Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc55.19 Carica papaya HOM05D005709 ORTHO05D006306 0.0e+00 1284.2 658 100.0
Potri.006G134400 Populus trichocarpa HOM05D005709 ORTHO05D006306 2.0e-254 882.5 644 70.8
RcHm_v2.0_Chr2g0111161 Rosa chinensis HOM05D005709 ORTHO05D006306 2.2e-253 879.0 673 68.5
Ciclev10025155m.g Citrus clementina HOM05D005709 ORTHO05D006306 3.8e-253 878.2 639 71.7
QL06p035832 Quercus lobata HOM05D005709 ORTHO05D006306 8.5e-253 877.1 652 69.8
Cfa006877 Carpinus fangiana HOM05D005709 ORTHO05D006306 2.1e-251 872.5 655 69.0
Manes.12G125900 Manihot esculenta HOM05D005709 ORTHO05D006306 4.7e-251 871.3 664 69.1
CiPaw.07G047300 Carya illinoinensis HOM05D005709 ORTHO05D006306 3.0e-250 868.6 649 69.3
TWI74G1439 Tripterygium wilfordii HOM05D005709 ORTHO05D006306 4.8e-248 861.3 659 68.7
Sabra06G0105500 Salix brachista HOM05D005709 ORTHO05D006306 1.1e-247 860.1 662 68.3
Haze_03880 Corylus avellana HOM05D005709 ORTHO05D006306 7.0e-247 857.4 655 68.2
FAN28G2327 Fragaria x ananassa HOM05D005709 ORTHO05D006306 2.5e-244 849.0 650 68.3
CANSAT01G1032 Cannabis sativa HOM05D005709 ORTHO05D006306 2.1e-243 845.9 667 67.5
MD11G1164000 Malus domestica HOM05D005709 ORTHO05D006306 6.1e-243 844.3 654 67.7
Thhalv10003796m.g Eutrema salsugineum HOM05D005709 ORTHO05D006306 1.4e-242 843.2 652 67.6
Prupe.6G202100 Prunus persica HOM05D005709 ORTHO05D006306 3.0e-242 842.0 649 68.4
Actinidia28821 Actinidia chinensis HOM05D005709 ORTHO05D006306 6.8e-242 840.9 670 67.3
FAN26G3468 Fragaria x ananassa HOM05D005709 ORTHO05D006306 8.3e-240 833.9 661 66.3
MD03G1143200 Malus domestica HOM05D005709 ORTHO05D006306 1.8e-239 832.8 666 66.4
ClCG10G007760 Citrullus lanatus HOM05D005709 ORTHO05D006306 5.4e-239 831.2 666 65.5
TAR625G0141 Trochodendron aralioides HOM05D005709 ORTHO05D006306 1.3e-237 826.6 657 66.4
FvH4_1g19610 Fragaria vesca HOM05D005709 ORTHO05D006306 1.7e-237 826.2 663 65.9
Sp2g28570 Schrenkiella parvula HOM05D005709 ORTHO05D006306 2.9e-237 825.5 659 65.4
MELO3C016416.2 Cucumis melo HOM05D005709 ORTHO05D006306 5.0e-237 824.7 676 64.5
Atru.chr3.1240 Acer truncatum HOM05D005709 ORTHO05D006306 1.5e-236 823.2 637 68.1
Thecc.01G090000 Theobroma cacao HOM05D005709 ORTHO05D006306 1.0e-234 817.0 642 66.7
AL8G43070 Arabidopsis lyrata HOM05D005709 ORTHO05D006306 6.8e-234 814.3 656 65.7
Eucgr.H04723 Eucalyptus grandis HOM05D005709 ORTHO05D006306 6.8e-234 814.3 656 65.9
Carub.0008s2634 Capsella rubella HOM05D005709 ORTHO05D006306 2.0e-233 812.8 654 65.6
Duzib187G1076 Durio zibethinus HOM05D005709 ORTHO05D006306 5.7e-233 811.2 662 64.5
A06p32320 Brassica napus HOM05D005709 ORTHO05D006306 1.7e-232 809.7 645 66.2
PGR102G2444 Punica granatum HOM05D005709 ORTHO05D006306 1.7e-232 809.7 659 65.1
VMungo1215G1966 Vigna mungo HOM05D005709 ORTHO05D006306 4.9e-232 808.1 655 65.5
CARHR279470 Cardamine hirsuta HOM05D005709 ORTHO05D006306 6.3e-232 807.7 653 65.7
Medtr5g032050 Medicago truncatula HOM05D005709 ORTHO05D006306 1.1e-231 807.0 654 64.7
Nn3g18597 Nelumbo nucifera HOM05D005709 ORTHO05D006306 1.8e-231 806.2 668 62.7
CsaV3_3G006890 Cucumis sativus L. HOM05D005709 ORTHO05D006306 2.4e-231 805.8 666 64.1
BraA06t26158Z Brassica rapa HOM05D005709 ORTHO05D006306 3.2e-231 805.4 643 65.9
vmacro18555 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 5.4e-231 804.7 665 65.4
AT5G65490 Arabidopsis thaliana HOM05D005709 ORTHO05D006306 2.0e-230 802.7 655 65.0
BolC3t18312H Brassica oleracea HOM05D005709 ORTHO05D006306 2.0e-230 802.7 641 65.2
Rhsim08G0016800 Rhododendron simsii HOM05D005709 ORTHO05D006306 3.5e-230 802.0 669 65.3
Sopen11g005470 Solanum pennellii HOM05D005709 ORTHO05D006306 1.3e-229 800.0 659 65.4
Lj2g0012290 Lotus japonicus HOM05D005709 ORTHO05D006306 2.3e-229 799.3 655 65.3
Ca_22702_v3 Cicer arietinum L. HOM05D005709 ORTHO05D006306 2.9e-229 798.9 648 64.2
PGSC0003DMG400016130 Solanum tuberosum HOM05D005709 ORTHO05D006306 8.6e-229 797.3 653 65.7
Glyma.09G199500 Glycine max HOM05D005709 ORTHO05D006306 1.5e-228 796.6 654 64.5
CSS0001510 Camellia sinensis var. sinensis HOM05D005709 ORTHO05D006306 1.9e-228 796.2 672 63.4
Lalb_Chr09g0325971 Lupinus albus HOM05D005709 ORTHO05D006306 3.3e-228 795.4 660 63.2
arahy.Tifrunner.gnm1.ann1.7T2SE7 Arachis hypogaea HOM05D005709 ORTHO05D006306 2.3e-226 789.3 656 63.6
arahy.Tifrunner.gnm1.ann1.IH5V0S Arachis hypogaea HOM05D005709 ORTHO05D006306 2.3e-226 789.3 656 63.6
C03p60550 Brassica napus HOM05D005709 ORTHO05D006306 2.3e-226 789.3 641 64.6
Aqoxy5G01380 Aquilegia oxysepala HOM05D005709 ORTHO05D006306 3.1e-226 788.9 669 64.7
Solyc11g010660.2 Solanum lycopersicum HOM05D005709 ORTHO05D006306 5.2e-226 788.1 661 64.4
FAN19G1851 Fragaria x ananassa HOM05D005709 ORTHO05D006306 2.6e-225 785.8 629 66.0
Nitab4.5_0013799g0010 Nicotiana tabacum HOM05D005709 ORTHO05D006306 2.6e-225 785.8 654 65.3
EL10Ac6g15201 Beta vulgaris HOM05D005709 ORTHO05D006306 2.9e-224 782.3 649 63.2
Lju188A3T31 Lonicera japonica HOM05D005709 ORTHO05D006306 4.9e-224 781.6 653 64.8
Ah.02g123530 Amaranthus hybridus HOM05D005709 ORTHO05D006306 2.4e-223 779.2 644 63.5
Aa31LG1G16510 Aethionema arabicum HOM05D005709 ORTHO05D006306 4.1e-223 778.5 654 62.4
ECA238G0695 Erigeron canadensis HOM05D005709 ORTHO05D006306 7.0e-223 777.7 659 61.5
Sed0005807 Sechium edule HOM05D005709 ORTHO05D006306 1.7e-221 773.1 655 62.9
Hund16527 Selenicereus undatus HOM05D005709 ORTHO05D006306 3.9e-221 771.9 639 63.1
Cc07_g14050 Coffea canephora HOM05D005709 ORTHO05D006306 8.6e-221 770.8 657 62.1
HanXRQChr14g0442981 Helianthus annuus HOM05D005709 ORTHO05D006306 8.6e-221 770.8 663 62.0
SGA_v2.0_scaffold115G32123 Striga asiatica HOM05D005709 ORTHO05D006306 1.1e-218 763.8 665 61.8
Nitab4.5_0007624g0020 Nicotiana tabacum HOM05D005709 ORTHO05D006306 4.0e-218 761.9 701 60.8
Psat2g082080 Pisum sativum HOM05D005709 ORTHO05D006306 4.9e-216 755.0 638 61.8
Peaxi162Scf00474g00732 Petunia axillaris HOM05D005709 ORTHO05D006306 6.4e-216 754.6 661 61.7
Gorai.003G037400 Gossypium raimondii HOM05D005709 ORTHO05D006306 1.4e-215 753.4 663 61.2
Gohir.D03G035800 Gossypium hirsutum HOM05D005709 ORTHO05D006306 1.7e-213 746.5 663 60.6
PSO170G3043 Papaver somniferum HOM05D005709 ORTHO05D006306 3.9e-213 745.3 649 61.3
Gohir.A02G144800 Gossypium hirsutum HOM05D005709 ORTHO05D006306 6.6e-213 744.6 663 60.5
MBI16_g12470_MAGBIO Magnolia biondii HOM05D005709 ORTHO05D006306 1.1e-212 743.8 689 58.8
SHI21884 Sapria himalayana HOM05D005709 ORTHO05D006306 4.3e-212 741.9 636 60.7
DCAR_010090 Daucus carota HOM05D005709 ORTHO05D006306 4.7e-211 738.4 648 61.1
COL.COLO4_27357 Corchorus olitorius HOM05D005709 ORTHO05D006306 8.1e-211 737.6 682 59.1
Migut.K00802 Erythranthe guttata HOM05D005709 ORTHO05D006306 9.9e-209 730.7 659 60.8
AUR62003667 Chenopodium quinoa HOM05D005709 ORTHO05D006306 5.4e-207 724.9 605 63.0
GSVIVG01007131001 Vitis vinifera HOM05D005709 ORTHO05D006306 2.4e-199 699.5 496 70.8
vmacro21792 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 9.3e-199 697.6 592 62.8
PSO017G1508 Papaver somniferum HOM05D005709 ORTHO05D006306 1.1e-196 690.6 654 57.6
Glyma.01G022800 Glycine max HOM05D005709 ORTHO05D006306 1.9e-196 689.9 527 67.9
vmacro18553 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 9.6e-196 687.6 568 64.4
unitig_32.g11802 Utricularia gibba HOM05D005709 ORTHO05D006306 2.4e-194 682.9 682 56.3
Phvul.002G146800 Phaseolus vulgaris HOM05D005709 ORTHO05D006306 1.5e-193 680.2 537 65.4
AUR62017977 Chenopodium quinoa HOM05D005709 ORTHO05D006306 2.9e-184 649.4 641 56.8
Sc03g0000380 Simmondsia chinensis HOM05D005709 ORTHO05D006306 1.6e-179 633.6 489 66.7
ATR0763G252 Amborella trichopoda HOM05D005709 ORTHO05D006306 6.2e-179 631.7 682 52.2
Os08g0447200 Oryza sativa ssp. japonica HOM05D005709 ORTHO05D006306 2.9e-176 622.9 650 53.5
CAN.G1344.19 Capsicum annuum HOM05D005709 ORTHO05D006306 1.1e-175 620.9 534 64.4
Lsat_1_v5_gn_2_70300 Lactuca sativa HOM05D005709 ORTHO05D006306 6.7e-173 611.7 502 63.5
SEGI_11890 Sequoiadendron giganteum HOM05D005709 ORTHO05D006306 1.1e-170 604.4 697 49.1
Zm00001eb040880 Zea mays HOM05D005709 ORTHO05D006306 5.3e-170 602.1 643 50.7
THA.LOC104809180 Tarenaya hassleriana HOM05D005709 ORTHO05D006306 3.4e-169 599.4 485 66.8
vmacro21794 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 4.1e-162 575.9 604 54.3
HPP92_015350 Vanilla planifolia HOM05D005709 ORTHO05D006306 2.8e-155 553.1 540 55.2
PSO675G1794 Papaver somniferum HOM05D005709 ORTHO05D006306 1.5e-140 504.2 439 61.7
SMO137G0394 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 2.8e-131 473.4 639 43.5
Medtr4g125890 Medicago truncatula HOM05D005709 ORTHO05D006306 4.1e-130 469.5 520 52.1
Mapoly0135s0033 Marchantia polymorpha HOM05D005709 ORTHO05D006306 1.6e-118 431.0 750 38.7
TAR381G1594 Trochodendron aralioides HOM05D005709 ORTHO05D006306 4.7e-110 402.9 387 60.7
Pp3c1_9650 Physcomitrium patens HOM05D005709 ORTHO05D006306 1.2e-108 398.3 686 38.2
Dinv13597 Davidia involucrata HOM05D005709 ORTHO05D006306 1.0e-104 385.2 291 71.5
TPR.G36816 Trifolium pratense HOM05D005709 ORTHO05D006306 9.5e-103 378.6 286 64.7
MBI16_g19593_MAGBIO Magnolia biondii HOM05D005709 ORTHO05D006306 2.8e-102 377.1 334 61.7
SMO137G0085 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 5.8e-100 369.4 573 40.7
Oeu002141.1 Olea europaea HOM05D005709 ORTHO05D006306 5.6e-95 352.8 285 68.1
Dinv13596 Davidia involucrata HOM05D005709 ORTHO05D006306 3.8e-91 340.1 343 54.2
AagrBONN_evm.TU.Sc2ySwM_368.1496 Anthoceros agrestis HOM05D005709 ORTHO05D006306 7.1e-90 335.9 651 35.3
TPR.G36731 Trifolium pratense HOM05D005709 ORTHO05D006306 1.6e-86 324.7 290 64.1
Nitab4.5_0001235g0070 Nicotiana tabacum HOM05D005280 ORTHO05D006253 1.8e-85 321.2 430 48.4
CBR_g78875 Chara braunii HOM05D005709 ORTHO05D006306 5.3e-77 293.1 488 39.1
HPP92_015330 Vanilla planifolia HOM05D005709 ORTHO05D006306 2.7e-73 280.8 333 48.3
Nitab4.5_0000294g0080 Nicotiana tabacum HOM05D005280 ORTHO05D006253 6.2e-70 269.6 206 69.9
BcaC01g02778 Brassica carinata HOM05D005709 ORTHO05D006306 1.8e-69 268.1 176 76.1
PSO210G2291 Papaver somniferum HOM05D005709 ORTHO05D006306 3.7e-62 243.8 382 42.1
THA.LOC104821549 Tarenaya hassleriana HOM05D005709 ORTHO05D006306 4.5e-60 236.9 156 75.0
Oeu031122.1 Olea europaea HOM05D005709 ORTHO05D006306 1.6e-57 228.4 197 60.9
Sed0017677 Sechium edule HOM05D005709 ORTHO05D006306 1.0e-56 225.7 383 41.5
TAR381G1451 Trochodendron aralioides HOM05D005709 ORTHO05D006306 3.7e-54 217.2 149 70.5
BcaC01g02779 Brassica carinata HOM05D005709 ORTHO05D006306 1.3e-43 182.2 116 68.1
BcaC01g02777 Brassica carinata HOM05D005709 ORTHO05D006306 6.9e-37 159.8 177 53.1
Cre03.g145707 Chlamydomonas reinhardtii HOM05D005709 ORTHO05D006306 9.4e-34 149.4 353 29.5
PRCOL_00002122 Prasinoderma coloniale HOM05D005709 ORTHO05D006306 1.2e-33 149.1 640 28.4
SEGI_13404 Sequoiadendron giganteum HOM05D005709 ORTHO05D006306 2.7e-20 104.8 124 47.6
BolC2t12478H Brassica oleracea HOM05D005709 ORTHO05D006306 2.1e-17 95.1 116 49.1
SalBow5G5475 Salvia bowleyana HOM05D036480 ORTHO05D006306 1.4e-16 92.4 94 54.3
C02p64140 Brassica napus HOM05D005709 ORTHO05D006306 2.6e-15 88.2 116 47.4
Phvul.008G217000 Phaseolus vulgaris HOM05D005709 ORTHO05D006306 3.4e-15 87.8 52 82.7
SMO207G0001 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 4.4e-15 87.4 85 51.8
TPR.G34440 Trifolium pratense HOM05D005709 ORTHO05D006306 5.7e-15 87.0 63 68.3
SMO162G0006 Selaginella moellendorffii HOM05D000981 ORTHO05D006306 1.7e-14 85.5 158 36.1
CARHR215690 Cardamine hirsuta HOM05D005709 ORTHO05D006306 8.3e-14 83.2 55 74.5
TPR.G25795 Trifolium pratense HOM05D005709 ORTHO05D006306 7.0e-13 80.1 63 63.5
HPP92_015331 Vanilla planifolia HOM05D005709 ORTHO05D006306 1.5e-10 72.4 48 66.7
GSVIVG01036155001 Vitis vinifera HOM05D005709 ORTHO05D006306 1.3e-06 59.3 56 46.4


User provided reference genes

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