2e-38 162.9 134 70.9
ClCG01G018660 Citrullus lanatus HOM05D005154 ORTHO05D006270 2.9e-38 162.5 252 46.0
Aqoxy6G00745 Aquilegia oxysepala HOM05D005154 ORTHO05D006270 6.5e-38 161.4 176 58.0
unitig_899.g14551 Utricularia gibba HOM05D005154 ORTHO05D006270 1.6e-36 156.8 147 61.2
HPP92_016780 Vanilla planifolia HOM05D005154 ORTHO05D006270 1.6e-36 156.8 170 58.8
Sc03g0000070 Simmondsia chinensis HOM05D005154 ORTHO05D006270 3.6e-36 155.6 173 60.1
Sed0027637 Sechium edule HOM05D005154 ORTHO05D006270 1.4e-35 153.7 152 60.5
PGR102G1872 Punica granatum HOM05D005154 ORTHO05D006270 4.0e-35 152.1 114 77.2
Oeu001799.2 Olea europaea HOM05D005154 ORTHO05D006270 6.8e-35 151.4 198 51.5
Oeu032406.1 Olea europaea HOM05D005154 ORTHO05D006270 7.5e-34 147.9 118 72.9
Psat7g056800 Pisum sativum HOM05D005154 ORTHO05D006270 1.3e-33 147.1 137 64.2
SEGI_40329 Sequoiadendron giganteum HOM05D005154 ORTHO05D006270 3.7e-33 145.6 139 59.7
Os08g0484800 Oryza sativa ssp. japonica HOM05D005154 ORTHO05D006270 8.3e-33 144.4 171 53.2
CsaV3_UNG158170 Cucumis sativus L. HOM05D001364 ORTHO05D006270 4.1e-32 142.1 191 50.8
DCAR_014210 Daucus carota HOM05D005154 ORTHO05D006270 9.1e-32 141.0 132 60.6
unitig_748.g8652 Utricularia gibba HOM05D005154 ORTHO05D006270 3.5e-31 139.0 133 61.7
BcaNung07054 Brassica carinata HOM05D005154 ORTHO05D006270 4.5e-31 138.7 96 82.3
MD01G1033600 Malus domestica HOM05D005154 ORTHO05D006270 2.9e-30 136.0 124 67.7
Psat5g090640 Pisum sativum HOM05D005154 ORTHO05D006270 8.6e-30 134.4 151 53.0
CsaV3_4G004630 Cucumis sativus L. HOM05D005154 ORTHO05D006270 1.4e-24 117.1 114 62.3
CDE03G0147 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 7.0e-24 114.8 103 62.1
CiPaw.04G102700 Carya illinoinensis HOM05D005154 ORTHO05D006270 1.7e-22 110.2 82 69.5
Lj2C542T5 Lonicera japonica HOM05D005154 ORTHO05D006270 1.0e-19 100.9 78 70.5
CiPaw.11G071200 Carya illinoinensis HOM05D005154 ORTHO05D006270 1.5e-18 97.1 61 86.9
CsaV3_UNG129000 Cucumis sativus L. HOM05D005154 ORTHO05D006270 2.6e-18 96.3 97 60.8
Lj2C542T6 Lonicera japonica HOM05D005154 ORTHO05D006270 4.4e-18 95.5 61 86.9
Mapoly0112s0020 Marchantia polymorpha HOM05D005154 ORTHO05D006270 4.4e-18 95.5 159 43.4
Pp3c10_24690 Physcomitrium patens HOM05D005154 ORTHO05D006270 1.3e-17 94.0 142 42.3
CDE05G3641 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 4.9e-17 92.0 78 67.9
SMO171G0129 Selaginella moellendorffii HOM05D005154 ORTHO05D006270 7.0e-16 88.2 106 50.0
CBR_g50776 Chara braunii HOM05D002289 ORTHO05D004369 1.0e-14 84.3 101 46.5
CsaV3_UNG223540 Cucumis sativus L. HOM05D005154 ORTHO05D006270 3.9e-14 82.4 112 52.7
Nitab4.5_0000743g0090 Nicotiana tabacum HOM05D005154 ORTHO05D006270 1.5e-13 80.5 78 57.7
AagrBONN_evm.TU.Sc2ySwM_344.1569 Anthoceros agrestis HOM05D005154 ORTHO05D006270 1.9e-13 80.1 127 40.9
CiPaw.02G062100 Carya illinoinensis HOM05D005154 ORTHO05D006270 2.5e-13 79.7 46 93.5
Actinidia28244 Actinidia chinensis HOM05D005154 ORTHO05D006270 4.3e-13 79.0 126 50.0
MBI02_g48054_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 1.8e-11 73.6 49 85.7
Actinidia30832 Actinidia chinensis HOM05D005154 ORTHO05D006270 4.1e-08 62.4 96 46.9
CDE06G0254 Ceratophyllum demersum HOM05D006096 ORTHO05D007775 1.3e-06 57.4 123 35.8


User provided reference genes

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