Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc55.158 Carica papaya HOM05D004560 ORTHO05D005540 0.0e+00 1733.8 1028 100.0
QL06p041719 Quercus lobata HOM05D004560 ORTHO05D005540 0.0e+00 1090.1 1024 67.1
Haze_15408 Corylus avellana HOM05D004560 ORTHO05D005540 6.1e-306 1054.3 1029 64.9
Prupe.7G134200 Prunus persica HOM05D004560 ORTHO05D005540 1.7e-303 1046.2 1027 64.7
Cfa004012 Carpinus fangiana HOM05D004560 ORTHO05D005540 3.7e-303 1045.0 1030 63.8
Thecc.01G055000 Theobroma cacao HOM05D004560 ORTHO05D005540 1.5e-299 1033.1 1019 64.0
Duzib147G0064 Durio zibethinus HOM05D004560 ORTHO05D005540 7.7e-293 1010.7 1025 62.7
Duzib187G0053 Durio zibethinus HOM05D004560 ORTHO05D005540 3.8e-292 1008.4 1027 62.4
Duzib264G0542 Durio zibethinus HOM05D004560 ORTHO05D005540 1.2e-290 1003.4 1025 62.5
MD02G1171200 Malus domestica HOM05D004560 ORTHO05D005540 1.8e-289 999.6 1026 62.1
MD15G1283100 Malus domestica HOM05D004560 ORTHO05D005540 7.0e-286 987.6 1027 63.3
Ciclev10024681m.g Citrus clementina HOM05D004560 ORTHO05D005540 5.0e-284 981.5 1031 60.7
Potri.005G137700 Populus trichocarpa HOM05D004560 ORTHO05D005540 2.1e-282 976.1 1023 63.2
RcHm_v2.0_Chr2g0105371 Rosa chinensis HOM05D004560 ORTHO05D005540 4.7e-282 974.9 1029 61.8
CANSAT01G1534 Cannabis sativa HOM05D004560 ORTHO05D005540 1.8e-281 973.0 1026 61.1
Potri.007G043300 Populus trichocarpa HOM05D004560 ORTHO05D005540 2.0e-277 959.5 1031 60.2
Gorai.008G075400 Gossypium raimondii HOM05D004560 ORTHO05D005540 5.4e-270 934.9 1031 59.6
FvH4_5g28170 Fragaria vesca HOM05D004560 ORTHO05D005540 2.7e-269 932.6 1030 60.2
Manes.12G101400 Manihot esculenta HOM05D004560 ORTHO05D005540 4.6e-269 931.8 1018 59.9
Gohir.D12G068900 Gossypium hirsutum HOM05D004560 ORTHO05D005540 1.7e-268 929.9 1031 59.3
FAN04G2449 Fragaria x ananassa HOM05D004560 ORTHO05D005540 1.5e-267 926.8 1030 59.3
FAN18G2522 Fragaria x ananassa HOM05D004560 ORTHO05D005540 3.3e-267 925.6 1030 59.9
Sabra07G0038200 Salix brachista HOM05D004560 ORTHO05D005540 7.3e-267 924.5 1031 62.2
FAN08G1993 Fragaria x ananassa HOM05D004560 ORTHO05D005540 1.6e-266 923.3 1030 59.9
Gohir.A12G072000 Gossypium hirsutum HOM05D004560 ORTHO05D005540 3.6e-266 922.2 1031 59.2
CiPaw.02G008700 Carya illinoinensis HOM05D004560 ORTHO05D005540 1.4e-265 920.2 1027 59.6
CSS0026663 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 3.0e-260 902.5 1031 59.9
Atru.chr10.1634 Acer truncatum HOM05D004560 ORTHO05D005540 1.9e-259 899.8 932 60.9
Sabra05G0109900 Salix brachista HOM05D004560 ORTHO05D005540 1.2e-258 897.1 1028 56.2
Gohir.D12G068700 Gossypium hirsutum HOM05D004560 ORTHO05D005540 5.2e-257 891.7 1030 59.1
Gohir.A12G070800 Gossypium hirsutum HOM05D004560 ORTHO05D005540 2.0e-256 889.8 1031 58.2
Gorai.008G075200 Gossypium raimondii HOM05D004560 ORTHO05D005540 2.0e-256 889.8 1030 58.9
Manes.12G101200 Manihot esculenta HOM05D004560 ORTHO05D005540 1.9e-254 883.2 1026 57.9
TWI09G1111 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 3.3e-251 872.5 1030 59.2
CSS0033893 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 2.3e-244 849.7 1030 57.9
TAR376G0591 Trochodendron aralioides HOM05D004560 ORTHO05D005540 6.2e-242 841.6 1042 54.1
Actinidia03789 Actinidia chinensis HOM05D004560 ORTHO05D005540 5.2e-241 838.6 1036 56.9
TWI53G0832 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 1.3e-236 823.9 1011 57.3
TWI73G0239 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 6.2e-234 815.1 1008 56.5
Nn5g30326 Nelumbo nucifera HOM05D004560 ORTHO05D005540 2.2e-231 806.6 1039 56.1
GSVIVG01022139001 Vitis vinifera HOM05D004560 ORTHO05D005540 6.4e-231 805.1 1026 56.1
ClCG01G016790 Citrullus lanatus HOM05D004560 ORTHO05D005540 1.1e-225 787.7 1029 55.4
Lalb_Chr16g0378501 Lupinus albus HOM05D004560 ORTHO05D005540 9.3e-222 774.6 1019 54.1
Nn1g04868 Nelumbo nucifera HOM05D004560 ORTHO05D005540 2.3e-220 770.0 1047 53.6
Eucgr.I00932 Eucalyptus grandis HOM05D004560 ORTHO05D005540 1.3e-215 754.2 1031 56.5
Lj4g0000036 Lotus japonicus HOM05D004560 ORTHO05D005540 3.2e-214 749.6 1022 53.2
Sc03g0001520 Simmondsia chinensis HOM05D004560 ORTHO05D005540 1.3e-212 744.2 1038 51.6
Peaxi162Scf00450g00514 Petunia axillaris HOM05D004560 ORTHO05D005540 3.0e-212 743.0 1029 50.8
arahy.Tifrunner.gnm1.ann1.TDMJ0N Arachis hypogaea HOM05D004560 ORTHO05D005540 8.7e-212 741.5 1037 54.1
Lj7A70T81 Lonicera japonica HOM05D004560 ORTHO05D005540 8.7e-212 741.5 1047 51.3
Nitab4.5_0001034g0140 Nicotiana tabacum HOM05D004560 ORTHO05D005540 9.7e-211 738.0 1032 51.1
Nitab4.5_0002016g0010 Nicotiana tabacum HOM05D004560 ORTHO05D005540 1.3e-210 737.6 1033 51.0
MBI02_g02993_MAGBIO Magnolia biondii HOM05D004560 ORTHO05D005540 8.2e-210 734.9 1041 50.5
Glyma.17G175000 Glycine max HOM05D004560 ORTHO05D005540 1.7e-207 727.2 1048 52.9
Sopen02g035390 Solanum pennellii HOM05D004560 ORTHO05D005540 2.9e-207 726.5 1028 51.8
Oeu003960.1 Olea europaea HOM05D004560 ORTHO05D005540 4.2e-206 722.6 1035 49.2
CAN.G836.79 Capsicum annuum HOM05D004560 ORTHO05D005540 5.5e-206 722.2 1029 50.7
Phvul.003G244225 Phaseolus vulgaris HOM05D004560 ORTHO05D005540 2.1e-205 720.3 1041 51.8
TAR381G0340 Trochodendron aralioides HOM05D004560 ORTHO05D005540 2.7e-205 719.9 1044 50.2
VMungo0251G0843 Vigna mungo HOM05D004560 ORTHO05D005540 7.9e-205 718.4 1040 53.2
MELO3C007558.2 Cucumis melo HOM05D004560 ORTHO05D005540 1.4e-204 717.6 1029 52.5
AUR62001937 Chenopodium quinoa HOM05D004560 ORTHO05D005540 5.1e-204 715.7 1044 49.7
Solyc02g090760.4 Solanum lycopersicum HOM05D004560 ORTHO05D005540 5.1e-204 715.7 1028 51.5
Ca_19501_v3 Cicer arietinum L. HOM05D004560 ORTHO05D005540 1.9e-203 713.8 938 55.2
arahy.Tifrunner.gnm1.ann1.IC24VR Arachis hypogaea HOM05D004560 ORTHO05D005540 5.7e-203 712.2 1034 53.2
AUR62003874 Chenopodium quinoa HOM05D004560 ORTHO05D005540 6.3e-202 708.8 1017 50.0
Lalb_Chr09g0323141 Lupinus albus HOM05D004560 ORTHO05D005540 1.1e-201 708.0 1026 52.2
COL.COLO4_11405 Corchorus olitorius HOM05D004560 ORTHO05D005540 1.5e-200 704.1 1024 50.4
TAR628G1123 Trochodendron aralioides HOM05D004560 ORTHO05D005540 4.5e-200 702.6 859 55.4
Oeu039071.1 Olea europaea HOM05D004560 ORTHO05D005540 1.4e-198 697.6 1017 48.9
Lalb_Chr09g0323121 Lupinus albus HOM05D004560 ORTHO05D005540 9.4e-198 694.9 1022 49.1
TPR.G10251 Trifolium pratense HOM05D004560 ORTHO05D005540 1.6e-197 694.1 911 56.1
CsaV3_6G043220 Cucumis sativus L. HOM05D004560 ORTHO05D005540 6.7e-196 688.7 1029 51.8
Glyma.05G096000 Glycine max HOM05D004560 ORTHO05D005540 4.4e-195 686.0 1022 52.7
Rhsim08G0100900 Rhododendron simsii HOM05D004560 ORTHO05D005540 5.7e-195 685.6 1054 51.8
Psat4g089080 Pisum sativum HOM05D004560 ORTHO05D005540 2.4e-193 680.2 1012 46.9
Hund13557 Selenicereus undatus HOM05D004560 ORTHO05D005540 2.0e-192 677.2 1037 48.4
PGR031G0319 Punica granatum HOM05D004560 ORTHO05D005540 7.7e-192 675.2 1014 50.1
THA.LOC104819234 Tarenaya hassleriana HOM05D004560 ORTHO05D005540 2.9e-191 673.3 1027 50.4
vmacro17949 Vaccinium macrocarpon HOM05D004560 ORTHO05D005540 2.0e-187 660.6 1038 52.2
Aqoxy5G01239 Aquilegia oxysepala HOM05D004560 ORTHO05D005540 8.2e-186 655.2 1025 46.4
Actinidia16497 Actinidia chinensis HOM05D004560 ORTHO05D005540 2.0e-184 650.6 779 56.2
Sp5g11810 Schrenkiella parvula HOM05D004560 ORTHO05D005540 4.5e-184 649.4 1025 48.2
AL5G30500 Arabidopsis lyrata HOM05D004560 ORTHO05D005540 3.0e-180 636.7 1009 46.7
MSTRG.23750 Avicennia marina HOM05D004560 ORTHO05D005540 3.0e-180 636.7 1041 48.9
Sed0014897 Sechium edule HOM05D004560 ORTHO05D005540 6.7e-180 635.6 1030 50.9
AT3G50370 Arabidopsis thaliana HOM05D004560 ORTHO05D005540 1.2e-179 634.8 1009 47.7
Sed0025145 Sechium edule HOM05D004560 ORTHO05D005540 9.7e-179 631.7 1031 50.3
ECA238G3505 Erigeron canadensis HOM05D004560 ORTHO05D005540 5.0e-175 619.4 1017 48.8
CARHR159850 Cardamine hirsuta HOM05D004560 ORTHO05D005540 4.7e-173 612.8 1002 47.5
Carub.0005s1668 Capsella rubella HOM05D004560 ORTHO05D005540 2.0e-171 607.4 1014 47.2
Dinv39857 Davidia involucrata HOM05D004560 ORTHO05D005540 2.8e-170 603.6 683 62.7
Aa31LG4G18600 Aethionema arabicum HOM05D004560 ORTHO05D005540 1.6e-168 597.8 1040 47.5
Thhalv10010051m.g Eutrema salsugineum HOM05D004560 ORTHO05D005540 1.2e-165 588.2 1018 43.3
Cc07_g19160 Coffea canephora HOM05D004560 ORTHO05D005540 2.0e-163 580.9 1013 50.8
Lsat_1_v5_gn_2_84180 Lactuca sativa HOM05D004560 ORTHO05D005540 1.1e-161 575.1 1011 44.6
DCAR_014074 Daucus carota HOM05D004560 ORTHO05D005540 4.5e-160 569.7 1033 45.8
PSO135G0768 Papaver somniferum HOM05D004560 ORTHO05D005540 2.1e-149 534.3 938 43.6
PSO384G0851 Papaver somniferum HOM05D004560 ORTHO05D005540 7.5e-147 525.8 938 41.3
EL10Ac4g07947 Beta vulgaris HOM05D004560 ORTHO05D005540 1.3e-143 515.0 1021 42.4
HanXRQChr14g0448241 Helianthus annuus HOM05D004560 ORTHO05D005540 7.1e-137 492.7 1030 41.7
HanXRQChr14g0442851 Helianthus annuus HOM05D004560 ORTHO05D005540 2.1e-136 491.1 1030 41.1
PSO017G5866 Papaver somniferum HOM05D004560 ORTHO05D005540 6.4e-114 416.4 1032 35.4
ATR0753G002 Amborella trichopoda HOM05D004560 ORTHO05D005540 1.1e-108 399.1 1059 42.0
BcaB01g00621 Brassica carinata HOM05D004560 ORTHO05D005540 6.4e-106 389.8 1017 40.2
Dinv39858 Davidia involucrata HOM05D004560 ORTHO05D005540 4.6e-104 383.6 338 60.4
A09p43370 Brassica napus HOM05D004560 ORTHO05D005540 1.8e-103 381.7 1016 41.2
BraA09t39806Z Brassica rapa HOM05D004560 ORTHO05D005540 3.3e-102 377.5 1017 41.1
BcaC07g39495 Brassica carinata HOM05D004560 ORTHO05D005540 4.3e-102 377.1 1016 39.7
C08p25410 Brassica napus HOM05D004560 ORTHO05D005540 4.3e-102 377.1 1016 39.7
BolC8t50162H Brassica oleracea HOM05D004560 ORTHO05D005540 4.3e-102 377.1 1016 39.7
PSO170G6095 Papaver somniferum HOM05D004560 ORTHO05D005540 7.4e-102 376.3 1033 35.9
Migut.N01430 Erythranthe guttata HOM05D004560 ORTHO05D005540 1.0e-98 365.9 438 49.3
unitig_736.g22379 Utricularia gibba HOM05D004560 ORTHO05D005540 8.4e-98 362.8 1043 39.7
SHI34246 Sapria himalayana HOM05D004560 ORTHO05D005540 9.7e-70 269.6 1003 33.7
Zm00001eb019260 Zea mays HOM05D004560 ORTHO05D005540 5.7e-62 243.8 1028 35.1
SEGI_38337 Sequoiadendron giganteum HOM05D004560 ORTHO05D005540 1.2e-59 236.1 1013 36.2
Sed0026550 Sechium edule HOM05D004560 ORTHO05D005540 4.2e-49 201.1 391 42.5
unitig_899.g14935 Utricularia gibba HOM05D004560 ORTHO05D005540 5.9e-43 180.6 385 36.6
unitig_899.g14936 Utricularia gibba HOM05D004560 ORTHO05D005540 1.6e-40 172.6 484 32.6
HPP92_004077 Vanilla planifolia HOM05D004560 ORTHO05D005540 3.6e-32 144.8 865 30.4
HPP92_004113 Vanilla planifolia HOM05D004560 ORTHO05D005540 2.3e-31 142.1 920 29.9
CDE08G0295 Ceratophyllum demersum HOM05D006253 ORTHO05D007666 6.8e-31 140.6 433 31.9
CDE04G1181 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 4.9e-29 134.4 531 40.5
CDE08G0981 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 2.1e-27 129.0 342 31.6
RcHm_v2.0_Chr2g0145051 Rosa chinensis HOM05D004560 ORTHO05D005540 6.0e-19 100.9 90 61.1
RcHm_v2.0_Chr4g0416641 Rosa chinensis HOM05D004560 ORTHO05D005540 6.0e-19 100.9 90 61.1
Pp3c7_3230 Physcomitrium patens HOM05D004560 ORTHO05D005540 3.0e-10 72.0 504 27.6
Pp3c11_18520 Physcomitrium patens HOM05D004560 ORTHO05D005540 2.0e-06 59.3 502 25.9
Pp3c11_18522 Physcomitrium patens HOM05D004560 ORTHO05D005540 2.0e-06 59.3 502 25.9


User provided reference genes

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