Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc55.25 Carica papaya HOM05D003826 ORTHO05D004479 1.0e-96 356.7 175 100.0
Thecc.01G090400 Theobroma cacao HOM05D003826 ORTHO05D004479 3.2e-74 282.0 166 80.7
Dinv13602 Davidia involucrata HOM05D003826 ORTHO05D004479 7.2e-74 280.8 167 80.2
Duzib147G0892 Durio zibethinus HOM05D003826 ORTHO05D004479 2.7e-73 278.9 167 79.6
Prupe.6G201600 Prunus persica HOM05D003826 ORTHO05D004479 1.8e-72 276.2 170 77.1
Hma1.2p1_1058F.1_g252870 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 6.3e-70 267.7 165 75.8
arahy.Tifrunner.gnm1.ann1.JLXM4S Arachis hypogaea HOM05D003826 ORTHO05D004479 1.4e-69 266.5 166 76.5
arahy.Tifrunner.gnm1.ann1.QQ8XF2 Arachis hypogaea HOM05D003826 ORTHO05D004479 1.4e-69 266.5 166 76.5
Cfa006882 Carpinus fangiana HOM05D003826 ORTHO05D004479 1.8e-69 266.2 173 75.1
Hma1.2p1_0908F.1_g235485 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 7.0e-69 264.2 170 74.7
Haze_03870 Corylus avellana HOM05D003826 ORTHO05D004479 1.2e-68 263.5 173 74.6
Nn1g05569 Nelumbo nucifera HOM05D003826 ORTHO05D004479 1.5e-68 263.1 171 73.7
Manes.12G126200 Manihot esculenta HOM05D003826 ORTHO05D004479 2.6e-68 262.3 164 77.4
Rhsim05G0101900 Rhododendron simsii HOM05D003826 ORTHO05D004479 2.6e-68 262.3 172 74.4
Manes.07G038200 Manihot esculenta HOM05D003826 ORTHO05D004479 4.5e-68 261.5 160 78.1
TAR628G1674 Trochodendron aralioides HOM05D003826 ORTHO05D004479 5.9e-68 261.2 172 74.4
Lalb_Chr05g0216361 Lupinus albus HOM05D003826 ORTHO05D004479 7.7e-68 260.8 162 76.5
vmacro19957 Vaccinium macrocarpon HOM05D003826 ORTHO05D004479 7.7e-68 260.8 172 73.8
Actinidia28031 Actinidia chinensis HOM05D003826 ORTHO05D004479 1.3e-67 260.0 167 75.4
Atru.chr3.1247 Acer truncatum HOM05D003826 ORTHO05D004479 2.9e-67 258.8 163 73.6
CiPaw.07G047500 Carya illinoinensis HOM05D003826 ORTHO05D004479 2.9e-67 258.8 165 73.9
PGR102G1409 Punica granatum HOM05D003826 ORTHO05D004479 2.9e-67 258.8 166 73.5
Manes.10G098600 Manihot esculenta HOM05D003826 ORTHO05D004479 5.0e-67 258.1 169 73.4
Thecc.02G129300 Theobroma cacao HOM05D003826 ORTHO05D004479 1.5e-66 256.5 170 72.9
GSVIVG01015652001 Vitis vinifera HOM05D003826 ORTHO05D004479 1.5e-66 256.5 162 75.3
MD01G1039300 Malus domestica HOM05D003826 ORTHO05D004479 1.9e-66 256.1 170 70.0
PGR042G0672 Punica granatum HOM05D003826 ORTHO05D004479 1.9e-66 256.1 167 73.1
Potri.017G043900 Populus trichocarpa HOM05D003826 ORTHO05D004479 3.2e-66 255.4 170 71.8
Migut.B00552 Erythranthe guttata HOM05D003826 ORTHO05D004479 5.5e-66 254.6 170 70.0
Gohir.A13G050900 Gossypium hirsutum HOM05D003826 ORTHO05D004479 5.5e-66 254.6 170 71.2
TWI14G0912 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 9.4e-66 253.8 169 71.6
Ciclev10029337m.g Citrus clementina HOM05D003826 ORTHO05D004479 1.2e-65 253.4 170 71.2
MBI16_g12461_MAGBIO Magnolia biondii HOM05D003826 ORTHO05D004479 1.2e-65 253.4 175 70.3
Atru.chr6.1261 Acer truncatum HOM05D003826 ORTHO05D004479 1.6e-65 253.1 170 71.2
CAN.G997.2 Capsicum annuum HOM05D003826 ORTHO05D004479 1.6e-65 253.1 169 69.2
Cpa.g.sc20.1 Carica papaya HOM05D003826 ORTHO05D004479 1.6e-65 253.1 171 70.2
Oeu042406.1 Olea europaea HOM05D003826 ORTHO05D004479 2.1e-65 252.7 170 71.8
Sabra17G0029800 Salix brachista HOM05D003826 ORTHO05D004479 2.1e-65 252.7 171 71.3
Atru.chr6.1269 Acer truncatum HOM05D003826 ORTHO05D004479 3.6e-65 251.9 170 70.6
Cc07_g14100 Coffea canephora HOM05D003826 ORTHO05D004479 3.6e-65 251.9 167 71.9
Eucgr.G00988 Eucalyptus grandis HOM05D003826 ORTHO05D004479 3.6e-65 251.9 170 71.2
CSS0016886 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 4.7e-65 251.5 172 70.9
CSS0036052 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 4.7e-65 251.5 172 70.9
Sc18g0007060 Simmondsia chinensis HOM05D003826 ORTHO05D004479 4.7e-65 251.5 172 70.9
Cc02_g20920 Coffea canephora HOM05D003826 ORTHO05D004479 6.1e-65 251.1 160 73.1
Gorai.013G055500 Gossypium raimondii HOM05D003826 ORTHO05D004479 6.1e-65 251.1 170 70.0
Nitab4.5_0008998g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 6.1e-65 251.1 169 68.0
MSTRG.20281 Avicennia marina HOM05D003826 ORTHO05D004479 8.0e-65 250.8 170 70.6
TWI59G0852 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 1.8e-64 249.6 170 70.6
FvH4_2g11710 Fragaria vesca HOM05D003826 ORTHO05D004479 2.3e-64 249.2 170 69.4
FAN24G2578 Fragaria x ananassa HOM05D003826 ORTHO05D004479 2.3e-64 249.2 170 69.4
Sp3g27460 Schrenkiella parvula HOM05D003826 ORTHO05D004479 2.3e-64 249.2 170 70.0
Nitab4.5_0002017g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 3.0e-64 248.8 169 68.0
Prupe.8G069800 Prunus persica HOM05D003826 ORTHO05D004479 3.0e-64 248.8 170 69.4
PGSC0003DMG400033580 Solanum tuberosum HOM05D003826 ORTHO05D004479 3.0e-64 248.8 169 69.8
Sed0006788 Sechium edule HOM05D003826 ORTHO05D004479 3.9e-64 248.4 170 70.0
Thhalv10022868m.g Eutrema salsugineum HOM05D003826 ORTHO05D004479 5.2e-64 248.1 174 70.7
MD05G1047400 Malus domestica HOM05D003826 ORTHO05D004479 5.2e-64 248.1 170 67.6
Nitab4.5_0011038g0020 Nicotiana tabacum HOM05D003826 ORTHO05D004479 5.2e-64 248.1 169 69.8
Potri.017G043700 Populus trichocarpa HOM05D003826 ORTHO05D004479 5.2e-64 248.1 170 70.6
Solyc01g105970.3 Solanum lycopersicum HOM05D003826 ORTHO05D004479 5.2e-64 248.1 169 69.8
Sopen01g048350 Solanum pennellii HOM05D003826 ORTHO05D004479 5.2e-64 248.1 169 69.8
TAR376G0575 Trochodendron aralioides HOM05D003826 ORTHO05D004479 5.2e-64 248.1 164 73.8
Aa31LG8G12520 Aethionema arabicum HOM05D003826 ORTHO05D004479 6.7e-64 247.7 160 73.1
Duzib052G0856 Durio zibethinus HOM05D003826 ORTHO05D004479 6.7e-64 247.7 170 69.4
Peaxi162Scf00003g03230 Petunia axillaris HOM05D003826 ORTHO05D004479 6.7e-64 247.7 169 69.8
Cfa005734 Carpinus fangiana HOM05D003826 ORTHO05D004479 8.8e-64 247.3 170 69.4
ClCG09G016080 Citrullus lanatus HOM05D003826 ORTHO05D004479 8.8e-64 247.3 170 68.8
Dinv24149 Davidia involucrata HOM05D003826 ORTHO05D004479 8.8e-64 247.3 168 72.6
Ah.03g139970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 1.1e-63 246.9 165 71.5
CiPaw.05G029600 Carya illinoinensis HOM05D003826 ORTHO05D004479 1.1e-63 246.9 167 69.5
PGSC0003DMG400031403 Solanum tuberosum HOM05D003826 ORTHO05D004479 1.1e-63 246.9 164 68.9
BcaB02g11486 Brassica carinata HOM05D003826 ORTHO05D004479 1.5e-63 246.5 174 69.5
FAN23G0964 Fragaria x ananassa HOM05D003826 ORTHO05D004479 2.6e-63 245.7 170 71.2
BolC9t54449H Brassica oleracea HOM05D003826 ORTHO05D004479 3.3e-63 245.4 174 69.0
CsaV3_7G006880 Cucumis sativus L. HOM05D003826 ORTHO05D004479 3.3e-63 245.4 170 68.8
Sed0018824 Sechium edule HOM05D003826 ORTHO05D004479 4.4e-63 245.0 160 71.2
CSS0050337 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 5.7e-63 244.6 161 72.0
MSTRG.27816 Avicennia marina HOM05D003826 ORTHO05D004479 7.4e-63 244.2 170 67.1
BcaC04g22775 Brassica carinata HOM05D003826 ORTHO05D004479 9.7e-63 243.8 174 68.4
C09p15420 Brassica napus HOM05D003826 ORTHO05D004479 9.7e-63 243.8 174 68.4
PSO541G0595 Papaver somniferum HOM05D003826 ORTHO05D004479 9.7e-63 243.8 167 70.1
Aqoxy6G00874 Aquilegia oxysepala HOM05D003826 ORTHO05D004479 1.7e-62 243.0 171 69.6
A09p13020 Brassica napus HOM05D003826 ORTHO05D004479 1.7e-62 243.0 174 67.8
BraA09t36947Z Brassica rapa HOM05D003826 ORTHO05D004479 1.7e-62 243.0 174 67.8
Carub.0003s2836 Capsella rubella HOM05D003826 ORTHO05D004479 1.7e-62 243.0 170 67.6
Haze_10523 Corylus avellana HOM05D003826 ORTHO05D004479 1.7e-62 243.0 170 68.8
RcHm_v2.0_Chr6g0271011 Rosa chinensis HOM05D003826 ORTHO05D004479 1.7e-62 243.0 160 71.2
FvH4_1g19640 Fragaria vesca HOM05D003826 ORTHO05D004479 2.2e-62 242.7 170 70.6
FAN19G1458 Fragaria x ananassa HOM05D003826 ORTHO05D004479 2.2e-62 242.7 170 70.6
EL10Ac9g22073 Beta vulgaris HOM05D003826 ORTHO05D004479 2.8e-62 242.3 164 68.9
CARHR104200 Cardamine hirsuta HOM05D003826 ORTHO05D004479 3.7e-62 241.9 174 67.2
MELO3C018606.2 Cucumis melo HOM05D003826 ORTHO05D004479 1.1e-61 240.4 172 68.6
CDE04G3107 Ceratophyllum demersum HOM05D003826 ORTHO05D004479 1.4e-61 240.0 159 72.3
FAN26G3235 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.4e-61 240.0 170 70.0
AL3G45800 Arabidopsis lyrata HOM05D003826 ORTHO05D004479 1.8e-61 239.6 170 67.1
CANSAT54G1150 Cannabis sativa HOM05D003826 ORTHO05D004479 2.4e-61 239.2 173 64.7
Migut.N01096 Erythranthe guttata HOM05D003826 ORTHO05D004479 2.4e-61 239.2 173 64.7
QL11p025207 Quercus lobata HOM05D003826 ORTHO05D004479 2.4e-61 239.2 160 73.1
DCAR_003601 Daucus carota HOM05D003826 ORTHO05D004479 3.1e-61 238.8 173 69.4
ECA236G1467 Erigeron canadensis HOM05D003826 ORTHO05D000778 3.1e-61 238.8 170 65.3
THA.LOC104807183 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 3.1e-61 238.8 170 66.5
arahy.Tifrunner.gnm1.ann1.AL483W Arachis hypogaea HOM05D003826 ORTHO05D004479 4.1e-61 238.4 173 67.1
VMungo0540G1729 Vigna mungo HOM05D003826 ORTHO05D004479 4.1e-61 238.4 172 66.9
Os03g0737400 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 5.3e-61 238.0 159 68.6
arahy.Tifrunner.gnm1.ann1.8F9AHD Arachis hypogaea HOM05D003826 ORTHO05D004479 7.0e-61 237.7 173 66.5
HanXRQChr08g0227191 Helianthus annuus HOM05D003826 ORTHO05D004479 7.0e-61 237.7 172 64.0
Lj5A230G39 Lonicera japonica HOM05D003826 ORTHO05D004479 9.1e-61 237.3 155 74.2
TPR.G9500 Trifolium pratense HOM05D003826 ORTHO05D004479 2.0e-60 236.1 169 67.5
Glyma.13G256700 Glycine max HOM05D003826 ORTHO05D004479 3.5e-60 235.3 172 65.7
arahy.Tifrunner.gnm1.ann1.8NDV1J Arachis hypogaea HOM05D003826 ORTHO05D004479 4.5e-60 235.0 169 62.7
Zm00001eb215290 Zea mays HOM05D003826 ORTHO05D004479 7.7e-60 234.2 167 65.9
CANSAT01G0714 Cannabis sativa HOM05D003826 ORTHO05D004479 1.3e-59 233.4 165 67.9
Phvul.002G212900 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 1.7e-59 233.0 173 62.4
Lj4g0024713 Lotus japonicus HOM05D003826 ORTHO05D004479 2.2e-59 232.6 169 65.7
Glyma.07G181900 Glycine max HOM05D003826 ORTHO05D004479 3.8e-59 231.9 170 62.9
Lj6g0003535 Lotus japonicus HOM05D003826 ORTHO05D004479 3.8e-59 231.9 169 66.3
Medtr2g009600 Medicago truncatula HOM05D003826 ORTHO05D004479 8.5e-59 230.7 172 63.4
unitig_46.g18833 Utricularia gibba HOM05D003826 ORTHO05D004479 8.5e-59 230.7 163 65.0
Ca_00163_v3 Cicer arietinum L. HOM05D003826 ORTHO05D004479 1.5e-58 229.9 172 68.0
Psat1g214120 Pisum sativum HOM05D003826 ORTHO05D004479 1.5e-58 229.9 172 64.5
arahy.Tifrunner.gnm1.ann1.MWC9N2 Arachis hypogaea HOM05D001561 ORTHO05D001715 2.5e-58 229.2 169 62.1
FAN28G0881 Fragaria x ananassa HOM05D003826 ORTHO05D004479 3.2e-58 228.8 184 64.7
SEGI_37389 Sequoiadendron giganteum HOM05D003826 ORTHO05D004479 7.2e-58 227.6 171 63.7
Phvul.006G202000 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 2.1e-57 226.1 171 64.3
Lalb_Chr16g0382941 Lupinus albus HOM05D003826 ORTHO05D004479 3.6e-57 225.3 163 63.8
Gorai.008G017400 Gossypium raimondii HOM05D003826 ORTHO05D004479 6.1e-57 224.6 172 64.5
Gohir.D12G017100 Gossypium hirsutum HOM05D003826 ORTHO05D004479 2.3e-56 222.6 175 63.4
Medtr4g093560 Medicago truncatula HOM05D003826 ORTHO05D004479 2.3e-56 222.6 173 60.1
Psat7g101120 Pisum sativum HOM05D003826 ORTHO05D004479 8.8e-56 220.7 173 59.5
unitig_37.g12793 Utricularia gibba HOM05D003826 ORTHO05D004479 2.6e-55 219.2 170 58.8
COL.COLO4_32389 Corchorus olitorius HOM05D003826 ORTHO05D004479 3.4e-55 218.8 170 64.7
Lsat_1_v5_gn_7_82781 Lactuca sativa HOM05D003826 ORTHO05D004479 4.4e-55 218.4 171 64.3
RcHm_v2.0_Chr2g0111211 Rosa chinensis HOM05D003826 ORTHO05D004479 1.7e-54 216.5 164 66.5
AUR62003663 Chenopodium quinoa HOM05D003826 ORTHO05D004479 2.8e-54 215.7 165 64.8
SGA_v2.0_scaffold83G26375 Striga asiatica HOM05D003826 ORTHO05D004479 7.0e-53 211.1 132 74.2
HPP92_016899 Vanilla planifolia HOM05D003826 ORTHO05D004479 1.6e-52 209.9 163 62.0
TPR.G2887 Trifolium pratense HOM05D003826 ORTHO05D004479 2.7e-52 209.1 163 60.1
Os03g0737300 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 3.5e-52 208.8 163 62.0
AagrBONN_evm.TU.Sc2ySwM_362.1195 Anthoceros agrestis HOM05D003826 ORTHO05D004479 5.9e-52 208.0 158 60.8
Lj5A230G40 Lonicera japonica HOM05D003826 ORTHO05D004479 5.0e-51 204.9 163 61.3
Mapoly0042s0019 Marchantia polymorpha HOM05D003826 ORTHO05D004479 1.1e-50 203.8 156 60.9
AT2G14110 Arabidopsis thaliana HOM05D003826 ORTHO05D004479 7.2e-50 201.1 132 69.7
SMO271G0099 Selaginella moellendorffii HOM05D003826 ORTHO05D004479 1.2e-49 200.3 160 56.9
Mapoly0032s0046 Marchantia polymorpha HOM05D003826 ORTHO05D004479 1.0e-48 197.2 159 58.5
Nitab4.5_0002095g0060 Nicotiana tabacum HOM05D003826 ORTHO05D004479 2.3e-48 196.1 137 68.6
Peaxi162Scf00299g00634 Petunia axillaris HOM05D003826 ORTHO05D004479 2.0e-47 193.0 169 58.0
Pp3c1_28610 Physcomitrium patens HOM05D003826 ORTHO05D004479 2.0e-47 193.0 157 56.1
GSVIVG01015647001 Vitis vinifera HOM05D003826 ORTHO05D004479 3.4e-47 192.2 137 71.5
Hund00378 Selenicereus undatus HOM05D003826 ORTHO05D004479 4.4e-47 191.8 121 78.5
Os11g0434000 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 2.4e-45 186.0 167 54.5
Hund16529 Selenicereus undatus HOM05D003826 ORTHO05D004479 3.8e-43 178.7 133 66.2
ATR0767G074 Amborella trichopoda HOM05D003826 ORTHO05D004479 6.6e-43 177.9 119 74.8
SalBow6G1284 Salvia bowleyana HOM05D003826 ORTHO05D004479 1.5e-42 176.8 141 63.1
CBR_g26273 Chara braunii HOM05D003826 ORTHO05D004479 2.1e-41 172.9 157 51.6
ATR0767G082 Amborella trichopoda HOM05D003826 ORTHO05D004479 2.3e-40 169.5 119 70.6
Glyma.15G058200 Glycine max HOM05D003826 ORTHO05D004479 7.5e-39 164.5 163 54.0
SalBow8G4107 Salvia bowleyana HOM05D003826 ORTHO05D004479 3.7e-38 162.2 169 51.5
RhsimUnG0154900 Rhododendron simsii HOM05D003826 ORTHO05D004479 3.2e-37 159.1 161 54.7
AUR62027111 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.3e-35 153.7 167 49.1
AUR62012887 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.7e-35 153.3 164 50.0
AUR62017972 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.7e-35 153.3 99 74.7
Ah.01g023970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 6.6e-35 151.4 164 48.2
Ciclev10026755m.g Citrus clementina HOM05D003826 ORTHO05D004479 4.3e-34 148.7 93 75.3
GSVIVG01015646001 Vitis vinifera HOM05D003826 ORTHO05D004479 1.8e-32 143.3 116 64.7
Nn5g29884 Nelumbo nucifera HOM05D003826 ORTHO05D004479 6.8e-32 141.4 89 75.3
VMungo0251G2759 Vigna mungo HOM05D003826 ORTHO05D004479 9.2e-29 131.0 95 62.1
Mapoly0010s0051 Marchantia polymorpha HOM05D003826 ORTHO05D004479 6.6e-27 124.8 156 39.1
MD10G1054300 Malus domestica HOM05D003826 ORTHO05D004479 7.3e-26 121.3 73 74.0
Lalb_Chr18g0060401 Lupinus albus HOM05D003826 ORTHO05D004479 1.6e-25 120.2 173 43.4
Solyc10g047310.1 Solanum lycopersicum HOM05D003826 ORTHO05D004479 2.6e-23 112.8 92 53.3
Mapoly0042s0017 Marchantia polymorpha HOM05D003826 ORTHO05D004479 4.0e-16 89.0 79 54.4
THA.LOC104824951 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 2.2e-14 83.2 158 39.2
Gohir.D13G049650 Gossypium hirsutum HOM05D003826 ORTHO05D004479 4.1e-13 79.0 52 73.1
CANSAT01G2972 Cannabis sativa HOM05D000003 ORTHO05D000004 3.6e-09 65.9 48 60.4
Cre09.g401738 Chlamydomonas reinhardtii HOM05D003826 ORTHO05D004479 3.6e-09 65.9 179 28.5
Sopen10g017590 Solanum pennellii HOM05D000002 ORTHO05D000001 8.1e-09 64.7 68 48.5
MCO11G520 Micromonas commoda HOM05D003826 ORTHO05D004479 4.0e-08 62.4 71 39.4
Gorai.002G159200 Gossypium raimondii HOM05D028424 ORTHO05D219023 6.8e-08 61.6 32 84.4
FAN15G0689 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.5e-07 60.5 34 70.6
MCO09G863 Micromonas commoda HOM05D003826 ORTHO05D004479 2.0e-07 60.1 60 40.0
Dinv36604 Davidia involucrata HOM05D003826 ORTHO05D004479 3.4e-07 59.3 34 70.6
Glyma.08G067900 Glycine max HOM05D003826 ORTHO05D004479 3.4e-07 59.3 76 40.8
Gohir.D12G069601 Gossypium hirsutum HOM05D001733 ORTHO05D047820 7.6e-07 58.2 32 81.2
Gorai.008G076300 Gossypium raimondii HOM05D001733 ORTHO05D047820 2.2e-06 56.6 32 78.1


User provided reference genes

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